co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G23750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
6	GO:0070125: mitochondrial translational elongation	0.00E+00
7	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
8	GO:0019323: pentose catabolic process	0.00E+00
9	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
10	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
11	GO:0015995: chlorophyll biosynthetic process	1.68E-06
12	GO:0018026: peptidyl-lysine monomethylation	2.51E-06
13	GO:0009658: chloroplast organization	3.77E-06
14	GO:0042793: transcription from plastid promoter	8.88E-05
15	GO:0048437: floral organ development	1.62E-04
16	GO:0005980: glycogen catabolic process	2.32E-04
17	GO:0070509: calcium ion import	2.32E-04
18	GO:0044262: cellular carbohydrate metabolic process	2.32E-04
19	GO:1904966: positive regulation of vitamin E biosynthetic process	2.32E-04
20	GO:0010063: positive regulation of trichoblast fate specification	2.32E-04
21	GO:0010480: microsporocyte differentiation	2.32E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	2.32E-04
23	GO:0042759: long-chain fatty acid biosynthetic process	2.32E-04
24	GO:0043686: co-translational protein modification	2.32E-04
25	GO:0043007: maintenance of rDNA	2.32E-04
26	GO:1902458: positive regulation of stomatal opening	2.32E-04
27	GO:0010027: thylakoid membrane organization	3.89E-04
28	GO:0009793: embryo development ending in seed dormancy	4.64E-04
29	GO:0009786: regulation of asymmetric cell division	5.15E-04
30	GO:0001682: tRNA 5'-leader removal	5.15E-04
31	GO:0008616: queuosine biosynthetic process	5.15E-04
32	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.15E-04
33	GO:0006568: tryptophan metabolic process	5.15E-04
34	GO:2000123: positive regulation of stomatal complex development	5.15E-04
35	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.15E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.15E-04
37	GO:0010020: chloroplast fission	7.26E-04
38	GO:0070588: calcium ion transmembrane transport	8.11E-04
39	GO:0009640: photomorphogenesis	1.01E-03
40	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.19E-03
41	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.19E-03
42	GO:0009647: skotomorphogenesis	1.19E-03
43	GO:0016556: mRNA modification	1.19E-03
44	GO:0046739: transport of virus in multicellular host	1.19E-03
45	GO:0043572: plastid fission	1.19E-03
46	GO:0010071: root meristem specification	1.19E-03
47	GO:0007231: osmosensory signaling pathway	1.19E-03
48	GO:0009102: biotin biosynthetic process	1.19E-03
49	GO:0033500: carbohydrate homeostasis	1.59E-03
50	GO:2000038: regulation of stomatal complex development	1.59E-03
51	GO:0010109: regulation of photosynthesis	1.59E-03
52	GO:0010305: leaf vascular tissue pattern formation	1.95E-03
53	GO:0000304: response to singlet oxygen	2.03E-03
54	GO:0032543: mitochondrial translation	2.03E-03
55	GO:0045038: protein import into chloroplast thylakoid membrane	2.03E-03
56	GO:0031365: N-terminal protein amino acid modification	2.03E-03
57	GO:0009107: lipoate biosynthetic process	2.03E-03
58	GO:0016123: xanthophyll biosynthetic process	2.03E-03
59	GO:0010375: stomatal complex patterning	2.03E-03
60	GO:0009742: brassinosteroid mediated signaling pathway	2.47E-03
61	GO:0032973: amino acid export	2.50E-03
62	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.50E-03
63	GO:0000741: karyogamy	2.50E-03
64	GO:0010405: arabinogalactan protein metabolic process	2.50E-03
65	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.50E-03
66	GO:0016554: cytidine to uridine editing	2.50E-03
67	GO:0015979: photosynthesis	2.71E-03
68	GO:0042372: phylloquinone biosynthetic process	3.00E-03
69	GO:0017148: negative regulation of translation	3.00E-03
70	GO:0048280: vesicle fusion with Golgi apparatus	3.00E-03
71	GO:0030488: tRNA methylation	3.00E-03
72	GO:0010444: guard mother cell differentiation	3.54E-03
73	GO:0048528: post-embryonic root development	3.54E-03
74	GO:0043090: amino acid import	3.54E-03
75	GO:0006605: protein targeting	4.10E-03
76	GO:2000070: regulation of response to water deprivation	4.10E-03
77	GO:0000105: histidine biosynthetic process	4.10E-03
78	GO:0009231: riboflavin biosynthetic process	4.10E-03
79	GO:0007155: cell adhesion	4.10E-03
80	GO:0010497: plasmodesmata-mediated intercellular transport	4.70E-03
81	GO:0009657: plastid organization	4.70E-03
82	GO:0015996: chlorophyll catabolic process	4.70E-03
83	GO:0007186: G-protein coupled receptor signaling pathway	4.70E-03
84	GO:0048507: meristem development	5.32E-03
85	GO:0080144: amino acid homeostasis	5.32E-03
86	GO:0046916: cellular transition metal ion homeostasis	5.32E-03
87	GO:0000902: cell morphogenesis	5.32E-03
88	GO:0007166: cell surface receptor signaling pathway	5.45E-03
89	GO:0009638: phototropism	5.97E-03
90	GO:0006779: porphyrin-containing compound biosynthetic process	5.97E-03
91	GO:1900865: chloroplast RNA modification	5.97E-03
92	GO:0006782: protoporphyrinogen IX biosynthetic process	6.65E-03
