Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G25290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0017038: protein import0.00E+00
2GO:1902326: positive regulation of chlorophyll biosynthetic process0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
5GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
6GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
7GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
8GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
9GO:0018023: peptidyl-lysine trimethylation0.00E+00
10GO:1905157: positive regulation of photosynthesis0.00E+00
11GO:0006429: leucyl-tRNA aminoacylation0.00E+00
12GO:0000476: maturation of 4.5S rRNA0.00E+00
13GO:0000967: rRNA 5'-end processing0.00E+00
14GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
15GO:0009658: chloroplast organization1.88E-06
16GO:0015979: photosynthesis7.65E-06
17GO:0034470: ncRNA processing1.08E-05
18GO:1901259: chloroplast rRNA processing1.17E-05
19GO:0009773: photosynthetic electron transport in photosystem I1.10E-04
20GO:0006021: inositol biosynthetic process1.36E-04
21GO:0010027: thylakoid membrane organization2.19E-04
22GO:0015995: chlorophyll biosynthetic process2.87E-04
23GO:0042372: phylloquinone biosynthetic process3.95E-04
24GO:0009955: adaxial/abaxial pattern specification3.95E-04
25GO:1905039: carboxylic acid transmembrane transport4.95E-04
26GO:1905200: gibberellic acid transmembrane transport4.95E-04
27GO:0080112: seed growth4.95E-04
28GO:0005980: glycogen catabolic process4.95E-04
29GO:0030198: extracellular matrix organization4.95E-04
30GO:0010480: microsporocyte differentiation4.95E-04
31GO:0006659: phosphatidylserine biosynthetic process4.95E-04
32GO:0042371: vitamin K biosynthetic process4.95E-04
33GO:0043686: co-translational protein modification4.95E-04
34GO:0043007: maintenance of rDNA4.95E-04
35GO:1902458: positive regulation of stomatal opening4.95E-04
36GO:0034337: RNA folding4.95E-04
37GO:0005991: trehalose metabolic process4.95E-04
38GO:0000023: maltose metabolic process4.95E-04
39GO:0048437: floral organ development5.07E-04
40GO:0009772: photosynthetic electron transport in photosystem II5.07E-04
41GO:0046620: regulation of organ growth6.32E-04
42GO:0010182: sugar mediated signaling pathway7.65E-04
43GO:0009657: plastid organization7.70E-04
44GO:0032544: plastid translation7.70E-04
45GO:0007154: cell communication1.07E-03
46GO:0018026: peptidyl-lysine monomethylation1.07E-03
47GO:0071497: cellular response to freezing1.07E-03
48GO:0042325: regulation of phosphorylation1.07E-03
49GO:1904143: positive regulation of carotenoid biosynthetic process1.07E-03
50GO:1903426: regulation of reactive oxygen species biosynthetic process1.07E-03
51GO:0006568: tryptophan metabolic process1.07E-03
52GO:0009629: response to gravity1.07E-03
53GO:1901657: glycosyl compound metabolic process1.17E-03
54GO:0005983: starch catabolic process1.67E-03
55GO:0009405: pathogenesis1.74E-03
56GO:0006696: ergosterol biosynthetic process1.74E-03
57GO:0033591: response to L-ascorbic acid1.74E-03
58GO:0009416: response to light stimulus1.78E-03
59GO:0010207: photosystem II assembly2.14E-03
60GO:0010731: protein glutathionylation2.52E-03
61GO:0043572: plastid fission2.52E-03
62GO:0016556: mRNA modification2.52E-03
63GO:0090308: regulation of methylation-dependent chromatin silencing2.52E-03
64GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.52E-03
65GO:0045338: farnesyl diphosphate metabolic process2.52E-03
66GO:0006020: inositol metabolic process2.52E-03
67GO:0009102: biotin biosynthetic process2.52E-03
68GO:0009152: purine ribonucleotide biosynthetic process2.52E-03
69GO:0010601: positive regulation of auxin biosynthetic process2.52E-03
70GO:0046653: tetrahydrofolate metabolic process2.52E-03
71GO:0010239: chloroplast mRNA processing2.52E-03
72GO:0009052: pentose-phosphate shunt, non-oxidative branch2.52E-03
73GO:0005975: carbohydrate metabolic process3.00E-03
74GO:0034599: cellular response to oxidative stress3.20E-03
