co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006592: ornithine biosynthetic process	0.00E+00
2	GO:0006858: extracellular transport	0.00E+00
3	GO:0036258: multivesicular body assembly	0.00E+00
4	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
5	GO:0006511: ubiquitin-dependent protein catabolic process	3.74E-07
6	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.80E-05
7	GO:0006144: purine nucleobase metabolic process	1.37E-04
8	GO:0080120: CAAX-box protein maturation	1.37E-04
9	GO:0071586: CAAX-box protein processing	1.37E-04
10	GO:0019628: urate catabolic process	1.37E-04
11	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.37E-04
12	GO:0035494: SNARE complex disassembly	1.37E-04
13	GO:0046939: nucleotide phosphorylation	3.16E-04
14	GO:0006695: cholesterol biosynthetic process	3.16E-04
15	GO:0010372: positive regulation of gibberellin biosynthetic process	3.16E-04
16	GO:0051788: response to misfolded protein	3.16E-04
17	GO:0043132: NAD transport	3.16E-04
18	GO:0044375: regulation of peroxisome size	5.20E-04
19	GO:0090630: activation of GTPase activity	5.20E-04
20	GO:0010359: regulation of anion channel activity	5.20E-04
21	GO:0043617: cellular response to sucrose starvation	5.20E-04
22	GO:0051603: proteolysis involved in cellular protein catabolic process	6.16E-04
23	GO:0030433: ubiquitin-dependent ERAD pathway	6.50E-04
24	GO:0070676: intralumenal vesicle formation	7.44E-04
25	GO:0001676: long-chain fatty acid metabolic process	7.44E-04
26	GO:0015858: nucleoside transport	7.44E-04
27	GO:0009647: skotomorphogenesis	7.44E-04
28	GO:0015031: protein transport	9.08E-04
29	GO:0045454: cell redox homeostasis	9.55E-04
30	GO:0006536: glutamate metabolic process	9.85E-04
31	GO:0010363: regulation of plant-type hypersensitive response	9.85E-04
32	GO:0009646: response to absence of light	1.03E-03
33	GO:0006461: protein complex assembly	1.25E-03
34	GO:0018279: protein N-linked glycosylation via asparagine	1.25E-03
35	GO:0006564: L-serine biosynthetic process	1.25E-03
36	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.25E-03
37	GO:0030163: protein catabolic process	1.33E-03
38	GO:0046686: response to cadmium ion	1.35E-03
39	GO:0043248: proteasome assembly	1.53E-03
40	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.53E-03
41	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.83E-03
42	GO:0048528: post-embryonic root development	2.15E-03
43	GO:0007050: cell cycle arrest	2.15E-03
44	GO:0000338: protein deneddylation	2.15E-03
45	GO:0006499: N-terminal protein myristoylation	2.40E-03
46	GO:0031540: regulation of anthocyanin biosynthetic process	2.49E-03
47	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.49E-03
48	GO:0006402: mRNA catabolic process	2.49E-03
49	GO:0006972: hyperosmotic response	2.85E-03
50	GO:0010120: camalexin biosynthetic process	2.85E-03
51	GO:0006526: arginine biosynthetic process	2.85E-03
52	GO:0009826: unidimensional cell growth	2.99E-03
53	GO:0046685: response to arsenic-containing substance	3.22E-03
54	GO:0009821: alkaloid biosynthetic process	3.22E-03
55	GO:0043069: negative regulation of programmed cell death	4.00E-03
56	GO:0009682: induced systemic resistance	4.42E-03
57	GO:0010072: primary shoot apical meristem specification	4.42E-03
58	GO:0072593: reactive oxygen species metabolic process	4.42E-03
59	GO:0043085: positive regulation of catalytic activity	4.42E-03
60	GO:0009664: plant-type cell wall organization	4.43E-03
61	GO:0055085: transmembrane transport	4.48E-03
62	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	4.85E-03
63	GO:0006790: sulfur compound metabolic process	4.85E-03
64	GO:0006820: anion transport	4.85E-03
65	GO:0006829: zinc II ion transport	5.30E-03
66	GO:0006807: nitrogen compound metabolic process	5.30E-03
67	GO:0006096: glycolytic process	5.62E-03
68	GO:0034605: cellular response to heat	5.76E-03
