co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G27150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0070979: protein K11-linked ubiquitination	0.00E+00
3	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
4	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
5	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
6	GO:0000372: Group I intron splicing	0.00E+00
7	GO:0006573: valine metabolic process	0.00E+00
8	GO:0080127: fruit septum development	0.00E+00
9	GO:0006114: glycerol biosynthetic process	0.00E+00
10	GO:1905177: tracheary element differentiation	0.00E+00
11	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
12	GO:0000373: Group II intron splicing	1.81E-06
13	GO:1900871: chloroplast mRNA modification	1.35E-05
14	GO:0010239: chloroplast mRNA processing	9.62E-05
15	GO:0010582: floral meristem determinacy	1.75E-04
16	GO:0016123: xanthophyll biosynthetic process	2.52E-04
17	GO:0009451: RNA modification	3.39E-04
18	GO:0009793: embryo development ending in seed dormancy	3.81E-04
19	GO:0005992: trehalose biosynthetic process	3.93E-04
20	GO:2000021: regulation of ion homeostasis	5.57E-04
21	GO:0006436: tryptophanyl-tRNA aminoacylation	5.57E-04
22	GO:0051247: positive regulation of protein metabolic process	5.57E-04
23	GO:0090548: response to nitrate starvation	5.57E-04
24	GO:0000066: mitochondrial ornithine transport	5.57E-04
25	GO:2000905: negative regulation of starch metabolic process	5.57E-04
26	GO:0034757: negative regulation of iron ion transport	5.57E-04
27	GO:0006419: alanyl-tRNA aminoacylation	5.57E-04
28	GO:0009090: homoserine biosynthetic process	5.57E-04
29	GO:0051382: kinetochore assembly	5.57E-04
30	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	5.57E-04
31	GO:0000012: single strand break repair	5.57E-04
32	GO:0043266: regulation of potassium ion transport	5.57E-04
33	GO:1902025: nitrate import	5.57E-04
34	GO:0010080: regulation of floral meristem growth	5.57E-04
35	GO:0006551: leucine metabolic process	5.57E-04
36	GO:0048564: photosystem I assembly	7.52E-04
37	GO:0016117: carotenoid biosynthetic process	7.89E-04
38	GO:0009657: plastid organization	9.15E-04
39	GO:0032544: plastid translation	9.15E-04
40	GO:0001682: tRNA 5'-leader removal	1.20E-03
41	GO:0031297: replication fork processing	1.20E-03
42	GO:0060359: response to ammonium ion	1.20E-03
43	GO:0048255: mRNA stabilization	1.20E-03
44	GO:0010271: regulation of chlorophyll catabolic process	1.20E-03
45	GO:0006435: threonyl-tRNA aminoacylation	1.20E-03
46	GO:1900865: chloroplast RNA modification	1.29E-03
47	GO:0043157: response to cation stress	1.97E-03
48	GO:0071398: cellular response to fatty acid	1.97E-03
49	GO:0030029: actin filament-based process	1.97E-03
50	GO:0080117: secondary growth	1.97E-03
51	GO:0048586: regulation of long-day photoperiodism, flowering	1.97E-03
52	GO:0010022: meristem determinacy	1.97E-03
53	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.97E-03
54	GO:0010623: programmed cell death involved in cell development	1.97E-03
55	GO:0051604: protein maturation	1.97E-03
56	GO:0006696: ergosterol biosynthetic process	1.97E-03
57	GO:0010029: regulation of seed germination	2.14E-03
58	GO:0010207: photosystem II assembly	2.56E-03
59	GO:0046836: glycolipid transport	2.86E-03
60	GO:0009067: aspartate family amino acid biosynthetic process	2.86E-03
61	GO:0051513: regulation of monopolar cell growth	2.86E-03
62	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.86E-03
63	GO:0051639: actin filament network formation	2.86E-03
64	GO:0034059: response to anoxia	2.86E-03
65	GO:0044211: CTP salvage	2.86E-03
66	GO:0009800: cinnamic acid biosynthetic process	2.86E-03
67	GO:0042989: sequestering of actin monomers	2.86E-03
