GO Enrichment Analysis of Co-expressed Genes with
AT1G29390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 3 | GO:0015979: photosynthesis | 1.07E-10 |
| 4 | GO:0015995: chlorophyll biosynthetic process | 3.61E-08 |
| 5 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.72E-07 |
| 6 | GO:0006000: fructose metabolic process | 1.42E-06 |
| 7 | GO:0090391: granum assembly | 1.42E-06 |
| 8 | GO:0009773: photosynthetic electron transport in photosystem I | 1.70E-06 |
| 9 | GO:0005983: starch catabolic process | 2.19E-06 |
| 10 | GO:0006094: gluconeogenesis | 2.77E-06 |
| 11 | GO:0010196: nonphotochemical quenching | 3.21E-05 |
| 12 | GO:0009772: photosynthetic electron transport in photosystem II | 3.21E-05 |
| 13 | GO:0055114: oxidation-reduction process | 4.12E-05 |
| 14 | GO:0006002: fructose 6-phosphate metabolic process | 5.37E-05 |
| 15 | GO:0010206: photosystem II repair | 6.66E-05 |
| 16 | GO:0005980: glycogen catabolic process | 8.25E-05 |
| 17 | GO:0071588: hydrogen peroxide mediated signaling pathway | 8.25E-05 |
| 18 | GO:0000023: maltose metabolic process | 8.25E-05 |
| 19 | GO:0000025: maltose catabolic process | 8.25E-05 |
| 20 | GO:0005986: sucrose biosynthetic process | 1.54E-04 |
| 21 | GO:0005976: polysaccharide metabolic process | 1.97E-04 |
| 22 | GO:0010353: response to trehalose | 1.97E-04 |
| 23 | GO:0006636: unsaturated fatty acid biosynthetic process | 2.22E-04 |
| 24 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.75E-04 |
| 25 | GO:0061077: chaperone-mediated protein folding | 3.03E-04 |
| 26 | GO:0006518: peptide metabolic process | 3.29E-04 |
| 27 | GO:0006081: cellular aldehyde metabolic process | 3.29E-04 |
| 28 | GO:0000302: response to reactive oxygen species | 6.09E-04 |
| 29 | GO:0045727: positive regulation of translation | 6.32E-04 |
| 30 | GO:0006633: fatty acid biosynthetic process | 6.81E-04 |
| 31 | GO:0006461: protein complex assembly | 8.00E-04 |
| 32 | GO:0010027: thylakoid membrane organization | 8.68E-04 |
| 33 | GO:0016311: dephosphorylation | 1.06E-03 |
| 34 | GO:0018298: protein-chromophore linkage | 1.12E-03 |
| 35 | GO:0010189: vitamin E biosynthetic process | 1.16E-03 |
| 36 | GO:0009854: oxidative photosynthetic carbon pathway | 1.16E-03 |
| 37 | GO:0010019: chloroplast-nucleus signaling pathway | 1.16E-03 |
| 38 | GO:0010218: response to far red light | 1.22E-03 |
| 39 | GO:0009631: cold acclimation | 1.28E-03 |
| 40 | GO:0009610: response to symbiotic fungus | 1.36E-03 |
| 41 | GO:0009637: response to blue light | 1.40E-03 |
| 42 | GO:0034599: cellular response to oxidative stress | 1.46E-03 |
| 43 | GO:0030091: protein repair | 1.57E-03 |
| 44 | GO:0009657: plastid organization | 1.79E-03 |
| 45 | GO:0032544: plastid translation | 1.79E-03 |
| 46 | GO:0010114: response to red light | 1.79E-03 |
| 47 | GO:0006098: pentose-phosphate shunt | 2.02E-03 |
| 48 | GO:0006754: ATP biosynthetic process | 2.02E-03 |
| 49 | GO:0010205: photoinhibition | 2.26E-03 |
| 50 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.77E-03 |
| 51 | GO:0000272: polysaccharide catabolic process | 2.77E-03 |
| 52 | GO:0009750: response to fructose | 2.77E-03 |
| 53 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.77E-03 |
| 54 | GO:0009725: response to hormone | 3.31E-03 |
| 55 | GO:0010143: cutin biosynthetic process | 3.59E-03 |
| 56 | GO:0019253: reductive pentose-phosphate cycle | 3.59E-03 |
| 57 | GO:0010207: photosystem II assembly | 3.59E-03 |
| 58 | GO:0009266: response to temperature stimulus | 3.59E-03 |
