GO Enrichment Analysis of Co-expressed Genes with
AT1G29660
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 5 | GO:0009854: oxidative photosynthetic carbon pathway | 2.61E-05 |
| 6 | GO:0071482: cellular response to light stimulus | 5.90E-05 |
| 7 | GO:0042371: vitamin K biosynthetic process | 8.78E-05 |
| 8 | GO:0071461: cellular response to redox state | 8.78E-05 |
| 9 | GO:0034337: RNA folding | 8.78E-05 |
| 10 | GO:0051775: response to redox state | 8.78E-05 |
| 11 | GO:0009443: pyridoxal 5'-phosphate salvage | 8.78E-05 |
| 12 | GO:0046467: membrane lipid biosynthetic process | 8.78E-05 |
| 13 | GO:0000481: maturation of 5S rRNA | 8.78E-05 |
| 14 | GO:0043085: positive regulation of catalytic activity | 1.25E-04 |
| 15 | GO:0009767: photosynthetic electron transport chain | 1.68E-04 |
| 16 | GO:0010207: photosystem II assembly | 1.91E-04 |
| 17 | GO:0071457: cellular response to ozone | 2.08E-04 |
| 18 | GO:0009629: response to gravity | 2.08E-04 |
| 19 | GO:0080005: photosystem stoichiometry adjustment | 2.08E-04 |
| 20 | GO:0010541: acropetal auxin transport | 2.08E-04 |
| 21 | GO:0010160: formation of animal organ boundary | 3.48E-04 |
| 22 | GO:0015979: photosynthesis | 3.49E-04 |
| 23 | GO:0006810: transport | 3.49E-04 |
| 24 | GO:0034220: ion transmembrane transport | 4.99E-04 |
| 25 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 5.01E-04 |
| 26 | GO:2001141: regulation of RNA biosynthetic process | 5.01E-04 |
| 27 | GO:0071484: cellular response to light intensity | 5.01E-04 |
| 28 | GO:0006107: oxaloacetate metabolic process | 5.01E-04 |
| 29 | GO:0080170: hydrogen peroxide transmembrane transport | 5.01E-04 |
| 30 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 5.01E-04 |
| 31 | GO:0010731: protein glutathionylation | 5.01E-04 |
| 32 | GO:0071486: cellular response to high light intensity | 6.66E-04 |
| 33 | GO:0006109: regulation of carbohydrate metabolic process | 6.66E-04 |
| 34 | GO:0030104: water homeostasis | 6.66E-04 |
| 35 | GO:0006546: glycine catabolic process | 6.66E-04 |
| 36 | GO:0006734: NADH metabolic process | 6.66E-04 |
| 37 | GO:0006465: signal peptide processing | 8.44E-04 |
| 38 | GO:0071493: cellular response to UV-B | 8.44E-04 |
| 39 | GO:0043097: pyrimidine nucleoside salvage | 8.44E-04 |
| 40 | GO:0042549: photosystem II stabilization | 1.03E-03 |
| 41 | GO:0006206: pyrimidine nucleobase metabolic process | 1.03E-03 |
| 42 | GO:0060918: auxin transport | 1.03E-03 |
| 43 | GO:0050665: hydrogen peroxide biosynthetic process | 1.03E-03 |
| 44 | GO:0015995: chlorophyll biosynthetic process | 1.09E-03 |
| 45 | GO:0010019: chloroplast-nucleus signaling pathway | 1.23E-03 |
| 46 | GO:0009645: response to low light intensity stimulus | 1.44E-03 |
| 47 | GO:0055114: oxidation-reduction process | 1.58E-03 |
| 48 | GO:0034599: cellular response to oxidative stress | 1.58E-03 |
| 49 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.66E-03 |
| 50 | GO:0052543: callose deposition in cell wall | 1.66E-03 |
| 51 | GO:0009690: cytokinin metabolic process | 1.66E-03 |
| 52 | GO:0032508: DNA duplex unwinding | 1.66E-03 |
| 53 | GO:0017004: cytochrome complex assembly | 1.89E-03 |
| 54 | GO:0019430: removal of superoxide radicals | 1.89E-03 |
