co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G25682

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902009: positive regulation of toxin transport	0.00E+00
2	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
3	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
4	GO:0005993: trehalose catabolic process	0.00E+00
5	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
6	GO:0016559: peroxisome fission	1.40E-04
7	GO:0000077: DNA damage checkpoint	1.80E-04
8	GO:1990641: response to iron ion starvation	1.80E-04
9	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.80E-04
10	GO:0010112: regulation of systemic acquired resistance	2.13E-04
11	GO:0000266: mitochondrial fission	4.00E-04
12	GO:0045037: protein import into chloroplast stroma	4.00E-04
13	GO:0006101: citrate metabolic process	4.05E-04
14	GO:0080183: response to photooxidative stress	4.05E-04
15	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	4.05E-04
16	GO:0040020: regulation of meiotic nuclear division	4.05E-04
17	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	4.05E-04
18	GO:0006065: UDP-glucuronate biosynthetic process	6.61E-04
19	GO:0052546: cell wall pectin metabolic process	6.61E-04
20	GO:0080163: regulation of protein serine/threonine phosphatase activity	6.61E-04
21	GO:0030150: protein import into mitochondrial matrix	7.06E-04
22	GO:0071323: cellular response to chitin	9.45E-04
23	GO:0055070: copper ion homeostasis	9.45E-04
24	GO:0055089: fatty acid homeostasis	9.45E-04
25	GO:0051639: actin filament network formation	9.45E-04
26	GO:0051764: actin crosslink formation	1.25E-03
27	GO:0006623: protein targeting to vacuole	1.57E-03
28	GO:0006097: glyoxylate cycle	1.59E-03
29	GO:0009229: thiamine diphosphate biosynthetic process	1.59E-03
30	GO:0015031: protein transport	1.91E-03
31	GO:1900425: negative regulation of defense response to bacterium	1.96E-03
32	GO:0006354: DNA-templated transcription, elongation	1.96E-03
33	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	1.96E-03
34	GO:0009228: thiamine biosynthetic process	1.96E-03
35	GO:0010044: response to aluminum ion	2.77E-03
36	GO:2000014: regulation of endosperm development	2.77E-03
37	GO:0045010: actin nucleation	3.21E-03
38	GO:0031540: regulation of anthocyanin biosynthetic process	3.21E-03
39	GO:0006102: isocitrate metabolic process	3.21E-03
40	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.21E-03
41	GO:0006379: mRNA cleavage	4.15E-03
42	GO:0000902: cell morphogenesis	4.15E-03
43	GO:0007338: single fertilization	4.15E-03
44	GO:0010332: response to gamma radiation	4.15E-03
45	GO:0008202: steroid metabolic process	4.65E-03
46	GO:0009086: methionine biosynthetic process	4.65E-03
47	GO:0009688: abscisic acid biosynthetic process	5.18E-03
48	GO:0016441: posttranscriptional gene silencing	5.18E-03
49	GO:0009738: abscisic acid-activated signaling pathway	5.24E-03
50	GO:0019684: photosynthesis, light reaction	5.72E-03
51	GO:0009846: pollen germination	6.43E-03
52	GO:0030036: actin cytoskeleton organization	6.86E-03
53	GO:0018107: peptidyl-threonine phosphorylation	6.86E-03
54	GO:2000012: regulation of auxin polar transport	6.86E-03
55	GO:0007015: actin filament organization	7.46E-03
56	GO:0002237: response to molecule of bacterial origin	7.46E-03
57	GO:0070588: calcium ion transmembrane transport	8.08E-03
58	GO:0006636: unsaturated fatty acid biosynthetic process	8.71E-03
59	GO:0000162: tryptophan biosynthetic process	8.71E-03
60	GO:0080147: root hair cell development	9.37E-03
61	GO:0051017: actin filament bundle assembly	9.37E-03
62	GO:0006289: nucleotide-excision repair	9.37E-03
63	GO:0006334: nucleosome assembly	1.07E-02
64	GO:0009269: response to desiccation	1.07E-02
65	GO:0007005: mitochondrion organization	1.14E-02
66	GO:0031348: negative regulation of defense response	1.14E-02
67	GO:0071456: cellular response to hypoxia	1.14E-02
68	GO:0009411: response to UV	1.22E-02
69	GO:0010118: stomatal movement	1.44E-02
70	GO:0010182: sugar mediated signaling pathway	1.52E-02
71	GO:0009960: endosperm development	1.52E-02
72	GO:0071554: cell wall organization or biogenesis	1.77E-02
73	GO:0030163: protein catabolic process	1.94E-02
74	GO:0006470: protein dephosphorylation	1.95E-02
75	GO:0007166: cell surface receptor signaling pathway	1.95E-02
76	GO:0009567: double fertilization forming a zygote and endosperm	2.03E-02
77	GO:0008380: RNA splicing	2.04E-02
78	GO:0071805: potassium ion transmembrane transport	2.11E-02
79	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.39E-02
80	GO:0009816: defense response to bacterium, incompatible interaction	2.39E-02
81	GO:0006906: vesicle fusion	2.48E-02
82	GO:0006888: ER to Golgi vesicle-mediated transport	2.58E-02
83	GO:0048767: root hair elongation	2.87E-02
84	GO:0000724: double-strand break repair via homologous recombination	3.18E-02
85	GO:0045087: innate immune response	3.28E-02
