Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G29530

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905177: tracheary element differentiation0.00E+00
2GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
3GO:0008298: intracellular mRNA localization0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
6GO:0070979: protein K11-linked ubiquitination0.00E+00
7GO:0098586: cellular response to virus0.00E+00
8GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
9GO:0017009: protein-phycocyanobilin linkage0.00E+00
10GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
11GO:0006573: valine metabolic process0.00E+00
12GO:0000372: Group I intron splicing0.00E+00
13GO:0006114: glycerol biosynthetic process0.00E+00
14GO:0033528: S-methylmethionine cycle0.00E+00
15GO:0045038: protein import into chloroplast thylakoid membrane1.56E-06
16GO:0000373: Group II intron splicing2.46E-05
17GO:0010207: photosystem II assembly9.92E-05
18GO:0080110: sporopollenin biosynthetic process1.25E-04
19GO:0009658: chloroplast organization1.98E-04
20GO:0009793: embryo development ending in seed dormancy3.24E-04
21GO:0006551: leucine metabolic process3.60E-04
22GO:0043087: regulation of GTPase activity3.60E-04
23GO:2000021: regulation of ion homeostasis3.60E-04
24GO:0006436: tryptophanyl-tRNA aminoacylation3.60E-04
25GO:0070574: cadmium ion transmembrane transport3.60E-04
26GO:0090548: response to nitrate starvation3.60E-04
27GO:0000066: mitochondrial ornithine transport3.60E-04
28GO:1902458: positive regulation of stomatal opening3.60E-04
29GO:0006419: alanyl-tRNA aminoacylation3.60E-04
30GO:0015969: guanosine tetraphosphate metabolic process3.60E-04
31GO:0009090: homoserine biosynthetic process3.60E-04
32GO:0031426: polycistronic mRNA processing3.60E-04
33GO:0000012: single strand break repair3.60E-04
34GO:1902025: nitrate import3.60E-04
35GO:0043266: regulation of potassium ion transport3.60E-04
36GO:0048564: photosystem I assembly3.97E-04
37GO:0032544: plastid translation4.86E-04
38GO:0048507: meristem development5.82E-04
39GO:0009086: methionine biosynthetic process6.87E-04
40GO:1903426: regulation of reactive oxygen species biosynthetic process7.83E-04
41GO:0051214: RNA virus induced gene silencing7.83E-04
42GO:0010275: NAD(P)H dehydrogenase complex assembly7.83E-04
43GO:0046741: transport of virus in host, tissue to tissue7.83E-04
44GO:0060359: response to ammonium ion7.83E-04
45GO:1900871: chloroplast mRNA modification7.83E-04
46GO:0006435: threonyl-tRNA aminoacylation7.83E-04
47GO:0000256: allantoin catabolic process7.83E-04
48GO:0006696: ergosterol biosynthetic process1.27E-03
49GO:0043157: response to cation stress1.27E-03
50GO:0005977: glycogen metabolic process1.27E-03
51GO:0010136: ureide catabolic process1.27E-03
52GO:0031145: anaphase-promoting complex-dependent catabolic process1.27E-03
53GO:0010623: programmed cell death involved in cell development1.27E-03
54GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.27E-03
55GO:0090351: seedling development1.50E-03
56GO:0043572: plastid fission1.83E-03
57GO:2001141: regulation of RNA biosynthetic process1.83E-03
58GO:0009067: aspartate family amino acid biosynthetic process1.83E-03
59GO:0030071: regulation of mitotic metaphase/anaphase transition1.83E-03
60GO:0010239: chloroplast mRNA processing1.83E-03
61GO:0009226: nucleotide-sugar biosynthetic process1.83E-03
62GO:0006145: purine nucleobase catabolic process1.83E-03
63GO:0051016: barbed-end actin filament capping1.83E-03