68	GO:2000904: regulation of starch metabolic process	2.86E-03
69	GO:1990019: protein storage vacuole organization	2.86E-03
70	GO:0009658: chloroplast organization	3.10E-03
71	GO:0051781: positive regulation of cell division	3.85E-03
72	GO:0051764: actin crosslink formation	3.85E-03
73	GO:0048442: sepal development	3.85E-03
74	GO:0051322: anaphase	3.85E-03
75	GO:2000306: positive regulation of photomorphogenesis	3.85E-03
76	GO:0010508: positive regulation of autophagy	3.85E-03
77	GO:0008295: spermidine biosynthetic process	3.85E-03
78	GO:0044206: UMP salvage	3.85E-03
79	GO:0031365: N-terminal protein amino acid modification	4.94E-03
80	GO:0010158: abaxial cell fate specification	4.94E-03
81	GO:0032876: negative regulation of DNA endoreduplication	4.94E-03
82	GO:0080110: sporopollenin biosynthetic process	4.94E-03
83	GO:0016131: brassinosteroid metabolic process	4.94E-03
84	GO:0030041: actin filament polymerization	4.94E-03
85	GO:0009696: salicylic acid metabolic process	4.94E-03
86	GO:0045038: protein import into chloroplast thylakoid membrane	4.94E-03
87	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.12E-03
88	GO:0009959: negative gravitropism	6.12E-03
89	GO:0016554: cytidine to uridine editing	6.12E-03
90	GO:0048831: regulation of shoot system development	6.12E-03
91	GO:0010190: cytochrome b6f complex assembly	6.12E-03
92	GO:0003006: developmental process involved in reproduction	6.12E-03
93	GO:0006559: L-phenylalanine catabolic process	6.12E-03
94	GO:0006206: pyrimidine nucleobase metabolic process	6.12E-03
95	GO:0010087: phloem or xylem histogenesis	6.61E-03
96	GO:0008033: tRNA processing	6.61E-03
97	GO:0010268: brassinosteroid homeostasis	7.13E-03
98	GO:0045489: pectin biosynthetic process	7.13E-03
99	GO:0009088: threonine biosynthetic process	7.40E-03
100	GO:0009648: photoperiodism	7.40E-03
101	GO:0042372: phylloquinone biosynthetic process	7.40E-03
102	GO:0010076: maintenance of floral meristem identity	7.40E-03
103	GO:0009082: branched-chain amino acid biosynthetic process	7.40E-03
104	GO:0048509: regulation of meristem development	7.40E-03
105	GO:1901259: chloroplast rRNA processing	7.40E-03
106	GO:0009099: valine biosynthetic process	7.40E-03
107	GO:0000712: resolution of meiotic recombination intermediates	8.76E-03
108	GO:0006955: immune response	8.76E-03
109	GO:0010050: vegetative phase change	8.76E-03
110	GO:0010098: suspensor development	8.76E-03
111	GO:0006400: tRNA modification	8.76E-03
112	GO:0051510: regulation of unidimensional cell growth	8.76E-03
113	GO:0000302: response to reactive oxygen species	8.82E-03
114	GO:0006281: DNA repair	8.96E-03
115	GO:0007264: small GTPase mediated signal transduction	9.43E-03
116	GO:0048316: seed development	9.97E-03
117	GO:0009850: auxin metabolic process	1.02E-02
118	GO:0006353: DNA-templated transcription, termination	1.02E-02
119	GO:0070413: trehalose metabolism in response to stress	1.02E-02
120	GO:0032875: regulation of DNA endoreduplication	1.02E-02
121	GO:0007129: synapsis	1.17E-02
122	GO:0071482: cellular response to light stimulus	1.17E-02
123	GO:0009827: plant-type cell wall modification	1.17E-02
124	GO:0009097: isoleucine biosynthetic process	1.17E-02
125	GO:0010027: thylakoid membrane organization	1.28E-02
126	GO:0006098: pentose-phosphate shunt	1.33E-02
127	GO:0010206: photosystem II repair	1.33E-02
128	GO:0048507: meristem development	1.33E-02
129	GO:0016573: histone acetylation	1.50E-02
130	GO:0010018: far-red light signaling pathway	1.50E-02
131	GO:0009086: methionine biosynthetic process	1.50E-02
132	GO:0016571: histone methylation	1.50E-02
133	GO:0006259: DNA metabolic process	1.68E-02
134	GO:0009299: mRNA transcription	1.68E-02
135	GO:0006535: cysteine biosynthetic process from serine	1.68E-02