75GO:0006418: tRNA aminoacylation for protein translation3.28E-03
76GO:0022622: root system development3.40E-03
77GO:1901141: regulation of lignin biosynthetic process3.40E-03
78GO:0010109: regulation of photosynthesis3.40E-03
79GO:0009765: photosynthesis, light harvesting3.40E-03
80GO:0032543: mitochondrial translation4.36E-03
81GO:0006564: L-serine biosynthetic process4.36E-03
82GO:0010236: plastoquinone biosynthetic process4.36E-03
83GO:0045038: protein import into chloroplast thylakoid membrane4.36E-03
84GO:0031365: N-terminal protein amino acid modification4.36E-03
85GO:0006855: drug transmembrane transport5.09E-03
86GO:1902456: regulation of stomatal opening5.40E-03
87GO:0010190: cytochrome b6f complex assembly5.40E-03
88GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.40E-03
89GO:0009643: photosynthetic acclimation5.40E-03
90GO:0000741: karyogamy5.40E-03
91GO:0046855: inositol phosphate dephosphorylation5.40E-03
92GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.40E-03
93GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.40E-03
94GO:0080022: primary root development5.51E-03
95GO:0006662: glycerol ether metabolic process5.94E-03
96GO:0009958: positive gravitropism5.94E-03
97GO:0016042: lipid catabolic process6.20E-03
98GO:0009646: response to absence of light6.39E-03
99GO:0048280: vesicle fusion with Golgi apparatus6.52E-03
100GO:2000033: regulation of seed dormancy process6.52E-03
101GO:0030488: tRNA methylation6.52E-03
102GO:0080086: stamen filament development6.52E-03
103GO:0010444: guard mother cell differentiation7.71E-03
104GO:0032880: regulation of protein localization7.71E-03
105GO:0032502: developmental process7.86E-03
106GO:0010583: response to cyclopentenone7.86E-03
107GO:0009828: plant-type cell wall loosening8.92E-03
108GO:0006605: protein targeting8.97E-03
109GO:0010078: maintenance of root meristem identity8.97E-03
110GO:0006353: DNA-templated transcription, termination8.97E-03
111GO:0070413: trehalose metabolism in response to stress8.97E-03
112GO:2000070: regulation of response to water deprivation8.97E-03
113GO:0052543: callose deposition in cell wall8.97E-03
114GO:0007186: G-protein coupled receptor signaling pathway1.03E-02
115GO:0043562: cellular response to nitrogen levels1.03E-02
116GO:0071482: cellular response to light stimulus1.03E-02
117GO:0015996: chlorophyll catabolic process1.03E-02
118GO:0009742: brassinosteroid mediated signaling pathway1.04E-02
119GO:0009607: response to biotic stimulus1.13E-02
120GO:0046916: cellular transition metal ion homeostasis1.17E-02
121GO:0046685: response to arsenic-containing substance1.17E-02
122GO:0009821: alkaloid biosynthetic process1.17E-02
123GO:0031425: chloroplast RNA processing1.32E-02
124GO:0071577: zinc II ion transmembrane transport1.32E-02
125GO:0009638: phototropism1.32E-02
126GO:0018298: protein-chromophore linkage1.40E-02
127GO:0010162: seed dormancy process1.47E-02
128GO:0006896: Golgi to vacuole transport1.47E-02
129GO:0045036: protein targeting to chloroplast1.47E-02
130GO:0009813: flavonoid biosynthetic process1.47E-02
131GO:0048527: lateral root development1.62E-02
132GO:0072593: reactive oxygen species metabolic process1.63E-02
133GO:0015770: sucrose transport1.63E-02
134GO:0006415: translational termination1.63E-02
135GO:0048229: gametophyte development1.63E-02
136GO:0010216: maintenance of DNA methylation1.63E-02
137GO:0009684: indoleacetic acid biosynthetic process1.63E-02
138GO:0010015: root morphogenesis1.63E-02
139GO:0006508: proteolysis1.76E-02
140GO:0006413: translational initiation1.77E-02
141GO:0016024: CDP-diacylglycerol biosynthetic process1.80E-02
142GO:0045037: protein import into chloroplast stroma1.80E-02
143GO:0006790: sulfur compound metabolic process1.80E-02
144GO:0010588: cotyledon vascular tissue pattern formation1.97E-02
145GO:2000012: regulation of auxin polar transport1.97E-02
146GO:0010628: positive regulation of gene expression1.97E-02
147GO:0010102: lateral root morphogenesis1.97E-02