| 55 | GO:0010204: defense response signaling pathway, resistance gene-independent | 1.89E-03 |
| 56 | GO:0032544: plastid translation | 1.89E-03 |
| 57 | GO:0009926: auxin polar transport | 1.94E-03 |
| 58 | GO:0006754: ATP biosynthetic process | 2.14E-03 |
| 59 | GO:0043069: negative regulation of programmed cell death | 2.65E-03 |
| 60 | GO:0009684: indoleacetic acid biosynthetic process | 2.93E-03 |
| 61 | GO:0019684: photosynthesis, light reaction | 2.93E-03 |
| 62 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.93E-03 |
| 63 | GO:0006352: DNA-templated transcription, initiation | 2.93E-03 |
| 64 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.93E-03 |
| 65 | GO:0008361: regulation of cell size | 3.21E-03 |
| 66 | GO:0006108: malate metabolic process | 3.50E-03 |
| 67 | GO:0010540: basipetal auxin transport | 3.80E-03 |
| 68 | GO:0010143: cutin biosynthetic process | 3.80E-03 |
| 69 | GO:0019253: reductive pentose-phosphate cycle | 3.80E-03 |
| 70 | GO:0042343: indole glucosinolate metabolic process | 4.10E-03 |
| 71 | GO:0006833: water transport | 4.42E-03 |
| 72 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.42E-03 |
| 73 | GO:0007017: microtubule-based process | 5.07E-03 |
| 74 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.07E-03 |
| 75 | GO:0098542: defense response to other organism | 5.42E-03 |
| 76 | GO:0009409: response to cold | 5.67E-03 |
| 77 | GO:0006633: fatty acid biosynthetic process | 5.78E-03 |
| 78 | GO:0048443: stamen development | 6.48E-03 |
| 79 | GO:0042631: cellular response to water deprivation | 7.24E-03 |
| 80 | GO:0042335: cuticle development | 7.24E-03 |
| 81 | GO:0071472: cellular response to salt stress | 7.62E-03 |
| 82 | GO:0009958: positive gravitropism | 7.62E-03 |
| 83 | GO:0006662: glycerol ether metabolic process | 7.62E-03 |
| 84 | GO:0032502: developmental process | 9.24E-03 |
| 85 | GO:0009639: response to red or far red light | 1.01E-02 |
| 86 | GO:0042128: nitrate assimilation | 1.24E-02 |
| 87 | GO:0016311: dephosphorylation | 1.33E-02 |
| 88 | GO:0018298: protein-chromophore linkage | 1.38E-02 |
| 89 | GO:0009813: flavonoid biosynthetic process | 1.43E-02 |
| 90 | GO:0010218: response to far red light | 1.48E-02 |
| 91 | GO:0009631: cold acclimation | 1.53E-02 |
| 92 | GO:0048527: lateral root development | 1.53E-02 |
| 93 | GO:0042742: defense response to bacterium | 1.58E-02 |
| 94 | GO:0006979: response to oxidative stress | 1.59E-02 |
| 95 | GO:0009637: response to blue light | 1.63E-02 |
| 96 | GO:0009853: photorespiration | 1.63E-02 |
| 97 | GO:0006099: tricarboxylic acid cycle | 1.68E-02 |
| 98 | GO:0006631: fatty acid metabolic process | 1.84E-02 |
| 99 | GO:0009640: photomorphogenesis | 1.95E-02 |
| 100 | GO:0009644: response to high light intensity | 2.06E-02 |
| 101 | GO:0009636: response to toxic substance | 2.12E-02 |
| 102 | GO:0006855: drug transmembrane transport | 2.18E-02 |
| 103 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.47E-02 |
| 104 | GO:0010224: response to UV-B | 2.47E-02 |
| 105 | GO:0043086: negative regulation of catalytic activity | 2.72E-02 |
| 106 | GO:0009058: biosynthetic process | 3.78E-02 |
| 107 | GO:0055085: transmembrane transport | 4.06E-02 |
| 108 | GO:0006413: translational initiation | 4.35E-02 |