136	GO:0048441: petal development	1.68E-02
137	GO:0000160: phosphorelay signal transduction system	1.76E-02
138	GO:0009845: seed germination	1.79E-02
139	GO:0006265: DNA topological change	1.86E-02
140	GO:0009089: lysine biosynthetic process via diaminopimelate	1.86E-02
141	GO:0006415: translational termination	1.86E-02
142	GO:0009725: response to hormone	2.24E-02
143	GO:0006094: gluconeogenesis	2.24E-02
144	GO:0009691: cytokinin biosynthetic process	2.24E-02
145	GO:0040008: regulation of growth	2.29E-02
146	GO:0009416: response to light stimulus	2.41E-02
147	GO:0006839: mitochondrial transport	2.43E-02
148	GO:0009266: response to temperature stimulus	2.44E-02
149	GO:0006302: double-strand break repair	2.44E-02
150	GO:0048467: gynoecium development	2.44E-02
151	GO:0048440: carpel development	2.44E-02
152	GO:0006541: glutamine metabolic process	2.44E-02
153	GO:0010020: chloroplast fission	2.44E-02
154	GO:0006631: fatty acid metabolic process	2.54E-02
155	GO:0090351: seedling development	2.65E-02
156	GO:0008283: cell proliferation	2.75E-02
157	GO:0006863: purine nucleobase transport	2.86E-02
158	GO:0042753: positive regulation of circadian rhythm	2.86E-02
159	GO:0042546: cell wall biogenesis	2.86E-02
160	GO:0007166: cell surface receptor signaling pathway	2.87E-02
161	GO:0019344: cysteine biosynthetic process	3.08E-02
162	GO:0030150: protein import into mitochondrial matrix	3.08E-02
163	GO:0006338: chromatin remodeling	3.08E-02
164	GO:0007010: cytoskeleton organization	3.08E-02
165	GO:0051017: actin filament bundle assembly	3.08E-02
166	GO:0006289: nucleotide-excision repair	3.08E-02
167	GO:0006397: mRNA processing	3.09E-02
168	GO:0009636: response to toxic substance	3.09E-02
169	GO:0008299: isoprenoid biosynthetic process	3.31E-02
170	GO:0006418: tRNA aminoacylation for protein translation	3.31E-02
171	GO:0010431: seed maturation	3.54E-02
172	GO:0016998: cell wall macromolecule catabolic process	3.54E-02
173	GO:0006364: rRNA processing	3.70E-02
174	GO:0009736: cytokinin-activated signaling pathway	3.70E-02
175	GO:0035428: hexose transmembrane transport	3.78E-02
176	GO:0009693: ethylene biosynthetic process	4.02E-02
177	GO:0071215: cellular response to abscisic acid stimulus	4.02E-02
178	GO:0010089: xylem development	4.26E-02
179	GO:0010584: pollen exine formation	4.26E-02
180	GO:0048443: stamen development	4.26E-02
181	GO:0006284: base-excision repair	4.26E-02
182	GO:0019722: calcium-mediated signaling	4.26E-02
183	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.51E-02
184	GO:0070417: cellular response to cold	4.51E-02
185	GO:0006970: response to osmotic stress	4.57E-02
186	GO:0034220: ion transmembrane transport	4.77E-02
187	GO:0009740: gibberellic acid mediated signaling pathway	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
5	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
6	GO:0050613: delta14-sterol reductase activity	0.00E+00
7	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
8	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
9	GO:0046905: phytoene synthase activity	0.00E+00
10	GO:0003723: RNA binding	8.85E-05
11	GO:0001872: (1->3)-beta-D-glucan binding	9.62E-05
12	GO:0004805: trehalose-phosphatase activity	1.15E-04
13	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	5.57E-04
14	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	5.57E-04
15	GO:0005227: calcium activated cation channel activity	5.57E-04
16	GO:0016776: phosphotransferase activity, phosphate group as acceptor	5.57E-04
17	GO:0042834: peptidoglycan binding	5.57E-04
18	GO:0080042: ADP-glucose pyrophosphohydrolase activity	5.57E-04
19	GO:0004813: alanine-tRNA ligase activity	5.57E-04
20	GO:0005290: L-histidine transmembrane transporter activity	5.57E-04