148GO:0050826: response to freezing1.97E-02
149GO:0009718: anthocyanin-containing compound biosynthetic process1.97E-02
150GO:0010075: regulation of meristem growth1.97E-02
151GO:0009451: RNA modification1.99E-02
152GO:0010143: cutin biosynthetic process2.14E-02
153GO:0010020: chloroplast fission2.14E-02
154GO:0009266: response to temperature stimulus2.14E-02
155GO:0009934: regulation of meristem structural organization2.14E-02
156GO:0048467: gynoecium development2.14E-02
157GO:0019853: L-ascorbic acid biosynthetic process2.33E-02
158GO:0009901: anther dehiscence2.33E-02
159GO:0010030: positive regulation of seed germination2.33E-02
160GO:0046854: phosphatidylinositol phosphorylation2.33E-02
161GO:0006071: glycerol metabolic process2.51E-02
162GO:0005992: trehalose biosynthetic process2.71E-02
163GO:0009664: plant-type cell wall organization2.88E-02
164GO:0009768: photosynthesis, light harvesting in photosystem I2.90E-02
165GO:0019953: sexual reproduction2.90E-02
166GO:0019915: lipid storage3.11E-02
167GO:0061077: chaperone-mediated protein folding3.11E-02
168GO:0006730: one-carbon metabolic process3.31E-02
169GO:0031348: negative regulation of defense response3.31E-02
170GO:0019748: secondary metabolic process3.31E-02
171GO:0030245: cellulose catabolic process3.31E-02
172GO:0016226: iron-sulfur cluster assembly3.31E-02
173GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.53E-02
174GO:0009686: gibberellin biosynthetic process3.53E-02
175GO:0006012: galactose metabolic process3.53E-02
176GO:0009306: protein secretion3.74E-02
177GO:0048367: shoot system development3.77E-02
178GO:0007165: signal transduction3.81E-02
179GO:0008284: positive regulation of cell proliferation3.96E-02
180GO:0042147: retrograde transport, endosome to Golgi3.96E-02
181GO:0016117: carotenoid biosynthetic process3.96E-02
182GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.96E-02
183GO:0048366: leaf development4.08E-02
184GO:0010087: phloem or xylem histogenesis4.19E-02
185GO:0048653: anther development4.19E-02
186GO:0042631: cellular response to water deprivation4.19E-02
187GO:0080167: response to karrikin4.35E-02
188GO:0010197: polar nucleus fusion4.42E-02
189GO:0009741: response to brassinosteroid4.42E-02
190GO:0010268: brassinosteroid homeostasis4.42E-02
191GO:0009735: response to cytokinin4.49E-02
192GO:0006396: RNA processing4.52E-02
193GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.53E-02
194GO:0015986: ATP synthesis coupled proton transport4.65E-02
195GO:0055114: oxidation-reduction process4.67E-02
196GO:0009793: embryo development ending in seed dormancy4.68E-02
197GO:0006623: protein targeting to vacuole4.88E-02
198GO:0048825: cotyledon development4.88E-02
199GO:0009791: post-embryonic development4.88E-02
200GO:0019252: starch biosynthetic process4.88E-02
201GO:0008654: phospholipid biosynthetic process4.88E-02
202GO:0009556: microsporogenesis4.88E-02
203GO:0009851: auxin biosynthetic process4.88E-02
RankGO TermAdjusted P value
1GO:0005363: maltose transmembrane transporter activity0.00E+00
2GO:0090711: FMN hydrolase activity0.00E+00
3GO:0010303: limit dextrinase activity0.00E+00
4GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0004823: leucine-tRNA ligase activity0.00E+00
7GO:0051060: pullulanase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0005201: extracellular matrix structural constituent0.00E+00
11GO:0004076: biotin synthase activity0.00E+00
12GO:0010349: L-galactose dehydrogenase activity0.00E+00
13GO:0002161: aminoacyl-tRNA editing activity3.66E-05
14GO:0016851: magnesium chelatase activity7.86E-05
15GO:0019843: rRNA binding1.02E-04
16GO:0045430: chalcone isomerase activity1.36E-04
17GO:0043495: protein anchor1.36E-04
18GO:0005528: FK506 binding3.10E-04
19GO:0004645: phosphorylase activity4.95E-04
20GO:0005080: protein kinase C binding4.95E-04
21GO:0042586: peptide deformylase activity4.95E-04
22GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.95E-04