69	GO:0046854: phosphatidylinositol phosphorylation	6.23E-03
70	GO:0007031: peroxisome organization	6.23E-03
71	GO:0000162: tryptophan biosynthetic process	6.71E-03
72	GO:0034976: response to endoplasmic reticulum stress	6.71E-03
73	GO:0042023: DNA endoreduplication	6.71E-03
74	GO:0015992: proton transport	8.26E-03
75	GO:0009058: biosynthetic process	8.92E-03
76	GO:0040007: growth	9.35E-03
77	GO:0010227: floral organ abscission	9.35E-03
78	GO:0009411: response to UV	9.35E-03
79	GO:0042744: hydrogen peroxide catabolic process	9.64E-03
80	GO:0055114: oxidation-reduction process	9.88E-03
81	GO:0010089: xylem development	9.92E-03
82	GO:0009561: megagametogenesis	9.92E-03
83	GO:0009306: protein secretion	9.92E-03
84	GO:0042147: retrograde transport, endosome to Golgi	1.05E-02
85	GO:0051028: mRNA transport	1.05E-02
86	GO:0010051: xylem and phloem pattern formation	1.11E-02
87	GO:0010118: stomatal movement	1.11E-02
88	GO:0048868: pollen tube development	1.17E-02
89	GO:0006662: glycerol ether metabolic process	1.17E-02
90	GO:0061025: membrane fusion	1.23E-02
91	GO:0009735: response to cytokinin	1.25E-02
92	GO:0055072: iron ion homeostasis	1.29E-02
93	GO:0048825: cotyledon development	1.29E-02
94	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.31E-02
95	GO:0009739: response to gibberellin	1.31E-02
96	GO:0007166: cell surface receptor signaling pathway	1.34E-02
97	GO:0016132: brassinosteroid biosynthetic process	1.36E-02
98	GO:0010193: response to ozone	1.36E-02
99	GO:0009617: response to bacterium	1.40E-02
100	GO:0031047: gene silencing by RNA	1.42E-02
101	GO:0009611: response to wounding	1.44E-02
102	GO:1901657: glycosyl compound metabolic process	1.49E-02
103	GO:0009567: double fertilization forming a zygote and endosperm	1.55E-02
104	GO:0006914: autophagy	1.55E-02
105	GO:0016579: protein deubiquitination	1.69E-02
106	GO:0009615: response to virus	1.76E-02
107	GO:0016126: sterol biosynthetic process	1.76E-02
108	GO:0009651: response to salt stress	1.88E-02
109	GO:0006950: response to stress	1.98E-02
110	GO:0006888: ER to Golgi vesicle-mediated transport	1.98E-02
111	GO:0010311: lateral root formation	2.20E-02
112	GO:0006811: ion transport	2.28E-02
113	GO:0010043: response to zinc ion	2.36E-02
114	GO:0010119: regulation of stomatal movement	2.36E-02
115	GO:0009867: jasmonic acid mediated signaling pathway	2.51E-02
116	GO:0006099: tricarboxylic acid cycle	2.60E-02
117	GO:0034599: cellular response to oxidative stress	2.60E-02
118	GO:0006839: mitochondrial transport	2.76E-02
119	GO:0030001: metal ion transport	2.76E-02
120	GO:0006886: intracellular protein transport	2.78E-02
121	GO:0006897: endocytosis	2.84E-02
122	GO:0006631: fatty acid metabolic process	2.84E-02
123	GO:0009926: auxin polar transport	3.01E-02
124	GO:0009744: response to sucrose	3.01E-02
125	GO:0009640: photomorphogenesis	3.01E-02
126	GO:0009751: response to salicylic acid	3.28E-02
127	GO:0006855: drug transmembrane transport	3.36E-02
128	GO:0042742: defense response to bacterium	3.39E-02
129	GO:0031347: regulation of defense response	3.45E-02
130	GO:0006397: mRNA processing	3.47E-02
131	GO:0009753: response to jasmonic acid	3.56E-02
132	GO:0009809: lignin biosynthetic process	3.72E-02
133	GO:0009585: red, far-red light phototransduction	3.72E-02
134	GO:0009736: cytokinin-activated signaling pathway	3.72E-02
135	GO:0009620: response to fungus	4.49E-02
136	GO:0050832: defense response to fungus	4.55E-02
137	GO:0009553: embryo sac development	4.68E-02
138	GO:0009624: response to nematode	4.78E-02
139	GO:0018105: peptidyl-serine phosphorylation	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0047598: 7-dehydrocholesterol reductase activity	0.00E+00
2	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
3	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
4	GO:0009918: sterol delta7 reductase activity	0.00E+00