64GO:0042989: sequestering of actin monomers1.83E-03
65GO:0010021: amylopectin biosynthetic process2.45E-03
66GO:0051781: positive regulation of cell division2.45E-03
67GO:0048442: sepal development2.45E-03
68GO:0051322: anaphase2.45E-03
69GO:0006661: phosphatidylinositol biosynthetic process2.45E-03
70GO:0010508: positive regulation of autophagy2.45E-03
71GO:0008295: spermidine biosynthetic process2.45E-03
72GO:0010584: pollen exine formation2.92E-03
73GO:0009107: lipoate biosynthetic process3.14E-03
74GO:0016123: xanthophyll biosynthetic process3.14E-03
75GO:0032876: negative regulation of DNA endoreduplication3.14E-03
76GO:0030041: actin filament polymerization3.14E-03
77GO:0016117: carotenoid biosynthetic process3.16E-03
78GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.16E-03
79GO:0045489: pectin biosynthetic process3.68E-03
80GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.88E-03
81GO:0009959: negative gravitropism3.88E-03
82GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.88E-03
83GO:0010190: cytochrome b6f complex assembly3.88E-03
84GO:0007059: chromosome segregation3.96E-03
85GO:0048316: seed development4.29E-03
86GO:0009099: valine biosynthetic process4.67E-03
87GO:0009854: oxidative photosynthetic carbon pathway4.67E-03
88GO:0009088: threonine biosynthetic process4.67E-03
89GO:0010076: maintenance of floral meristem identity4.67E-03
90GO:0009082: branched-chain amino acid biosynthetic process4.67E-03
91GO:0007264: small GTPase mediated signal transduction4.86E-03
92GO:0009395: phospholipid catabolic process5.52E-03
93GO:0051693: actin filament capping5.52E-03
94GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.52E-03
95GO:0006400: tRNA modification5.52E-03
96GO:0051510: regulation of unidimensional cell growth5.52E-03
97GO:2000070: regulation of response to water deprivation6.41E-03
98GO:0010492: maintenance of shoot apical meristem identity6.41E-03
99GO:0042255: ribosome assembly6.41E-03
100GO:0006353: DNA-templated transcription, termination6.41E-03
101GO:0070413: trehalose metabolism in response to stress6.41E-03
102GO:0006875: cellular metal ion homeostasis6.41E-03
103GO:0032875: regulation of DNA endoreduplication6.41E-03
104GO:0071482: cellular response to light stimulus7.36E-03
105GO:0009827: plant-type cell wall modification7.36E-03
106GO:0009657: plastid organization7.36E-03
107GO:0009097: isoleucine biosynthetic process7.36E-03
108GO:0009821: alkaloid biosynthetic process8.35E-03
109GO:0010206: photosystem II repair8.35E-03
110GO:0008202: steroid metabolic process9.38E-03
111GO:0010267: production of ta-siRNAs involved in RNA interference9.38E-03
112GO:0009098: leucine biosynthetic process9.38E-03
113GO:0030422: production of siRNA involved in RNA interference1.05E-02
114GO:0006259: DNA metabolic process1.05E-02
115GO:0048441: petal development1.05E-02
116GO:0009853: photorespiration1.09E-02
117GO:0010216: maintenance of DNA methylation1.16E-02
118GO:0006265: DNA topological change1.16E-02
119GO:0009089: lysine biosynthetic process via diaminopimelate1.16E-02
120GO:0006415: translational termination1.16E-02
121GO:0006352: DNA-templated transcription, initiation1.16E-02
122GO:0045037: protein import into chloroplast stroma1.28E-02
123GO:0030036: actin cytoskeleton organization1.40E-02
124GO:0009767: photosynthetic electron transport chain1.40E-02
125GO:0006302: double-strand break repair1.52E-02
126GO:0048440: carpel development1.52E-02
127GO:0010020: chloroplast fission1.52E-02