23GO:0050139: nicotinate-N-glucosyltransferase activity4.95E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity4.95E-04
25GO:1905201: gibberellin transmembrane transporter activity4.95E-04
26GO:0051777: ent-kaurenoate oxidase activity4.95E-04
27GO:0008184: glycogen phosphorylase activity4.95E-04
28GO:0004856: xylulokinase activity4.95E-04
29GO:0019899: enzyme binding5.07E-04
30GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.07E-03
31GO:0016630: protochlorophyllide reductase activity1.07E-03
32GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.07E-03
33GO:0008934: inositol monophosphate 1-phosphatase activity1.07E-03
34GO:0052833: inositol monophosphate 4-phosphatase activity1.07E-03
35GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.07E-03
36GO:0004512: inositol-3-phosphate synthase activity1.07E-03
37GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.07E-03
38GO:0004617: phosphoglycerate dehydrogenase activity1.07E-03
39GO:0052832: inositol monophosphate 3-phosphatase activity1.07E-03
40GO:0016168: chlorophyll binding1.70E-03
41GO:0005504: fatty acid binding1.74E-03
42GO:0090729: toxin activity1.74E-03
43GO:0003913: DNA photolyase activity1.74E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity1.74E-03
45GO:0004751: ribose-5-phosphate isomerase activity1.74E-03
46GO:0045174: glutathione dehydrogenase (ascorbate) activity1.74E-03
47GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.74E-03
48GO:0008864: formyltetrahydrofolate deformylase activity1.74E-03
49GO:0015462: ATPase-coupled protein transmembrane transporter activity1.74E-03
50GO:0031072: heat shock protein binding1.90E-03
51GO:0102483: scopolin beta-glucosidase activity1.96E-03
52GO:0015238: drug transmembrane transporter activity2.38E-03
53GO:0016149: translation release factor activity, codon specific2.52E-03
54GO:0022890: inorganic cation transmembrane transporter activity2.52E-03
55GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.52E-03
56GO:0008422: beta-glucosidase activity3.38E-03
57GO:0004659: prenyltransferase activity3.40E-03
58GO:0016279: protein-lysine N-methyltransferase activity3.40E-03
59GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.40E-03
60GO:0022891: substrate-specific transmembrane transporter activity4.32E-03
61GO:0003959: NADPH dehydrogenase activity4.36E-03
62GO:0016846: carbon-sulfur lyase activity4.36E-03
63GO:0016773: phosphotransferase activity, alcohol group as acceptor4.36E-03
64GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.09E-03
65GO:0047134: protein-disulfide reductase activity5.09E-03
66GO:0004812: aminoacyl-tRNA ligase activity5.09E-03
67GO:0004629: phospholipase C activity5.40E-03
68GO:0004556: alpha-amylase activity5.40E-03
69GO:0016208: AMP binding5.40E-03
70GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.40E-03
71GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.40E-03
72GO:0004791: thioredoxin-disulfide reductase activity6.39E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.52E-03
74GO:0004435: phosphatidylinositol phospholipase C activity6.52E-03
75GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.52E-03
76GO:0008195: phosphatidate phosphatase activity6.52E-03
77GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor8.38E-03
78GO:0016791: phosphatase activity8.92E-03
79GO:0004525: ribonuclease III activity8.97E-03
80GO:0004033: aldo-keto reductase (NADP) activity8.97E-03
81GO:0016788: hydrolase activity, acting on ester bonds9.16E-03
82GO:0008237: metallopeptidase activity9.48E-03
83GO:0016597: amino acid binding1.01E-02
84GO:0046914: transition metal ion binding1.03E-02
85GO:0008173: RNA methyltransferase activity1.03E-02
86GO:0008889: glycerophosphodiester phosphodiesterase activity1.17E-02
87GO:0071949: FAD binding1.17E-02
88GO:0003747: translation release factor activity1.17E-02
89GO:0016844: strictosidine synthase activity1.32E-02
90GO:0052689: carboxylic ester hydrolase activity1.44E-02
91GO:0003735: structural constituent of ribosome1.47E-02
92GO:0015020: glucuronosyltransferase activity1.47E-02