21	GO:0003984: acetolactate synthase activity	5.57E-04
22	GO:0008395: steroid hydroxylase activity	5.57E-04
23	GO:0052381: tRNA dimethylallyltransferase activity	5.57E-04
24	GO:0051996: squalene synthase activity	5.57E-04
25	GO:0008242: omega peptidase activity	5.57E-04
26	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.57E-04
27	GO:0004830: tryptophan-tRNA ligase activity	5.57E-04
28	GO:0043022: ribosome binding	7.52E-04
29	GO:0010291: carotene beta-ring hydroxylase activity	1.20E-03
30	GO:0017118: lipoyltransferase activity	1.20E-03
31	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.20E-03
32	GO:0043425: bHLH transcription factor binding	1.20E-03
33	GO:0004766: spermidine synthase activity	1.20E-03
34	GO:0008805: carbon-monoxide oxygenase activity	1.20E-03
35	GO:0004829: threonine-tRNA ligase activity	1.20E-03
36	GO:0000064: L-ornithine transmembrane transporter activity	1.20E-03
37	GO:0004412: homoserine dehydrogenase activity	1.20E-03
38	GO:0034722: gamma-glutamyl-peptidase activity	1.20E-03
39	GO:0050736: O-malonyltransferase activity	1.20E-03
40	GO:0009884: cytokinin receptor activity	1.20E-03
41	GO:0048531: beta-1,3-galactosyltransferase activity	1.20E-03
42	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	1.20E-03
43	GO:0050017: L-3-cyanoalanine synthase activity	1.20E-03
44	GO:0003690: double-stranded DNA binding	1.60E-03
45	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.64E-03
46	GO:0016597: amino acid binding	1.85E-03
47	GO:0005034: osmosensor activity	1.97E-03
48	GO:0070402: NADPH binding	1.97E-03
49	GO:0045548: phenylalanine ammonia-lyase activity	1.97E-03
50	GO:0003913: DNA photolyase activity	1.97E-03
51	GO:0004148: dihydrolipoyl dehydrogenase activity	1.97E-03
52	GO:0009982: pseudouridine synthase activity	2.27E-03
53	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.56E-03
54	GO:0080031: methyl salicylate esterase activity	2.86E-03
55	GO:0004300: enoyl-CoA hydratase activity	2.86E-03
56	GO:0015189: L-lysine transmembrane transporter activity	2.86E-03
57	GO:0017089: glycolipid transporter activity	2.86E-03
58	GO:0004072: aspartate kinase activity	2.86E-03
59	GO:0004792: thiosulfate sulfurtransferase activity	2.86E-03
60	GO:0016149: translation release factor activity, codon specific	2.86E-03
61	GO:0015181: arginine transmembrane transporter activity	2.86E-03
62	GO:0017172: cysteine dioxygenase activity	2.86E-03
63	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.86E-03
64	GO:0004519: endonuclease activity	3.12E-03
65	GO:0031418: L-ascorbic acid binding	3.56E-03
66	GO:0004845: uracil phosphoribosyltransferase activity	3.85E-03
67	GO:0051861: glycolipid binding	3.85E-03
68	GO:0070628: proteasome binding	3.85E-03
69	GO:0052793: pectin acetylesterase activity	3.85E-03
70	GO:0042277: peptide binding	3.85E-03
71	GO:0005471: ATP:ADP antiporter activity	4.94E-03
72	GO:0008725: DNA-3-methyladenine glycosylase activity	4.94E-03
73	GO:0003785: actin monomer binding	4.94E-03
74	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.42E-03
75	GO:0043621: protein self-association	5.83E-03
76	GO:0080030: methyl indole-3-acetate esterase activity	6.12E-03
77	GO:0004332: fructose-bisphosphate aldolase activity	6.12E-03
78	GO:0004526: ribonuclease P activity	6.12E-03
79	GO:0004709: MAP kinase kinase kinase activity	6.12E-03
80	GO:0031593: polyubiquitin binding	6.12E-03
81	GO:0004130: cytochrome-c peroxidase activity	6.12E-03
82	GO:0004462: lactoylglutathione lyase activity	6.12E-03
83	GO:0016688: L-ascorbate peroxidase activity	6.12E-03
84	GO:0019900: kinase binding	7.40E-03
85	GO:0004124: cysteine synthase activity	7.40E-03
86	GO:0004849: uridine kinase activity	7.40E-03
87	GO:0004656: procollagen-proline 4-dioxygenase activity	7.40E-03