| 59 | GO:0005985: sucrose metabolic process | 3.88E-03 |
| 60 | GO:0010025: wax biosynthetic process | 4.18E-03 |
| 61 | GO:0042744: hydrogen peroxide catabolic process | 4.83E-03 |
| 62 | GO:0009735: response to cytokinin | 5.17E-03 |
| 63 | GO:0035428: hexose transmembrane transport | 5.45E-03 |
| 64 | GO:0006810: transport | 5.65E-03 |
| 65 | GO:0042631: cellular response to water deprivation | 6.83E-03 |
| 66 | GO:0046323: glucose import | 7.20E-03 |
| 67 | GO:0015986: ATP synthesis coupled proton transport | 7.57E-03 |
| 68 | GO:0009658: chloroplast organization | 9.05E-03 |
| 69 | GO:0080167: response to karrikin | 1.12E-02 |
| 70 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.12E-02 |
| 71 | GO:0010311: lateral root formation | 1.35E-02 |
| 72 | GO:0006979: response to oxidative stress | 1.43E-02 |
| 73 | GO:0009853: photorespiration | 1.54E-02 |
| 74 | GO:0006629: lipid metabolic process | 1.66E-02 |
| 75 | GO:0006631: fatty acid metabolic process | 1.74E-02 |
| 76 | GO:0009744: response to sucrose | 1.84E-02 |
| 77 | GO:0009409: response to cold | 2.08E-02 |
| 78 | GO:0006364: rRNA processing | 2.28E-02 |
| 79 | GO:0046686: response to cadmium ion | 2.48E-02 |
| 80 | GO:0006096: glycolytic process | 2.56E-02 |
| 81 | GO:0045893: positive regulation of transcription, DNA-templated | 3.39E-02 |
| 82 | GO:0007623: circadian rhythm | 4.32E-02 |
| 83 | GO:0016310: phosphorylation | 4.35E-02 |
| 84 | GO:0010468: regulation of gene expression | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 3 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 4 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 5 | GO:0010297: heteropolysaccharide binding | 3.72E-07 |
| 6 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.72E-07 |
| 7 | GO:0005528: FK506 binding | 6.23E-06 |
| 8 | GO:0004130: cytochrome-c peroxidase activity | 1.65E-05 |
| 9 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 8.11E-05 |
| 10 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 8.25E-05 |
| 11 | GO:0045485: omega-6 fatty acid desaturase activity | 8.25E-05 |
| 12 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 8.25E-05 |
| 13 | GO:0004134: 4-alpha-glucanotransferase activity | 8.25E-05 |
| 14 | GO:0004645: phosphorylase activity | 8.25E-05 |
| 15 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 8.25E-05 |
| 16 | GO:0050521: alpha-glucan, water dikinase activity | 8.25E-05 |
| 17 | GO:0008184: glycogen phosphorylase activity | 8.25E-05 |
| 18 | GO:0018708: thiol S-methyltransferase activity | 1.97E-04 |
| 19 | GO:0016630: protochlorophyllide reductase activity | 1.97E-04 |
| 20 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 1.97E-04 |
| 21 | GO:0042389: omega-3 fatty acid desaturase activity | 1.97E-04 |
| 22 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.98E-04 |
| 23 | GO:0031409: pigment binding | 2.22E-04 |
| 24 | GO:0070402: NADPH binding | 3.29E-04 |
| 25 | GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity | 3.29E-04 |
| 26 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.29E-04 |
| 27 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 4.75E-04 |
| 28 | GO:0016851: magnesium chelatase activity | 4.75E-04 |
| 29 | GO:0016168: chlorophyll binding | 9.14E-04 |
| 30 | GO:0004029: aldehyde dehydrogenase (NAD) activity | 9.77E-04 |
| 31 | GO:0016688: L-ascorbate peroxidase activity | 9.77E-04 |
| 32 | GO:2001070: starch binding | 9.77E-04 |
| 33 | GO:0004332: fructose-bisphosphate aldolase activity | 9.77E-04 |
| 34 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.16E-03 |