| 109 | GO:0045490: pectin catabolic process | 4.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 4 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 5 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 6 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 7 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 8 | GO:0043864: indoleacetamide hydrolase activity | 0.00E+00 |
| 9 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 10 | GO:0004328: formamidase activity | 8.78E-05 |
| 11 | GO:0046906: tetrapyrrole binding | 8.78E-05 |
| 12 | GO:0080132: fatty acid alpha-hydroxylase activity | 8.78E-05 |
| 13 | GO:0008746: NAD(P)+ transhydrogenase activity | 8.78E-05 |
| 14 | GO:0004047: aminomethyltransferase activity | 2.08E-04 |
| 15 | GO:0004312: fatty acid synthase activity | 2.08E-04 |
| 16 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.08E-04 |
| 17 | GO:0016491: oxidoreductase activity | 2.77E-04 |
| 18 | GO:0070402: NADPH binding | 3.48E-04 |
| 19 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 3.48E-04 |
| 20 | GO:0050734: hydroxycinnamoyltransferase activity | 3.48E-04 |
| 21 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 5.01E-04 |
| 22 | GO:0001872: (1->3)-beta-D-glucan binding | 5.01E-04 |
| 23 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 5.01E-04 |
| 24 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 5.01E-04 |
| 25 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 5.01E-04 |
| 26 | GO:0001053: plastid sigma factor activity | 6.66E-04 |
| 27 | GO:0016987: sigma factor activity | 6.66E-04 |
| 28 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 6.66E-04 |
| 29 | GO:0009011: starch synthase activity | 6.66E-04 |
| 30 | GO:0008891: glycolate oxidase activity | 6.66E-04 |
| 31 | GO:0004040: amidase activity | 8.44E-04 |
| 32 | GO:0015250: water channel activity | 9.37E-04 |
| 33 | GO:0016615: malate dehydrogenase activity | 1.03E-03 |
| 34 | GO:0004784: superoxide dismutase activity | 1.03E-03 |
| 35 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.23E-03 |
| 36 | GO:0030060: L-malate dehydrogenase activity | 1.23E-03 |
| 37 | GO:0004849: uridine kinase activity | 1.23E-03 |
| 38 | GO:0019899: enzyme binding | 1.44E-03 |
| 39 | GO:0003993: acid phosphatase activity | 1.58E-03 |
| 40 | GO:0004033: aldo-keto reductase (NADP) activity | 1.66E-03 |
| 41 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 2.14E-03 |
| 42 | GO:0008047: enzyme activator activity | 2.65E-03 |
| 43 | GO:0004565: beta-galactosidase activity | 3.50E-03 |
| 44 | GO:0010329: auxin efflux transmembrane transporter activity | 3.50E-03 |
| 45 | GO:0008266: poly(U) RNA binding | 3.80E-03 |
| 46 | GO:0031409: pigment binding | 4.42E-03 |
| 47 | GO:0004857: enzyme inhibitor activity | 4.74E-03 |
| 48 | GO:0005528: FK506 binding | 4.74E-03 |
| 49 | GO:0030570: pectate lyase activity | 6.12E-03 |
| 50 | GO:0047134: protein-disulfide reductase activity | 6.86E-03 |
| 51 | GO:0008080: N-acetyltransferase activity | 7.62E-03 |
| 52 | GO:0004791: thioredoxin-disulfide reductase activity | 8.02E-03 |
| 53 | GO:0010181: FMN binding | 8.02E-03 |
| 54 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 8.07E-03 |
