co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G25580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080149: sucrose induced translational repression	0.00E+00
2	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
3	GO:0010407: non-classical arabinogalactan protein metabolic process	0.00E+00
4	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
5	GO:0005993: trehalose catabolic process	0.00E+00
6	GO:0030968: endoplasmic reticulum unfolded protein response	1.02E-04
7	GO:0031567: mitotic cell size control checkpoint	1.25E-04
8	GO:1903648: positive regulation of chlorophyll catabolic process	1.25E-04
9	GO:0042350: GDP-L-fucose biosynthetic process	1.25E-04
10	GO:1990641: response to iron ion starvation	1.25E-04
11	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.25E-04
12	GO:0006101: citrate metabolic process	2.90E-04
13	GO:0042853: L-alanine catabolic process	2.90E-04
14	GO:0009846: pollen germination	4.60E-04
15	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	4.78E-04
16	GO:0006065: UDP-glucuronate biosynthetic process	4.78E-04
17	GO:0006517: protein deglycosylation	4.78E-04
18	GO:0052546: cell wall pectin metabolic process	4.78E-04
19	GO:0009226: nucleotide-sugar biosynthetic process	6.85E-04
20	GO:0050482: arachidonic acid secretion	6.85E-04
21	GO:0055070: copper ion homeostasis	6.85E-04
22	GO:0055089: fatty acid homeostasis	6.85E-04
23	GO:0051639: actin filament network formation	6.85E-04
24	GO:0072334: UDP-galactose transmembrane transport	6.85E-04
25	GO:0051764: actin crosslink formation	9.08E-04
26	GO:0006097: glyoxylate cycle	1.15E-03
27	GO:0030163: protein catabolic process	1.18E-03
28	GO:0006139: nucleobase-containing compound metabolic process	1.41E-03
29	GO:0043248: proteasome assembly	1.41E-03
30	GO:0017148: negative regulation of translation	1.68E-03
31	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.68E-03
32	GO:2000014: regulation of endosperm development	1.98E-03
33	GO:1900057: positive regulation of leaf senescence	1.98E-03
34	GO:0006333: chromatin assembly or disassembly	1.98E-03
35	GO:0030307: positive regulation of cell growth	1.98E-03
36	GO:0010044: response to aluminum ion	1.98E-03
37	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.29E-03
38	GO:0006491: N-glycan processing	2.29E-03
39	GO:1900150: regulation of defense response to fungus	2.29E-03
40	GO:0045010: actin nucleation	2.29E-03
41	GO:0006102: isocitrate metabolic process	2.29E-03
42	GO:0006644: phospholipid metabolic process	2.29E-03
43	GO:0000724: double-strand break repair via homologous recombination	2.32E-03
44	GO:0000902: cell morphogenesis	2.95E-03
45	GO:0000209: protein polyubiquitination	3.25E-03
46	GO:0090332: stomatal closure	3.31E-03
47	GO:0009086: methionine biosynthetic process	3.31E-03
48	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.77E-03
49	GO:0006457: protein folding	3.80E-03
50	GO:0000266: mitochondrial fission	4.45E-03
51	GO:0008361: regulation of cell size	4.45E-03
52	GO:0030036: actin cytoskeleton organization	4.86E-03
53	GO:0007034: vacuolar transport	5.28E-03
54	GO:0007015: actin filament organization	5.28E-03
55	GO:0034605: cellular response to heat	5.28E-03
56	GO:0070588: calcium ion transmembrane transport	5.71E-03
57	GO:0007030: Golgi organization	5.71E-03
58	GO:0006636: unsaturated fatty acid biosynthetic process	6.15E-03
59	GO:0000162: tryptophan biosynthetic process	6.15E-03