88	GO:0005525: GTP binding	7.85E-03
89	GO:0008235: metalloexopeptidase activity	8.76E-03
90	GO:0009881: photoreceptor activity	8.76E-03
91	GO:0003924: GTPase activity	8.96E-03
92	GO:0004518: nuclease activity	9.43E-03
93	GO:0016787: hydrolase activity	1.14E-02
94	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.17E-02
95	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.33E-02
96	GO:0003747: translation release factor activity	1.33E-02
97	GO:0030247: polysaccharide binding	1.51E-02
98	GO:0008236: serine-type peptidase activity	1.59E-02
99	GO:0019843: rRNA binding	1.62E-02
100	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.67E-02
101	GO:0004673: protein histidine kinase activity	1.68E-02
102	GO:0004222: metalloendopeptidase activity	1.85E-02
103	GO:0004177: aminopeptidase activity	1.86E-02
104	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.86E-02
105	GO:0000049: tRNA binding	2.05E-02
106	GO:0000155: phosphorelay sensor kinase activity	2.24E-02
107	GO:0008081: phosphoric diester hydrolase activity	2.24E-02
108	GO:0015266: protein channel activity	2.24E-02
109	GO:0008266: poly(U) RNA binding	2.44E-02
110	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.86E-02
111	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.86E-02
112	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.86E-02
113	GO:0043130: ubiquitin binding	3.08E-02
114	GO:0005528: FK506 binding	3.08E-02
115	GO:0042802: identical protein binding	3.28E-02
116	GO:0051087: chaperone binding	3.31E-02
117	GO:0043424: protein histidine kinase binding	3.31E-02
118	GO:0005345: purine nucleobase transmembrane transporter activity	3.31E-02
119	GO:0004812: aminoacyl-tRNA ligase activity	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0009507: chloroplast	2.73E-17
5	GO:0009570: chloroplast stroma	2.72E-06
6	GO:0071821: FANCM-MHF complex	5.57E-04
7	GO:0043240: Fanconi anaemia nuclear complex	5.57E-04
8	GO:0009501: amyloplast	7.52E-04
9	GO:0080085: signal recognition particle, chloroplast targeting	1.20E-03
10	GO:0009513: etioplast	1.20E-03
11	GO:0009509: chromoplast	1.97E-03
12	GO:0030529: intracellular ribonucleoprotein complex	2.00E-03
13	GO:0046658: anchored component of plasma membrane	2.35E-03
14	GO:0032432: actin filament bundle	2.86E-03
15	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	3.85E-03
16	GO:0009526: plastid envelope	3.85E-03
17	GO:0031969: chloroplast membrane	4.53E-03
18	GO:0031977: thylakoid lumen	4.74E-03
19	GO:0055035: plastid thylakoid membrane	4.94E-03
20	GO:0009535: chloroplast thylakoid membrane	5.36E-03
21	GO:0042807: central vacuole	8.76E-03
22	GO:0031305: integral component of mitochondrial inner membrane	1.02E-02
23	GO:0009295: nucleoid	1.14E-02
24	GO:0009579: thylakoid	1.16E-02
25	GO:0000326: protein storage vacuole	1.17E-02
26	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.17E-02
27	GO:0005680: anaphase-promoting complex	1.33E-02
28	GO:0016604: nuclear body	1.50E-02
29	GO:0009543: chloroplast thylakoid lumen	1.62E-02
30	GO:0005884: actin filament	1.86E-02
31	GO:0009536: plastid	1.88E-02
32	GO:0000311: plastid large ribosomal subunit	2.05E-02
33	GO:0005578: proteinaceous extracellular matrix	2.24E-02
34	GO:0009508: plastid chromosome	2.24E-02
35	GO:0009574: preprophase band	2.24E-02
36	GO:0005938: cell cortex	2.24E-02
37	GO:0030095: chloroplast photosystem II	2.44E-02
38	GO:0030176: integral component of endoplasmic reticulum membrane	2.65E-02
39	GO:0009654: photosystem II oxygen evolving complex	3.31E-02
40	GO:0042651: thylakoid membrane	3.31E-02
41	GO:0009532: plastid stroma	3.54E-02
42	GO:0015629: actin cytoskeleton	4.02E-02
43	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.26E-02
44	GO:0009505: plant-type cell wall	4.73E-02