Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G29290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
2GO:0046865: terpenoid transport0.00E+00
3GO:0018063: cytochrome c-heme linkage0.00E+00
4GO:0051553: flavone biosynthetic process0.00E+00
5GO:0010324: membrane invagination0.00E+00
6GO:0010055: atrichoblast differentiation0.00E+00
7GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
8GO:1902001: fatty acid transmembrane transport0.00E+00
9GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
10GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
11GO:0010273: detoxification of copper ion0.00E+00
12GO:0009312: oligosaccharide biosynthetic process0.00E+00
13GO:0015690: aluminum cation transport0.00E+00
14GO:0010112: regulation of systemic acquired resistance8.18E-11
15GO:0051707: response to other organism5.69E-06
16GO:0009611: response to wounding1.54E-05
17GO:0071456: cellular response to hypoxia2.38E-05
18GO:0006952: defense response4.35E-05
19GO:0042742: defense response to bacterium4.58E-05
20GO:0001676: long-chain fatty acid metabolic process6.33E-05
21GO:0009617: response to bacterium2.12E-04
22GO:0009620: response to fungus2.30E-04
23GO:0009643: photosynthetic acclimation2.44E-04
24GO:0009759: indole glucosinolate biosynthetic process2.44E-04
25GO:0008152: metabolic process4.07E-04
26GO:1900057: positive regulation of leaf senescence4.22E-04
27GO:0033306: phytol metabolic process4.37E-04
28GO:0046246: terpene biosynthetic process4.37E-04
29GO:0009700: indole phytoalexin biosynthetic process4.37E-04
30GO:0050691: regulation of defense response to virus by host4.37E-04
31GO:0034214: protein hexamerization4.37E-04
32GO:1990542: mitochondrial transmembrane transport4.37E-04
33GO:0032107: regulation of response to nutrient levels4.37E-04
34GO:0015760: glucose-6-phosphate transport4.37E-04
35GO:1990641: response to iron ion starvation4.37E-04
36GO:0006979: response to oxidative stress6.37E-04
37GO:0010120: camalexin biosynthetic process6.43E-04
38GO:0009636: response to toxic substance6.60E-04
39GO:0010150: leaf senescence7.50E-04
40GO:0009835: fruit ripening7.70E-04
41GO:0010193: response to ozone7.90E-04
42GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.07E-04
43GO:0015908: fatty acid transport9.44E-04
44GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine9.44E-04
45GO:0044419: interspecies interaction between organisms9.44E-04
46GO:0019725: cellular homeostasis9.44E-04
47GO:0015712: hexose phosphate transport9.44E-04
48GO:0015012: heparan sulfate proteoglycan biosynthetic process9.44E-04
49GO:0051258: protein polymerization9.44E-04
50GO:0071668: plant-type cell wall assembly9.44E-04
51GO:0010155: regulation of proton transport9.44E-04
52GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.44E-04
53GO:0009838: abscission9.44E-04
54GO:0080181: lateral root branching9.44E-04
55GO:0006024: glycosaminoglycan biosynthetic process9.44E-04
56GO:0055088: lipid homeostasis9.44E-04
57GO:0006101: citrate metabolic process9.44E-04
58GO:0007166: cell surface receptor signaling pathway9.48E-04
59GO:0051607: defense response to virus1.17E-03
60GO:0055114: oxidation-reduction process1.19E-03
61GO:1903507: negative regulation of nucleic acid-templated transcription1.21E-03
62GO:0009684: indoleacetic acid biosynthetic process1.21E-03
63GO:0009751: response to salicylic acid1.23E-03
64GO:0006954: inflammatory response1.54E-03
65GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.54E-03
66GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.54E-03
67GO:0035436: triose phosphate transmembrane transport1.54E-03
68GO:0080163: regulation of protein serine/threonine phosphatase activity1.54E-03
69GO:0071398: cellular response to fatty acid1.54E-03
70GO:0010186: positive regulation of cellular defense response1.54E-03
71GO:0015783: GDP-fucose transport1.54E-03