93GO:0004222: metalloendopeptidase activity1.54E-02
94GO:0008515: sucrose transmembrane transporter activity1.63E-02
95GO:0015386: potassium:proton antiporter activity1.63E-02
96GO:0008559: xenobiotic-transporting ATPase activity1.63E-02
97GO:0004871: signal transducer activity1.74E-02
98GO:0000049: tRNA binding1.80E-02
99GO:0015297: antiporter activity1.82E-02
100GO:0004022: alcohol dehydrogenase (NAD) activity1.97E-02
101GO:0004089: carbonate dehydratase activity1.97E-02
102GO:0019888: protein phosphatase regulator activity1.97E-02
103GO:0003725: double-stranded RNA binding1.97E-02
104GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.14E-02
105GO:0008266: poly(U) RNA binding2.14E-02
106GO:0008083: growth factor activity2.14E-02
107GO:0003723: RNA binding2.20E-02
108GO:0004185: serine-type carboxypeptidase activity2.29E-02
109GO:0051119: sugar transmembrane transporter activity2.33E-02
110GO:0003743: translation initiation factor activity2.35E-02
111GO:0035091: phosphatidylinositol binding2.48E-02
112GO:0004519: endonuclease activity2.51E-02
113GO:0031409: pigment binding2.51E-02
114GO:0042802: identical protein binding2.61E-02
115GO:0051536: iron-sulfur cluster binding2.71E-02
116GO:0005385: zinc ion transmembrane transporter activity2.71E-02
117GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.82E-02
118GO:0015079: potassium ion transmembrane transporter activity2.90E-02
119GO:0008324: cation transmembrane transporter activity2.90E-02
120GO:0004176: ATP-dependent peptidase activity3.11E-02
121GO:0033612: receptor serine/threonine kinase binding3.11E-02
122GO:0008810: cellulase activity3.53E-02
123GO:0005525: GTP binding4.06E-02
124GO:0051082: unfolded protein binding4.39E-02
125GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.42E-02
126GO:0003713: transcription coactivator activity4.42E-02
127GO:0015035: protein disulfide oxidoreductase activity4.52E-02
128GO:0015299: solute:proton antiporter activity4.65E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast1.11E-32
3GO:0009570: chloroplast stroma1.97E-19
4GO:0009535: chloroplast thylakoid membrane1.34E-15
5GO:0009534: chloroplast thylakoid3.00E-08
6GO:0009941: chloroplast envelope3.93E-08
7GO:0031969: chloroplast membrane3.46E-05
8GO:0010007: magnesium chelatase complex3.66E-05
9GO:0009579: thylakoid5.85E-05
10GO:0009543: chloroplast thylakoid lumen1.02E-04
11GO:0009547: plastid ribosome4.95E-04
12GO:0031977: thylakoid lumen6.48E-04
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.21E-04
14GO:0033281: TAT protein transport complex1.74E-03
15GO:0009528: plastid inner membrane1.74E-03
16GO:0042651: thylakoid membrane3.28E-03
17GO:0005840: ribosome3.30E-03
18GO:0009527: plastid outer membrane3.40E-03
19GO:0009532: plastid stroma3.61E-03
20GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)5.40E-03
21GO:0009840: chloroplastic endopeptidase Clp complex6.52E-03
22GO:0009523: photosystem II6.86E-03
23GO:0043231: intracellular membrane-bounded organelle7.74E-03
24GO:0012507: ER to Golgi transport vesicle membrane8.97E-03
25GO:0010319: stromule9.48E-03
26GO:0009706: chloroplast inner membrane9.62E-03
27GO:0005720: nuclear heterochromatin1.17E-02
28GO:0005763: mitochondrial small ribosomal subunit1.17E-02
29GO:0009707: chloroplast outer membrane1.40E-02
30GO:0000159: protein phosphatase type 2A complex1.63E-02
31GO:0000311: plastid large ribosomal subunit1.80E-02
32GO:0032040: small-subunit processome1.80E-02
33GO:0031902: late endosome membrane2.11E-02
34GO:0016021: integral component of membrane2.32E-02
35GO:0030076: light-harvesting complex2.33E-02
36GO:0046658: anchored component of plasma membrane2.75E-02
37GO:0009654: photosystem II oxygen evolving complex2.90E-02
38GO:0015935: small ribosomal subunit3.11E-02
39GO:0016020: membrane3.23E-02
40GO:0009536: plastid3.27E-02
41GO:0005770: late endosome4.42E-02
42GO:0019898: extrinsic component of membrane4.88E-02
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Gene type



Gene DE type