5	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
6	GO:0004846: urate oxidase activity	0.00E+00
7	GO:0044610: FMN transmembrane transporter activity	0.00E+00
8	GO:0008777: acetylornithine deacetylase activity	0.00E+00
9	GO:0004298: threonine-type endopeptidase activity	5.39E-07
10	GO:0036402: proteasome-activating ATPase activity	3.80E-05
11	GO:0008233: peptidase activity	1.03E-04
12	GO:0010013: N-1-naphthylphthalamic acid binding	1.37E-04
13	GO:0048037: cofactor binding	1.37E-04
14	GO:0019786: Atg8-specific protease activity	1.37E-04
15	GO:0015230: FAD transmembrane transporter activity	1.37E-04
16	GO:0030955: potassium ion binding	1.73E-04
17	GO:0004743: pyruvate kinase activity	1.73E-04
18	GO:0004640: phosphoribosylanthranilate isomerase activity	3.16E-04
19	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.16E-04
20	GO:0004566: beta-glucuronidase activity	3.16E-04
21	GO:0015228: coenzyme A transmembrane transporter activity	3.16E-04
22	GO:0004617: phosphoglycerate dehydrogenase activity	3.16E-04
23	GO:0051724: NAD transporter activity	3.16E-04
24	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.16E-04
25	GO:0019779: Atg8 activating enzyme activity	3.16E-04
26	GO:0008517: folic acid transporter activity	3.16E-04
27	GO:0017025: TBP-class protein binding	3.99E-04
28	GO:0052692: raffinose alpha-galactosidase activity	5.20E-04
29	GO:0005483: soluble NSF attachment protein activity	5.20E-04
30	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	5.20E-04
31	GO:0004848: ureidoglycolate hydrolase activity	5.20E-04
32	GO:0004557: alpha-galactosidase activity	5.20E-04
33	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.20E-04
34	GO:0004351: glutamate decarboxylase activity	7.44E-04
35	GO:0019201: nucleotide kinase activity	7.44E-04
36	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.44E-04
37	GO:0019905: syntaxin binding	9.85E-04
38	GO:0019776: Atg8 ligase activity	9.85E-04
39	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.25E-03
40	GO:0080122: AMP transmembrane transporter activity	1.25E-03
41	GO:0004518: nuclease activity	1.25E-03
42	GO:0008565: protein transporter activity	1.51E-03
43	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.53E-03
44	GO:0030332: cyclin binding	1.53E-03
45	GO:0031593: polyubiquitin binding	1.53E-03
46	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.53E-03
47	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.53E-03
48	GO:0015217: ADP transmembrane transporter activity	1.83E-03
49	GO:0051920: peroxiredoxin activity	1.83E-03
50	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.83E-03
51	GO:0102391: decanoate--CoA ligase activity	1.83E-03
52	GO:0004017: adenylate kinase activity	1.83E-03
53	GO:0005347: ATP transmembrane transporter activity	1.83E-03
54	GO:0004656: procollagen-proline 4-dioxygenase activity	1.83E-03
55	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.97E-03
56	GO:0004467: long-chain fatty acid-CoA ligase activity	2.15E-03
57	GO:0015288: porin activity	2.49E-03
58	GO:0016209: antioxidant activity	2.49E-03
59	GO:0008308: voltage-gated anion channel activity	2.85E-03
60	GO:0000166: nucleotide binding	3.11E-03
61	GO:0004601: peroxidase activity	3.14E-03
62	GO:0016844: strictosidine synthase activity	3.60E-03
63	GO:0005198: structural molecule activity	3.97E-03
64	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.00E-03
65	GO:0008047: enzyme activator activity	4.00E-03
66	GO:0004177: aminopeptidase activity	4.42E-03
67	GO:0008559: xenobiotic-transporting ATPase activity	4.42E-03
68	GO:0008794: arsenate reductase (glutaredoxin) activity	4.42E-03
69	GO:0004521: endoribonuclease activity	4.85E-03
70	GO:0004175: endopeptidase activity	5.76E-03
71	GO:0015035: protein disulfide oxidoreductase activity	6.96E-03
72	GO:0008026: ATP-dependent helicase activity	7.16E-03
73	GO:0031418: L-ascorbic acid binding	7.22E-03