72GO:0010476: gibberellin mediated signaling pathway1.54E-03
73GO:0010325: raffinose family oligosaccharide biosynthetic process1.54E-03
74GO:0015692: lead ion transport1.54E-03
75GO:0015695: organic cation transport1.54E-03
76GO:0015714: phosphoenolpyruvate transport1.54E-03
77GO:0080168: abscisic acid transport1.54E-03
78GO:0050832: defense response to fungus1.67E-03
79GO:0010731: protein glutathionylation2.22E-03
80GO:0015696: ammonium transport2.22E-03
81GO:0071323: cellular response to chitin2.22E-03
82GO:0080024: indolebutyric acid metabolic process2.22E-03
83GO:0010116: positive regulation of abscisic acid biosynthetic process2.22E-03
84GO:0070301: cellular response to hydrogen peroxide2.22E-03
85GO:0002239: response to oomycetes2.22E-03
86GO:0000162: tryptophan biosynthetic process2.23E-03
87GO:0010200: response to chitin2.50E-03
88GO:0015713: phosphoglycerate transport2.99E-03
89GO:0015867: ATP transport2.99E-03
90GO:1901141: regulation of lignin biosynthetic process2.99E-03
91GO:0080037: negative regulation of cytokinin-activated signaling pathway2.99E-03
92GO:0010109: regulation of photosynthesis2.99E-03
93GO:0060548: negative regulation of cell death2.99E-03
94GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.99E-03
95GO:0048830: adventitious root development2.99E-03
96GO:1901002: positive regulation of response to salt stress2.99E-03
97GO:0072488: ammonium transmembrane transport2.99E-03
98GO:2000022: regulation of jasmonic acid mediated signaling pathway3.28E-03
99GO:0009693: ethylene biosynthetic process3.58E-03
100GO:0034052: positive regulation of plant-type hypersensitive response3.83E-03
101GO:2000762: regulation of phenylpropanoid metabolic process3.83E-03
102GO:0006097: glyoxylate cycle3.83E-03
103GO:0009229: thiamine diphosphate biosynthetic process3.83E-03
104GO:0031347: regulation of defense response4.20E-03
105GO:0033365: protein localization to organelle4.74E-03
106GO:0009228: thiamine biosynthetic process4.74E-03
107GO:0015866: ADP transport4.74E-03
108GO:0010256: endomembrane system organization4.74E-03
109GO:0009753: response to jasmonic acid5.30E-03
110GO:0048444: floral organ morphogenesis5.72E-03
111GO:0030643: cellular phosphate ion homeostasis5.72E-03
112GO:0002229: defense response to oomycetes6.08E-03
113GO:0006635: fatty acid beta-oxidation6.08E-03
114GO:0009626: plant-type hypersensitive response6.47E-03
115GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.76E-03
116GO:1902074: response to salt6.76E-03
117GO:0010044: response to aluminum ion6.76E-03
118GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.76E-03
119GO:0043090: amino acid import6.76E-03
120GO:1900056: negative regulation of leaf senescence6.76E-03
121GO:0009819: drought recovery7.86E-03
122GO:0009850: auxin metabolic process7.86E-03
123GO:0006605: protein targeting7.86E-03
124GO:0030162: regulation of proteolysis7.86E-03
125GO:0006102: isocitrate metabolic process7.86E-03
126GO:0030091: protein repair7.86E-03
127GO:0006997: nucleus organization9.03E-03
128GO:0010204: defense response signaling pathway, resistance gene-independent9.03E-03
129GO:0017004: cytochrome complex assembly9.03E-03
130GO:0010208: pollen wall assembly9.03E-03
131GO:0007275: multicellular organism development9.26E-03
132GO:0080167: response to karrikin9.27E-03
133GO:0010029: regulation of seed germination9.33E-03
134GO:0019432: triglyceride biosynthetic process1.03E-02
135GO:0009056: catabolic process1.03E-02
136GO:0015780: nucleotide-sugar transport1.03E-02
137GO:0007338: single fertilization1.03E-02
138GO:0044550: secondary metabolite biosynthetic process1.05E-02
139GO:0016311: dephosphorylation1.10E-02
140GO:0009737: response to abscisic acid1.11E-02
141GO:0048268: clathrin coat assembly1.15E-02
142GO:0008202: steroid metabolic process1.15E-02
143GO:0090332: stomatal closure1.15E-02
144GO:0009813: flavonoid biosynthetic process1.21E-02