86	GO:0006099: tricarboxylic acid cycle	3.39E-02
87	GO:0016192: vesicle-mediated transport	3.44E-02
88	GO:0006887: exocytosis	3.71E-02
89	GO:0006897: endocytosis	3.71E-02
90	GO:0006631: fatty acid metabolic process	3.71E-02
91	GO:0010114: response to red light	3.93E-02
92	GO:0051707: response to other organism	3.93E-02
93	GO:0000209: protein polyubiquitination	4.04E-02
94	GO:0007275: multicellular organism development	4.33E-02
95	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.50E-02
96	GO:0009408: response to heat	4.81E-02
97	GO:0006813: potassium ion transport	4.86E-02
98	GO:0010224: response to UV-B	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
2	GO:0102867: molybdenum cofactor sulfurtransferase activity	0.00E+00
3	GO:0050334: thiaminase activity	0.00E+00
4	GO:0034338: short-chain carboxylesterase activity	0.00E+00
5	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
6	GO:0047150: betaine-homocysteine S-methyltransferase activity	1.80E-04
7	GO:0009000: selenocysteine lyase activity	1.80E-04
8	GO:0015927: trehalase activity	1.80E-04
9	GO:0003994: aconitate hydratase activity	4.05E-04
10	GO:0000774: adenyl-nucleotide exchange factor activity	4.05E-04
11	GO:0032934: sterol binding	4.05E-04
12	GO:0003979: UDP-glucose 6-dehydrogenase activity	6.61E-04
13	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	6.61E-04
14	GO:0004324: ferredoxin-NADP+ reductase activity	6.61E-04
15	GO:0035529: NADH pyrophosphatase activity	9.45E-04
16	GO:0004834: tryptophan synthase activity	1.25E-03
17	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.59E-03
18	GO:0004623: phospholipase A2 activity	1.59E-03
19	GO:0047631: ADP-ribose diphosphatase activity	1.59E-03
20	GO:0030151: molybdenum ion binding	1.59E-03
21	GO:0000210: NAD+ diphosphatase activity	1.96E-03
22	GO:0004656: procollagen-proline 4-dioxygenase activity	2.35E-03
23	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.21E-03
24	GO:0008142: oxysterol binding	3.67E-03
25	GO:0030234: enzyme regulator activity	5.18E-03
26	GO:0004864: protein phosphatase inhibitor activity	5.18E-03
27	GO:0051287: NAD binding	6.20E-03
28	GO:0004022: alcohol dehydrogenase (NAD) activity	6.86E-03
29	GO:0005388: calcium-transporting ATPase activity	6.86E-03
30	GO:0008061: chitin binding	8.08E-03
31	GO:0003712: transcription cofactor activity	8.08E-03
32	GO:0042803: protein homodimerization activity	8.84E-03
33	GO:0031418: L-ascorbic acid binding	9.37E-03
34	GO:0015079: potassium ion transmembrane transporter activity	1.00E-02
35	GO:0051087: chaperone binding	1.00E-02
36	GO:0046872: metal ion binding	1.15E-02
37	GO:0030170: pyridoxal phosphate binding	1.37E-02
38	GO:0005102: receptor binding	1.37E-02
39	GO:0005509: calcium ion binding	1.42E-02
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.59E-02
41	GO:0050662: coenzyme binding	1.60E-02
42	GO:0051015: actin filament binding	1.94E-02
43	GO:0016413: O-acetyltransferase activity	2.20E-02
44	GO:0004806: triglyceride lipase activity	2.58E-02
45	GO:0030247: polysaccharide binding	2.58E-02
46	GO:0003682: chromatin binding	2.79E-02
47	GO:0004222: metalloendopeptidase activity	2.97E-02
48	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.28E-02
49	GO:0005507: copper ion binding	3.49E-02
50	GO:0000149: SNARE binding	3.50E-02
51	GO:0051539: 4 iron, 4 sulfur cluster binding	3.60E-02
52	GO:0005484: SNAP receptor activity	3.93E-02
53	GO:0051537: 2 iron, 2 sulfur cluster binding	4.16E-02
54	GO:0004722: protein serine/threonine phosphatase activity	4.29E-02
55	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0001405: presequence translocase-associated import motor	1.80E-04
2	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.61E-04
3	GO:0005741: mitochondrial outer membrane	8.51E-04
4	GO:0032432: actin filament bundle	9.45E-04
5	GO:0030658: transport vesicle membrane	9.45E-04
6	GO:0000813: ESCRT I complex	1.59E-03
7	GO:0000164: protein phosphatase type 1 complex	1.59E-03
8	GO:0005778: peroxisomal membrane	2.16E-03
9	GO:0005885: Arp2/3 protein complex	2.35E-03
10	GO:0030665: clathrin-coated vesicle membrane	4.65E-03
11	GO:0008540: proteasome regulatory particle, base subcomplex	4.65E-03
12	GO:0031902: late endosome membrane	4.72E-03
13	GO:0016021: integral component of membrane	4.95E-03
14	GO:0017119: Golgi transport complex	5.18E-03
15	GO:0005884: actin filament	5.72E-03
16	GO:0005789: endoplasmic reticulum membrane	9.33E-03
17	GO:0009543: chloroplast thylakoid lumen	1.23E-02
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.29E-02
19	GO:0005783: endoplasmic reticulum	2.08E-02
20	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.90E-02
21	GO:0000325: plant-type vacuole	3.08E-02
22	GO:0031201: SNARE complex	3.71E-02
23	GO:0005743: mitochondrial inner membrane	4.48E-02
24	GO:0005829: cytosol	4.64E-02
25	GO:0000502: proteasome complex	4.86E-02