| 55 | GO:0048038: quinone binding | 8.83E-03 |
| 56 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 9.67E-03 |
| 57 | GO:0008483: transaminase activity | 1.05E-02 |
| 58 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.05E-02 |
| 59 | GO:0005200: structural constituent of cytoskeleton | 1.05E-02 |
| 60 | GO:0016168: chlorophyll binding | 1.19E-02 |
| 61 | GO:0030247: polysaccharide binding | 1.28E-02 |
| 62 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.74E-02 |
| 63 | GO:0003824: catalytic activity | 1.77E-02 |
| 64 | GO:0005215: transporter activity | 1.79E-02 |
| 65 | GO:0004364: glutathione transferase activity | 1.90E-02 |
| 66 | GO:0004185: serine-type carboxypeptidase activity | 1.95E-02 |
| 67 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.06E-02 |
| 68 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.18E-02 |
| 69 | GO:0051287: NAD binding | 2.24E-02 |
| 70 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.41E-02 |
| 71 | GO:0016887: ATPase activity | 2.80E-02 |
| 72 | GO:0030599: pectinesterase activity | 2.97E-02 |
| 73 | GO:0015035: protein disulfide oxidoreductase activity | 3.17E-02 |
| 74 | GO:0016829: lyase activity | 3.85E-02 |
| 75 | GO:0016740: transferase activity | 3.90E-02 |
| 76 | GO:0016787: hydrolase activity | 4.08E-02 |
| 77 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.22E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.68E-14 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 2.70E-09 |
| 3 | GO:0009570: chloroplast stroma | 8.79E-07 |
| 4 | GO:0009941: chloroplast envelope | 1.36E-06 |
| 5 | GO:0009654: photosystem II oxygen evolving complex | 8.54E-06 |
| 6 | GO:0009579: thylakoid | 4.14E-05 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 5.06E-05 |
| 8 | GO:0009344: nitrite reductase complex [NAD(P)H] | 8.78E-05 |
| 9 | GO:0009782: photosystem I antenna complex | 8.78E-05 |
| 10 | GO:0043674: columella | 8.78E-05 |
| 11 | GO:0005787: signal peptidase complex | 8.78E-05 |
| 12 | GO:0030095: chloroplast photosystem II | 1.91E-04 |
| 13 | GO:0009534: chloroplast thylakoid | 3.10E-04 |
| 14 | GO:0005773: vacuole | 3.85E-04 |
| 15 | GO:0048046: apoplast | 5.86E-04 |
| 16 | GO:0019898: extrinsic component of membrane | 6.17E-04 |
| 17 | GO:0010319: stromule | 8.40E-04 |
| 18 | GO:0042807: central vacuole | 1.44E-03 |
| 19 | GO:0005777: peroxisome | 1.51E-03 |
| 20 | GO:0031977: thylakoid lumen | 1.79E-03 |
| 21 | GO:0009539: photosystem II reaction center | 1.89E-03 |
| 22 | GO:0045298: tubulin complex | 2.14E-03 |
| 23 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.14E-03 |
| 24 | GO:0032040: small-subunit processome | 3.21E-03 |
| 25 | GO:0030076: light-harvesting complex | 4.10E-03 |
| 26 | GO:0009505: plant-type cell wall | 5.04E-03 |
| 27 | GO:0009705: plant-type vacuole membrane | 6.35E-03 |
| 28 | GO:0016020: membrane | 7.86E-03 |
| 29 | GO:0009522: photosystem I | 8.02E-03 |
| 30 | GO:0046658: anchored component of plasma membrane | 8.41E-03 |
| 31 | GO:0009523: photosystem II | 8.42E-03 |
| 32 | GO:0031969: chloroplast membrane | 1.22E-02 |
| 33 | GO:0005887: integral component of plasma membrane | 2.45E-02 |
| 34 | GO:0010287: plastoglobule | 3.50E-02 |
| 35 | GO:0031225: anchored component of membrane | 4.97E-02 |