145GO:0006468: protein phosphorylation1.23E-02
146GO:0006810: transport1.25E-02
147GO:0009407: toxin catabolic process1.27E-02
148GO:0009870: defense response signaling pathway, resistance gene-dependent1.29E-02
149GO:0006032: chitin catabolic process1.29E-02
150GO:0019538: protein metabolic process1.29E-02
151GO:0009641: shade avoidance1.29E-02
152GO:0010629: negative regulation of gene expression1.29E-02
153GO:0051555: flavonol biosynthetic process1.29E-02
154GO:0009682: induced systemic resistance1.43E-02
155GO:0052544: defense response by callose deposition in cell wall1.43E-02
156GO:0040008: regulation of growth1.43E-02
157GO:0019684: photosynthesis, light reaction1.43E-02
158GO:0009089: lysine biosynthetic process via diaminopimelate1.43E-02
159GO:0006099: tricarboxylic acid cycle1.53E-02
160GO:0002213: defense response to insect1.57E-02
161GO:0045037: protein import into chloroplast stroma1.57E-02
162GO:0000266: mitochondrial fission1.57E-02
163GO:0006839: mitochondrial transport1.67E-02
164GO:0010102: lateral root morphogenesis1.72E-02
165GO:0006897: endocytosis1.75E-02
166GO:0006631: fatty acid metabolic process1.75E-02
167GO:0002237: response to molecule of bacterial origin1.87E-02
168GO:0046688: response to copper ion2.03E-02
169GO:0090351: seedling development2.03E-02
170GO:0042343: indole glucosinolate metabolic process2.03E-02
171GO:0006855: drug transmembrane transport2.21E-02
172GO:2000377: regulation of reactive oxygen species metabolic process2.36E-02
173GO:0015031: protein transport2.46E-02
174GO:0009695: jasmonic acid biosynthetic process2.54E-02
175GO:0006825: copper ion transport2.54E-02
176GO:0051302: regulation of cell division2.54E-02
177GO:0006508: proteolysis2.55E-02
178GO:0009809: lignin biosynthetic process2.56E-02
179GO:0016114: terpenoid biosynthetic process2.71E-02
180GO:0016998: cell wall macromolecule catabolic process2.71E-02
181GO:0098542: defense response to other organism2.71E-02
182GO:0009269: response to desiccation2.71E-02
183GO:0031348: negative regulation of defense response2.89E-02
184GO:0016226: iron-sulfur cluster assembly2.89E-02
185GO:0009625: response to insect3.08E-02
186GO:0006012: galactose metabolic process3.08E-02
187GO:0070417: cellular response to cold3.46E-02
188GO:0000271: polysaccharide biosynthetic process3.66E-02
189GO:0042391: regulation of membrane potential3.66E-02
190GO:0000413: protein peptidyl-prolyl isomerization3.66E-02
191GO:0045489: pectin biosynthetic process3.86E-02
192GO:0006520: cellular amino acid metabolic process3.86E-02
193GO:0009414: response to water deprivation4.02E-02
194GO:0048544: recognition of pollen4.06E-02
195GO:0009646: response to absence of light4.06E-02
196GO:0015979: photosynthesis4.06E-02
197GO:0009749: response to glucose4.27E-02
198GO:0006623: protein targeting to vacuole4.27E-02
199GO:0071554: cell wall organization or biogenesis4.48E-02
200GO:0000302: response to reactive oxygen species4.48E-02
201GO:0006891: intra-Golgi vesicle-mediated transport4.48E-02
202GO:0019761: glucosinolate biosynthetic process4.69E-02
203GO:0045893: positive regulation of transcription, DNA-templated4.74E-02
RankGO TermAdjusted P value
1GO:0050334: thiaminase activity0.00E+00
2GO:0047681: aryl-alcohol dehydrogenase (NADP+) activity0.00E+00
3GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
4GO:0097008: (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity0.00E+00
5GO:0033759: flavone synthase activity0.00E+00
6GO:0097007: 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity0.00E+00
7GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
8GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
9GO:0010178: IAA-amino acid conjugate hydrolase activity6.33E-05
10GO:0102391: decanoate--CoA ligase activity3.27E-04
11GO:0016758: transferase activity, transferring hexosyl groups3.99E-04
12GO:0004467: long-chain fatty acid-CoA ligase activity4.22E-04