| 35 | GO:0102391: decanoate--CoA ligase activity | 1.16E-03 |
| 36 | GO:0004602: glutathione peroxidase activity | 1.16E-03 |
| 37 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.36E-03 |
| 38 | GO:0004033: aldo-keto reductase (NADP) activity | 1.57E-03 |
| 39 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.79E-03 |
| 40 | GO:0030234: enzyme regulator activity | 2.51E-03 |
| 41 | GO:0015386: potassium:proton antiporter activity | 2.77E-03 |
| 42 | GO:0044183: protein binding involved in protein folding | 2.77E-03 |
| 43 | GO:0047372: acylglycerol lipase activity | 2.77E-03 |
| 44 | GO:0004565: beta-galactosidase activity | 3.31E-03 |
| 45 | GO:0031072: heat shock protein binding | 3.31E-03 |
| 46 | GO:0019843: rRNA binding | 4.25E-03 |
| 47 | GO:0016491: oxidoreductase activity | 4.79E-03 |
| 48 | GO:0015079: potassium ion transmembrane transporter activity | 4.80E-03 |
| 49 | GO:0003756: protein disulfide isomerase activity | 6.13E-03 |
| 50 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 7.20E-03 |
| 51 | GO:0005355: glucose transmembrane transporter activity | 7.57E-03 |
| 52 | GO:0050662: coenzyme binding | 7.57E-03 |
| 53 | GO:0004872: receptor activity | 7.95E-03 |
| 54 | GO:0048038: quinone binding | 8.33E-03 |
| 55 | GO:0004222: metalloendopeptidase activity | 1.39E-02 |
| 56 | GO:0003993: acid phosphatase activity | 1.59E-02 |
| 57 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.95E-02 |
| 58 | GO:0051082: unfolded protein binding | 2.93E-02 |
| 59 | GO:0046872: metal ion binding | 2.93E-02 |
| 60 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.50E-02 |
| 61 | GO:0016787: hydrolase activity | 3.69E-02 |
| 62 | GO:0030170: pyridoxal phosphate binding | 3.70E-02 |
| 63 | GO:0015144: carbohydrate transmembrane transporter activity | 3.90E-02 |
| 64 | GO:0005351: sugar:proton symporter activity | 4.25E-02 |
| 65 | GO:0003743: translation initiation factor activity | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009534: chloroplast thylakoid | 2.72E-36 |
| 3 | GO:0009507: chloroplast | 1.41E-34 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.23E-32 |
| 5 | GO:0009941: chloroplast envelope | 7.85E-21 |
| 6 | GO:0009579: thylakoid | 8.60E-16 |
| 7 | GO:0009570: chloroplast stroma | 6.23E-10 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.56E-09 |
| 9 | GO:0031977: thylakoid lumen | 2.79E-09 |
| 10 | GO:0010287: plastoglobule | 5.21E-08 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 6.94E-07 |
| 12 | GO:0031969: chloroplast membrane | 1.28E-06 |
| 13 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.97E-04 |
| 14 | GO:0030076: light-harvesting complex | 1.98E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 3.29E-04 |
| 16 | GO:0009706: chloroplast inner membrane | 3.84E-04 |
| 17 | GO:0009522: photosystem I | 5.32E-04 |
| 18 | GO:0009523: photosystem II | 5.70E-04 |
| 19 | GO:0009544: chloroplast ATP synthase complex | 6.32E-04 |
| 20 | GO:0010319: stromule | 7.76E-04 |
| 21 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 9.77E-04 |
| 22 | GO:0016020: membrane | 1.06E-03 |
| 23 | GO:0009533: chloroplast stromal thylakoid | 1.36E-03 |
| 24 | GO:0009538: photosystem I reaction center | 1.57E-03 |
| 25 | GO:0016021: integral component of membrane | 1.70E-03 |
| 26 | GO:0030095: chloroplast photosystem II | 3.59E-03 |
| 27 | GO:0042651: thylakoid membrane | 4.80E-03 |
| 28 | GO:0015935: small ribosomal subunit | 5.12E-03 |
| 29 | GO:0009707: chloroplast outer membrane | 1.30E-02 |
| 30 | GO:0048046: apoplast | 2.21E-02 |