60	GO:0030150: protein import into mitochondrial matrix	6.61E-03
61	GO:0051017: actin filament bundle assembly	6.61E-03
62	GO:0006289: nucleotide-excision repair	6.61E-03
63	GO:0006334: nucleosome assembly	7.56E-03
64	GO:0048278: vesicle docking	7.56E-03
65	GO:0009058: biosynthetic process	7.86E-03
66	GO:0030433: ubiquitin-dependent ERAD pathway	8.05E-03
67	GO:0009411: response to UV	8.56E-03
68	GO:0010091: trichome branching	9.07E-03
69	GO:0009306: protein secretion	9.07E-03
70	GO:0010584: pollen exine formation	9.07E-03
71	GO:0009960: endosperm development	1.07E-02
72	GO:0061025: membrane fusion	1.12E-02
73	GO:0009738: abscisic acid-activated signaling pathway	1.14E-02
74	GO:0006623: protein targeting to vacuole	1.18E-02
75	GO:0016032: viral process	1.30E-02
76	GO:0009630: gravitropism	1.30E-02
77	GO:0045893: positive regulation of transcription, DNA-templated	1.42E-02
78	GO:0046686: response to cadmium ion	1.46E-02
79	GO:0071805: potassium ion transmembrane transport	1.48E-02
80	GO:0001666: response to hypoxia	1.61E-02
81	GO:0009816: defense response to bacterium, incompatible interaction	1.67E-02
82	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.67E-02
83	GO:0009860: pollen tube growth	1.72E-02
84	GO:0006906: vesicle fusion	1.74E-02
85	GO:0048767: root hair elongation	2.01E-02
86	GO:0007275: multicellular organism development	2.07E-02
87	GO:0010119: regulation of stomatal movement	2.15E-02
88	GO:0007165: signal transduction	2.26E-02
89	GO:0006099: tricarboxylic acid cycle	2.37E-02
90	GO:0006631: fatty acid metabolic process	2.60E-02
91	GO:0010114: response to red light	2.75E-02
92	GO:0009744: response to sucrose	2.75E-02
93	GO:0051707: response to other organism	2.75E-02
94	GO:0042538: hyperosmotic salinity response	3.24E-02
95	GO:0006486: protein glycosylation	3.40E-02
96	GO:0006813: potassium ion transport	3.40E-02
97	GO:0010224: response to UV-B	3.49E-02
98	GO:0006857: oligopeptide transport	3.57E-02
99	GO:0006096: glycolytic process	3.83E-02
100	GO:0016569: covalent chromatin modification	4.19E-02
101	GO:0009553: embryo sac development	4.28E-02
102	GO:0018105: peptidyl-serine phosphorylation	4.47E-02
103	GO:0006396: RNA processing	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
2	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
3	GO:0034338: short-chain carboxylesterase activity	0.00E+00
4	GO:0004623: phospholipase A2 activity	2.18E-05
5	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	1.25E-04
6	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.25E-04
7	GO:0047150: betaine-homocysteine S-methyltransferase activity	1.25E-04
8	GO:0050577: GDP-L-fucose synthase activity	1.25E-04
9	GO:0015927: trehalase activity	1.25E-04
10	GO:1990381: ubiquitin-specific protease binding	1.25E-04
11	GO:0048531: beta-1,3-galactosyltransferase activity	2.90E-04
12	GO:0003994: aconitate hydratase activity	2.90E-04
13	GO:0000774: adenyl-nucleotide exchange factor activity	2.90E-04
14	GO:0000975: regulatory region DNA binding	4.78E-04
15	GO:0003979: UDP-glucose 6-dehydrogenase activity	4.78E-04
16	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	6.85E-04
17	GO:0005460: UDP-glucose transmembrane transporter activity	6.85E-04
18	GO:0051082: unfolded protein binding	7.83E-04
19	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	9.08E-04
20	GO:0004834: tryptophan synthase activity	9.08E-04
21	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.15E-03