13GO:2001147: camalexin binding4.37E-04
14GO:0015245: fatty acid transporter activity4.37E-04
15GO:0010285: L,L-diaminopimelate aminotransferase activity4.37E-04
16GO:0016920: pyroglutamyl-peptidase activity4.37E-04
17GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity4.37E-04
18GO:0016229: steroid dehydrogenase activity4.37E-04
19GO:0010179: IAA-Ala conjugate hydrolase activity4.37E-04
20GO:2001227: quercitrin binding4.37E-04
21GO:0070401: NADP+ binding4.37E-04
22GO:0052747: sinapyl alcohol dehydrogenase activity5.27E-04
23GO:0004033: aldo-keto reductase (NADP) activity5.27E-04
24GO:0047893: flavonol 3-O-glucosyltransferase activity5.27E-04
25GO:0008194: UDP-glycosyltransferase activity9.12E-04
26GO:0032934: sterol binding9.44E-04
27GO:0015036: disulfide oxidoreductase activity9.44E-04
28GO:0050736: O-malonyltransferase activity9.44E-04
29GO:0010331: gibberellin binding9.44E-04
30GO:0047364: desulfoglucosinolate sulfotransferase activity9.44E-04
31GO:0003994: aconitate hydratase activity9.44E-04
32GO:0015152: glucose-6-phosphate transmembrane transporter activity9.44E-04
33GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity9.44E-04
34GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity9.44E-04
35GO:0008237: metallopeptidase activity1.08E-03
36GO:0080043: quercetin 3-O-glucosyltransferase activity1.29E-03
37GO:0080044: quercetin 7-O-glucosyltransferase activity1.29E-03
38GO:0045551: cinnamyl-alcohol dehydrogenase activity1.39E-03
39GO:0032403: protein complex binding1.54E-03
40GO:0030247: polysaccharide binding1.54E-03
41GO:0071917: triose-phosphate transmembrane transporter activity1.54E-03
42GO:0005457: GDP-fucose transmembrane transporter activity1.54E-03
43GO:0004324: ferredoxin-NADP+ reductase activity1.54E-03
44GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.54E-03
45GO:0008106: alcohol dehydrogenase (NADP+) activity2.22E-03
46GO:0017077: oxidative phosphorylation uncoupler activity2.22E-03
47GO:0035529: NADH pyrophosphatase activity2.22E-03
48GO:0001046: core promoter sequence-specific DNA binding2.47E-03
49GO:0003714: transcription corepressor activity2.47E-03
50GO:0019825: oxygen binding2.56E-03
51GO:0009916: alternative oxidase activity2.99E-03
52GO:0015120: phosphoglycerate transmembrane transporter activity2.99E-03
53GO:0004834: tryptophan synthase activity2.99E-03
54GO:0003995: acyl-CoA dehydrogenase activity2.99E-03
55GO:0035251: UDP-glucosyltransferase activity3.00E-03
56GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.08E-03
57GO:0015297: antiporter activity3.20E-03
58GO:0042803: protein homodimerization activity3.52E-03
59GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.71E-03
60GO:0004722: protein serine/threonine phosphatase activity3.81E-03
61GO:0018685: alkane 1-monooxygenase activity3.83E-03
62GO:0003997: acyl-CoA oxidase activity3.83E-03
63GO:0005496: steroid binding3.83E-03
64GO:0047631: ADP-ribose diphosphatase activity3.83E-03
65GO:0004499: N,N-dimethylaniline monooxygenase activity3.89E-03
66GO:0005509: calcium ion binding4.62E-03
67GO:0000210: NAD+ diphosphatase activity4.74E-03
68GO:0008519: ammonium transmembrane transporter activity4.74E-03
69GO:0005506: iron ion binding5.32E-03
70GO:0020037: heme binding5.54E-03
71GO:0004144: diacylglycerol O-acyltransferase activity5.72E-03
72GO:0005347: ATP transmembrane transporter activity5.72E-03
73GO:0003978: UDP-glucose 4-epimerase activity5.72E-03
74GO:0008113: peptide-methionine (S)-S-oxide reductase activity5.72E-03
75GO:0015217: ADP transmembrane transporter activity5.72E-03
76GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.72E-03
77GO:0043295: glutathione binding6.76E-03
78GO:0102425: myricetin 3-O-glucosyltransferase activity6.76E-03
79GO:0102360: daphnetin 3-O-glucosyltransferase activity6.76E-03
80GO:0016791: phosphatase activity7.38E-03
81GO:0008483: transaminase activity7.84E-03