128GO:0007015: actin filament organization1.52E-02
129GO:0042538: hyperosmotic salinity response1.78E-02
130GO:0006289: nucleotide-excision repair1.92E-02
131GO:0005992: trehalose biosynthetic process1.92E-02
132GO:0007010: cytoskeleton organization1.92E-02
133GO:0051302: regulation of cell division2.06E-02
134GO:0008299: isoprenoid biosynthetic process2.06E-02
135GO:0006418: tRNA aminoacylation for protein translation2.06E-02
136GO:0015992: proton transport2.20E-02
137GO:0031348: negative regulation of defense response2.35E-02
138GO:0006730: one-carbon metabolic process2.35E-02
139GO:0055114: oxidation-reduction process2.64E-02
140GO:0009306: protein secretion2.65E-02
141GO:0010089: xylem development2.65E-02
142GO:0048443: stamen development2.65E-02
143GO:0019722: calcium-mediated signaling2.65E-02
144GO:0006396: RNA processing2.80E-02
145GO:0008033: tRNA processing2.97E-02
146GO:0010087: phloem or xylem histogenesis2.97E-02
147GO:0010197: polar nucleus fusion3.13E-02
148GO:0046323: glucose import3.13E-02
149GO:0010268: brassinosteroid homeostasis3.13E-02
150GO:0007018: microtubule-based movement3.30E-02
151GO:0019252: starch biosynthetic process3.47E-02
152GO:0008654: phospholipid biosynthetic process3.47E-02
153GO:0055072: iron ion homeostasis3.47E-02
154GO:0009791: post-embryonic development3.47E-02
155GO:0016132: brassinosteroid biosynthetic process3.64E-02
156GO:0000302: response to reactive oxygen species3.64E-02
157GO:0032502: developmental process3.81E-02
158GO:0009630: gravitropism3.81E-02
159GO:0010583: response to cyclopentenone3.81E-02
160GO:0031047: gene silencing by RNA3.81E-02
161GO:0016032: viral process3.81E-02
162GO:0019761: glucosinolate biosynthetic process3.81E-02
163GO:0016125: sterol metabolic process4.17E-02
164GO:0007267: cell-cell signaling4.35E-02
165GO:0006413: translational initiation4.36E-02
166GO:0008152: metabolic process4.38E-02
167GO:0051607: defense response to virus4.54E-02
168GO:0000910: cytokinesis4.54E-02
169GO:0016126: sterol biosynthetic process4.72E-02
170GO:0010027: thylakoid membrane organization4.72E-02
171GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.91E-02
172GO:0010029: regulation of seed germination4.91E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0043136: glycerol-3-phosphatase activity0.00E+00
4GO:0000121: glycerol-1-phosphatase activity0.00E+00
5GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
6GO:0019144: ADP-sugar diphosphatase activity0.00E+00
7GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
10GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.60E-04
13GO:0004830: tryptophan-tRNA ligase activity3.60E-04
14GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.60E-04
15GO:0004451: isocitrate lyase activity3.60E-04
16GO:0016776: phosphotransferase activity, phosphate group as acceptor3.60E-04
17GO:0080042: ADP-glucose pyrophosphohydrolase activity3.60E-04
18GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity3.60E-04
19GO:0004813: alanine-tRNA ligase activity3.60E-04
20GO:0005290: L-histidine transmembrane transporter activity3.60E-04
21GO:0016618: hydroxypyruvate reductase activity3.60E-04
22GO:0003984: acetolactate synthase activity3.60E-04
23GO:0051996: squalene synthase activity3.60E-04
24GO:0043022: ribosome binding3.97E-04
25GO:0005525: GTP binding5.63E-04
26GO:0016491: oxidoreductase activity5.94E-04
27GO:0010291: carotene beta-ring hydroxylase activity7.83E-04
28GO:0080041: ADP-ribose pyrophosphohydrolase activity7.83E-04
29GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.83E-04