22	GO:0005459: UDP-galactose transmembrane transporter activity	1.15E-03
23	GO:0004656: procollagen-proline 4-dioxygenase activity	1.68E-03
24	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.29E-03
25	GO:0030955: potassium ion binding	3.31E-03
26	GO:0004743: pyruvate kinase activity	3.31E-03
27	GO:0030234: enzyme regulator activity	3.68E-03
28	GO:0015198: oligopeptide transporter activity	4.45E-03
29	GO:0008378: galactosyltransferase activity	4.45E-03
30	GO:0005388: calcium-transporting ATPase activity	4.86E-03
31	GO:0031418: L-ascorbic acid binding	6.61E-03
32	GO:0005509: calcium ion binding	6.63E-03
33	GO:0015079: potassium ion transmembrane transporter activity	7.08E-03
34	GO:0051087: chaperone binding	7.08E-03
35	GO:0030170: pyridoxal phosphate binding	8.28E-03
36	GO:0005102: receptor binding	9.60E-03
37	GO:0050662: coenzyme binding	1.12E-02
38	GO:0016853: isomerase activity	1.12E-02
39	GO:0051015: actin filament binding	1.36E-02
40	GO:0030247: polysaccharide binding	1.81E-02
41	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.81E-02
42	GO:0004806: triglyceride lipase activity	1.81E-02
43	GO:0005507: copper ion binding	1.87E-02
44	GO:0004222: metalloendopeptidase activity	2.08E-02
45	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.30E-02
46	GO:0000149: SNARE binding	2.45E-02
47	GO:0042803: protein homodimerization activity	2.49E-02
48	GO:0051539: 4 iron, 4 sulfur cluster binding	2.52E-02
49	GO:0005484: SNAP receptor activity	2.75E-02
50	GO:0035091: phosphatidylinositol binding	2.91E-02
51	GO:0005198: structural molecule activity	2.99E-02
52	GO:0043565: sequence-specific DNA binding	3.09E-02
53	GO:0051287: NAD binding	3.15E-02
54	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.10E-02
55	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.10E-02
56	GO:0022857: transmembrane transporter activity	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0044322: endoplasmic reticulum quality control compartment	1.25E-04
2	GO:0001405: presequence translocase-associated import motor	1.25E-04
3	GO:0000836: Hrd1p ubiquitin ligase complex	1.25E-04
4	GO:0036513: Derlin-1 retrotranslocation complex	6.85E-04
5	GO:0032432: actin filament bundle	6.85E-04
6	GO:0016272: prefoldin complex	1.68E-03
7	GO:0005885: Arp2/3 protein complex	1.68E-03
8	GO:0030173: integral component of Golgi membrane	1.68E-03
9	GO:0031902: late endosome membrane	2.88E-03
10	GO:0030665: clathrin-coated vesicle membrane	3.31E-03
11	GO:0008540: proteasome regulatory particle, base subcomplex	3.31E-03
12	GO:0017119: Golgi transport complex	3.68E-03
13	GO:0008541: proteasome regulatory particle, lid subcomplex	4.06E-03
14	GO:0005884: actin filament	4.06E-03
15	GO:0000502: proteasome complex	4.20E-03
16	GO:0030176: integral component of endoplasmic reticulum membrane	5.71E-03
17	GO:0000139: Golgi membrane	1.19E-02
18	GO:0005774: vacuolar membrane	1.60E-02
19	GO:0005788: endoplasmic reticulum lumen	1.67E-02
20	GO:0000325: plant-type vacuole	2.15E-02
21	GO:0031201: SNARE complex	2.60E-02
22	GO:0043231: intracellular membrane-bounded organelle	3.23E-02
23	GO:0005887: integral component of plasma membrane	3.97E-02
24	GO:0005834: heterotrimeric G-protein complex	4.01E-02
25	GO:0005829: cytosol	4.04E-02
26	GO:0005737: cytoplasm	4.20E-02
27	GO:0005789: endoplasmic reticulum membrane	4.88E-02
28	GO:0016021: integral component of membrane	4.96E-02