82GO:0005544: calcium-dependent phospholipid binding7.86E-03
83GO:0004714: transmembrane receptor protein tyrosine kinase activity7.86E-03
84GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity7.86E-03
85GO:0005507: copper ion binding7.89E-03
86GO:0043565: sequence-specific DNA binding8.05E-03
87GO:0046872: metal ion binding8.81E-03
88GO:0008142: oxysterol binding9.03E-03
89GO:0004497: monooxygenase activity9.27E-03
90GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.03E-02
91GO:0030170: pyridoxal phosphate binding1.15E-02
92GO:0004864: protein phosphatase inhibitor activity1.29E-02
93GO:0004568: chitinase activity1.29E-02
94GO:0005545: 1-phosphatidylinositol binding1.29E-02
95GO:0015020: glucuronosyltransferase activity1.29E-02
96GO:0003993: acid phosphatase activity1.53E-02
97GO:0051539: 4 iron, 4 sulfur cluster binding1.67E-02
98GO:0050661: NADP binding1.67E-02
99GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.72E-02
100GO:0005315: inorganic phosphate transmembrane transporter activity1.72E-02
101GO:0005388: calcium-transporting ATPase activity1.72E-02
102GO:0016301: kinase activity1.79E-02
103GO:0016740: transferase activity1.79E-02
104GO:0004364: glutathione transferase activity1.82E-02
105GO:0005215: transporter activity1.89E-02
106GO:0008146: sulfotransferase activity2.03E-02
107GO:0030552: cAMP binding2.03E-02
108GO:0030553: cGMP binding2.03E-02
109GO:0008061: chitin binding2.03E-02
110GO:0003712: transcription cofactor activity2.03E-02
111GO:0005198: structural molecule activity2.13E-02
112GO:0005524: ATP binding2.33E-02
113GO:0051536: iron-sulfur cluster binding2.36E-02
114GO:0031418: L-ascorbic acid binding2.36E-02
115GO:0005216: ion channel activity2.54E-02
116GO:0005516: calmodulin binding2.56E-02
117GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.89E-02
118GO:0008810: cellulase activity3.08E-02
119GO:0050660: flavin adenine dinucleotide binding3.16E-02
120GO:0016757: transferase activity, transferring glycosyl groups3.18E-02
121GO:0005249: voltage-gated potassium channel activity3.66E-02
122GO:0030551: cyclic nucleotide binding3.66E-02
123GO:0030276: clathrin binding3.86E-02
124GO:0004871: signal transducer activity4.55E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane4.54E-06
2GO:0016021: integral component of membrane7.10E-06
3GO:0005794: Golgi apparatus6.95E-05
4GO:0045252: oxoglutarate dehydrogenase complex4.37E-04
5GO:0031314: extrinsic component of mitochondrial inner membrane9.44E-04
6GO:0005901: caveola9.44E-04
7GO:0017119: Golgi transport complex1.06E-03
8GO:0005743: mitochondrial inner membrane1.09E-03
9GO:0043231: intracellular membrane-bounded organelle1.53E-03
10GO:0030658: transport vesicle membrane2.22E-03
11GO:0000813: ESCRT I complex3.83E-03
12GO:0000164: protein phosphatase type 1 complex3.83E-03
13GO:0046658: anchored component of plasma membrane5.27E-03
14GO:0031965: nuclear membrane5.68E-03
15GO:0009986: cell surface6.76E-03
16GO:0009506: plasmodesma8.06E-03
17GO:0005779: integral component of peroxisomal membrane9.03E-03
18GO:0005788: endoplasmic reticulum lumen9.33E-03
19GO:0005802: trans-Golgi network9.92E-03
20GO:0005768: endosome1.27E-02
21GO:0005789: endoplasmic reticulum membrane1.36E-02
22GO:0005777: peroxisome1.62E-02
23GO:0005795: Golgi stack2.03E-02
24GO:0016020: membrane2.40E-02
25GO:0070469: respiratory chain2.54E-02
26GO:0005887: integral component of plasma membrane2.63E-02
27GO:0005741: mitochondrial outer membrane2.71E-02
28GO:0005905: clathrin-coated pit2.71E-02
29GO:0005774: vacuolar membrane3.31E-02
30GO:0030136: clathrin-coated vesicle3.46E-02
31GO:0009706: chloroplast inner membrane3.64E-02
32GO:0005783: endoplasmic reticulum3.86E-02
33GO:0009504: cell plate4.27E-02
34GO:0019898: extrinsic component of membrane4.27E-02
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Gene type



Gene DE type