30GO:0009977: proton motive force dependent protein transmembrane transporter activity7.83E-04
31GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity7.83E-04
32GO:0004766: spermidine synthase activity7.83E-04
33GO:0004829: threonine-tRNA ligase activity7.83E-04
34GO:0000064: L-ornithine transmembrane transporter activity7.83E-04
35GO:0019156: isoamylase activity7.83E-04
36GO:0004412: homoserine dehydrogenase activity7.83E-04
37GO:0048531: beta-1,3-galactosyltransferase activity7.83E-04
38GO:0008728: GTP diphosphokinase activity7.83E-04
39GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.83E-04
40GO:0016597: amino acid binding8.15E-04
41GO:0030267: glyoxylate reductase (NADP) activity1.27E-03
42GO:0070402: NADPH binding1.27E-03
43GO:0008430: selenium binding1.27E-03
44GO:0004180: carboxypeptidase activity1.27E-03
45GO:0016992: lipoate synthase activity1.27E-03
46GO:0004148: dihydrolipoyl dehydrogenase activity1.27E-03
47GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.27E-03
48GO:0003861: 3-isopropylmalate dehydratase activity1.27E-03
49GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.34E-03
50GO:0004300: enoyl-CoA hydratase activity1.83E-03
51GO:0015189: L-lysine transmembrane transporter activity1.83E-03
52GO:0004072: aspartate kinase activity1.83E-03
53GO:0005354: galactose transmembrane transporter activity1.83E-03
54GO:0048027: mRNA 5'-UTR binding1.83E-03
55GO:0009678: hydrogen-translocating pyrophosphatase activity1.83E-03
56GO:0015086: cadmium ion transmembrane transporter activity1.83E-03
57GO:0015181: arginine transmembrane transporter activity1.83E-03
58GO:0004792: thiosulfate sulfurtransferase activity1.83E-03
59GO:0016149: translation release factor activity, codon specific1.83E-03
60GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.83E-03
61GO:0004672: protein kinase activity2.33E-03
62GO:0001053: plastid sigma factor activity2.45E-03
63GO:0016836: hydro-lyase activity2.45E-03
64GO:0080032: methyl jasmonate esterase activity2.45E-03
65GO:0016987: sigma factor activity2.45E-03
66GO:0070628: proteasome binding2.45E-03
67GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.45E-03
68GO:0042277: peptide binding2.45E-03
69GO:0003924: GTPase activity2.80E-03
70GO:0008374: O-acyltransferase activity3.14E-03
71GO:0003785: actin monomer binding3.14E-03
72GO:0003690: double-stranded DNA binding3.47E-03
73GO:0080030: methyl indole-3-acetate esterase activity3.88E-03
74GO:0031593: polyubiquitin binding3.88E-03
75GO:0004556: alpha-amylase activity3.88E-03
76GO:0050662: coenzyme binding3.96E-03
77GO:0048038: quinone binding4.55E-03
78GO:0004656: procollagen-proline 4-dioxygenase activity4.67E-03
79GO:0003723: RNA binding5.23E-03
80GO:0004427: inorganic diphosphatase activity5.52E-03
81GO:0015103: inorganic anion transmembrane transporter activity5.52E-03
82GO:0008312: 7S RNA binding6.41E-03
83GO:0004525: ribonuclease III activity6.41E-03
84GO:0008142: oxysterol binding7.36E-03
85GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.36E-03
86GO:0008236: serine-type peptidase activity8.18E-03
87GO:0003747: translation release factor activity8.35E-03
88GO:0015144: carbohydrate transmembrane transporter activity8.73E-03
89GO:0016844: strictosidine synthase activity9.38E-03
90GO:0004222: metalloendopeptidase activity9.49E-03
91GO:0005351: sugar:proton symporter activity1.02E-02
92GO:0004805: trehalose-phosphatase activity1.05E-02
93GO:0003824: catalytic activity1.06E-02