74	GO:0043130: ubiquitin binding	7.22E-03
75	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	8.26E-03
76	GO:0030170: pyridoxal phosphate binding	9.39E-03
77	GO:0003756: protein disulfide isomerase activity	9.92E-03
78	GO:0047134: protein-disulfide reductase activity	1.05E-02
79	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.09E-02
80	GO:0005524: ATP binding	1.15E-02
81	GO:0005199: structural constituent of cell wall	1.17E-02
82	GO:0046873: metal ion transmembrane transporter activity	1.17E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	1.23E-02
84	GO:0016853: isomerase activity	1.23E-02
85	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.36E-02
86	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.49E-02
87	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.49E-02
88	GO:0046872: metal ion binding	1.62E-02
89	GO:0008237: metallopeptidase activity	1.62E-02
90	GO:0016597: amino acid binding	1.69E-02
91	GO:0000287: magnesium ion binding	1.78E-02
92	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.90E-02
93	GO:0004683: calmodulin-dependent protein kinase activity	1.98E-02
94	GO:0005096: GTPase activator activity	2.20E-02
95	GO:0004222: metalloendopeptidase activity	2.28E-02
96	GO:0005516: calmodulin binding	2.35E-02
97	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.51E-02
98	GO:0008422: beta-glucosidase activity	2.68E-02
99	GO:0004364: glutathione transferase activity	2.93E-02
100	GO:0035091: phosphatidylinositol binding	3.19E-02
101	GO:0051287: NAD binding	3.45E-02
102	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.72E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	5.28E-11
2	GO:0005839: proteasome core complex	5.39E-07
3	GO:0005829: cytosol	8.80E-07
4	GO:0046861: glyoxysomal membrane	3.53E-06
5	GO:0005774: vacuolar membrane	6.27E-06
6	GO:0005773: vacuole	3.88E-05
7	GO:0031597: cytosolic proteasome complex	5.36E-05
8	GO:0031595: nuclear proteasome complex	7.18E-05
9	GO:0009514: glyoxysome	1.17E-04
10	GO:0016442: RISC complex	1.37E-04
11	GO:0008540: proteasome regulatory particle, base subcomplex	1.73E-04
12	GO:0001673: male germ cell nucleus	3.16E-04
13	GO:0030176: integral component of endoplasmic reticulum membrane	3.99E-04
14	GO:0009530: primary cell wall	5.20E-04
15	GO:0005775: vacuolar lumen	7.44E-04
16	GO:0005776: autophagosome	9.85E-04
17	GO:0000813: ESCRT I complex	1.25E-03
18	GO:0008250: oligosaccharyltransferase complex	1.25E-03
19	GO:0030904: retromer complex	1.53E-03
20	GO:0005794: Golgi apparatus	2.12E-03
21	GO:0000421: autophagosome membrane	2.49E-03
22	GO:0005618: cell wall	2.76E-03
23	GO:0046930: pore complex	2.85E-03
24	GO:0019773: proteasome core complex, alpha-subunit complex	2.85E-03
25	GO:0005779: integral component of peroxisomal membrane	2.85E-03
26	GO:0010494: cytoplasmic stress granule	3.22E-03
27	GO:0008180: COP9 signalosome	3.22E-03
28	GO:0031902: late endosome membrane	3.26E-03
29	GO:0005783: endoplasmic reticulum	3.35E-03
30	GO:0005765: lysosomal membrane	4.42E-03
31	GO:0008541: proteasome regulatory particle, lid subcomplex	4.42E-03
32	GO:0048471: perinuclear region of cytoplasm	4.42E-03
33	GO:0005665: DNA-directed RNA polymerase II, core complex	4.85E-03
34	GO:0005635: nuclear envelope	5.09E-03
35	GO:0000419: DNA-directed RNA polymerase V complex	6.71E-03
36	GO:0005741: mitochondrial outer membrane	8.26E-03
37	GO:0031410: cytoplasmic vesicle	8.79E-03
38	GO:0009505: plant-type cell wall	1.28E-02
39	GO:0005886: plasma membrane	1.54E-02
40	GO:0005778: peroxisomal membrane	1.62E-02
41	GO:0005777: peroxisome	1.67E-02
42	GO:0000932: P-body	1.76E-02
43	GO:0005643: nuclear pore	2.12E-02
44	GO:0016020: membrane	2.24E-02
45	GO:0000325: plant-type vacuole	2.36E-02
46	GO:0031201: SNARE complex	2.84E-02
47	GO:0009506: plasmodesma	3.52E-02
48	GO:0005834: heterotrimeric G-protein complex	4.39E-02