94GO:0005089: Rho guanyl-nucleotide exchange factor activity1.16E-02
95GO:0000049: tRNA binding1.28E-02
96GO:0009982: pseudouridine synthase activity1.40E-02
97GO:0003725: double-stranded RNA binding1.40E-02
98GO:0008081: phosphoric diester hydrolase activity1.40E-02
99GO:0016788: hydrolase activity, acting on ester bonds1.87E-02
100GO:0031418: L-ascorbic acid binding1.92E-02
101GO:0043130: ubiquitin binding1.92E-02
102GO:0003779: actin binding2.64E-02
103GO:0003727: single-stranded RNA binding2.65E-02
104GO:0004812: aminoacyl-tRNA ligase activity2.81E-02
105GO:0004527: exonuclease activity3.13E-02
106GO:0046873: metal ion transmembrane transporter activity3.13E-02
107GO:0008536: Ran GTPase binding3.13E-02
108GO:0008080: N-acetyltransferase activity3.13E-02
109GO:0016853: isomerase activity3.30E-02
110GO:0005355: glucose transmembrane transporter activity3.30E-02
111GO:0010181: FMN binding3.30E-02
112GO:0019843: rRNA binding3.40E-02
113GO:0019901: protein kinase binding3.47E-02
114GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.49E-02
115GO:0016787: hydrolase activity3.74E-02
116GO:0004518: nuclease activity3.81E-02
117GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.81E-02
118GO:0003684: damaged DNA binding4.17E-02
119GO:0016791: phosphatase activity4.17E-02
120GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.36E-02
121GO:0016413: O-acetyltransferase activity4.54E-02
122GO:0008017: microtubule binding4.89E-02
RankGO TermAdjusted P value
1GO:0005948: acetolactate synthase complex0.00E+00
2GO:0010368: chloroplast isoamylase complex0.00E+00
3GO:0009507: chloroplast4.47E-26
4GO:0009570: chloroplast stroma1.70E-09
5GO:0009535: chloroplast thylakoid membrane4.19E-06
6GO:0080085: signal recognition particle, chloroplast targeting5.84E-06
7GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.86E-04
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.82E-04
9GO:0008290: F-actin capping protein complex7.83E-04
10GO:0009574: preprophase band1.19E-03
11GO:0033281: TAT protein transport complex1.27E-03
12GO:0042651: thylakoid membrane2.05E-03
13GO:0030663: COPI-coated vesicle membrane2.45E-03
14GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.45E-03
15GO:0009579: thylakoid3.15E-03
16GO:0009536: plastid4.54E-03
17GO:0009295: nucleoid5.86E-03
18GO:0009501: amyloplast6.41E-03
19GO:0009941: chloroplast envelope6.50E-03
20GO:0030529: intracellular ribonucleoprotein complex6.58E-03
21GO:0005680: anaphase-promoting complex8.35E-03
22GO:0042644: chloroplast nucleoid8.35E-03
23GO:0016604: nuclear body9.38E-03
24GO:0030125: clathrin vesicle coat1.05E-02
25GO:0000311: plastid large ribosomal subunit1.28E-02
26GO:0005578: proteinaceous extracellular matrix1.40E-02
27GO:0009508: plastid chromosome1.40E-02
28GO:0005938: cell cortex1.40E-02
29GO:0046658: anchored component of plasma membrane1.50E-02
30GO:0030176: integral component of endoplasmic reticulum membrane1.65E-02
31GO:0005773: vacuole2.03E-02
32GO:0009654: photosystem II oxygen evolving complex2.06E-02
33GO:0009532: plastid stroma2.20E-02
34GO:0031969: chloroplast membrane2.39E-02
35GO:0015629: actin cytoskeleton2.50E-02
36GO:0009706: chloroplast inner membrane2.72E-02
37GO:0005871: kinesin complex2.81E-02
38GO:0010287: plastoglobule3.22E-02
39GO:0009543: chloroplast thylakoid lumen3.40E-02
40GO:0019898: extrinsic component of membrane3.47E-02
41GO:0005623: cell3.49E-02
42GO:0005759: mitochondrial matrix4.26E-02
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Gene type



Gene DE type