93	GO:0048829: root cap development	6.65E-03
94	GO:0045036: protein targeting to chloroplast	6.65E-03
95	GO:0009641: shade avoidance	6.65E-03
96	GO:0006896: Golgi to vacuole transport	6.65E-03
97	GO:0006631: fatty acid metabolic process	6.78E-03
98	GO:0019684: photosynthesis, light reaction	7.35E-03
99	GO:0006415: translational termination	7.35E-03
100	GO:0009073: aromatic amino acid family biosynthetic process	7.35E-03
101	GO:0048229: gametophyte development	7.35E-03
102	GO:0006816: calcium ion transport	7.35E-03
103	GO:0009773: photosynthetic electron transport in photosystem I	7.35E-03
104	GO:0005983: starch catabolic process	8.08E-03
105	GO:0045037: protein import into chloroplast stroma	8.08E-03
106	GO:0050826: response to freezing	8.84E-03
107	GO:0009718: anthocyanin-containing compound biosynthetic process	8.84E-03
108	GO:0010075: regulation of meristem growth	8.84E-03
109	GO:0009416: response to light stimulus	9.58E-03
110	GO:0010207: photosystem II assembly	9.62E-03
111	GO:0009266: response to temperature stimulus	9.62E-03
112	GO:0009934: regulation of meristem structural organization	9.62E-03
113	GO:0048366: leaf development	9.86E-03
114	GO:0010030: positive regulation of seed germination	1.04E-02
115	GO:0010025: wax biosynthetic process	1.13E-02
116	GO:0000162: tryptophan biosynthetic process	1.13E-02
117	GO:0006418: tRNA aminoacylation for protein translation	1.30E-02
118	GO:0031408: oxylipin biosynthetic process	1.39E-02
119	GO:0048511: rhythmic process	1.39E-02
120	GO:0006396: RNA processing	1.46E-02
121	GO:0030245: cellulose catabolic process	1.48E-02
122	GO:0009294: DNA mediated transformation	1.57E-02
123	GO:0042127: regulation of cell proliferation	1.67E-02
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.77E-02
125	GO:0042147: retrograde transport, endosome to Golgi	1.77E-02
126	GO:0008033: tRNA processing	1.87E-02
127	GO:0000413: protein peptidyl-prolyl isomerization	1.87E-02
128	GO:0009058: biosynthetic process	1.87E-02
129	GO:0048653: anther development	1.87E-02
130	GO:0042631: cellular response to water deprivation	1.87E-02
131	GO:0006662: glycerol ether metabolic process	1.97E-02
132	GO:0010197: polar nucleus fusion	1.97E-02
133	GO:0010182: sugar mediated signaling pathway	1.97E-02
134	GO:0048544: recognition of pollen	2.07E-02
135	GO:0042752: regulation of circadian rhythm	2.07E-02
136	GO:0009646: response to absence of light	2.07E-02
137	GO:0009790: embryo development	2.08E-02
138	GO:0006623: protein targeting to vacuole	2.18E-02
139	GO:0006891: intra-Golgi vesicle-mediated transport	2.29E-02
140	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.29E-02
141	GO:0040008: regulation of growth	2.34E-02
142	GO:0010583: response to cyclopentenone	2.40E-02
143	GO:0016032: viral process	2.40E-02
144	GO:0032502: developmental process	2.40E-02
145	GO:0010090: trichome morphogenesis	2.51E-02
146	GO:0009451: RNA modification	2.51E-02
147	GO:0007267: cell-cell signaling	2.74E-02
148	GO:0009627: systemic acquired resistance	3.22E-02
149	GO:0006888: ER to Golgi vesicle-mediated transport	3.34E-02
150	GO:0009555: pollen development	3.54E-02
151	GO:0048481: plant ovule development	3.59E-02
152	GO:0018298: protein-chromophore linkage	3.59E-02
153	GO:0010311: lateral root formation	3.72E-02
154	GO:0009813: flavonoid biosynthetic process	3.72E-02
155	GO:0009910: negative regulation of flower development	3.98E-02
156	GO:0045087: innate immune response	4.25E-02
157	GO:0016051: carbohydrate biosynthetic process	4.25E-02
158	GO:0034599: cellular response to oxidative stress	4.39E-02
159	GO:0006839: mitochondrial transport	4.67E-02
160	GO:0030001: metal ion transport	4.67E-02
161	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0004823: leucine-tRNA ligase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0016279: protein-lysine N-methyltransferase activity	3.78E-05
8	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	2.32E-04
9	GO:0042586: peptide deformylase activity	2.32E-04
10	GO:0004856: xylulokinase activity	2.32E-04
11	GO:0004645: phosphorylase activity	2.32E-04
12	GO:0019203: carbohydrate phosphatase activity	2.32E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.32E-04
14	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.32E-04
15	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.32E-04
16	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.32E-04
17	GO:0008184: glycogen phosphorylase activity	2.32E-04
18	GO:0050308: sugar-phosphatase activity	2.32E-04
19	GO:0030385: ferredoxin:thioredoxin reductase activity	5.15E-04
20	GO:0016630: protochlorophyllide reductase activity	5.15E-04
21	GO:0004750: ribulose-phosphate 3-epimerase activity	5.15E-04
22	GO:0008479: queuine tRNA-ribosyltransferase activity	5.15E-04
23	GO:0031072: heat shock protein binding	6.45E-04
24	GO:0005262: calcium channel activity	6.45E-04
25	GO:0002161: aminoacyl-tRNA editing activity	8.37E-04
26	GO:0005504: fatty acid binding	8.37E-04
27	GO:0016805: dipeptidase activity	8.37E-04
28	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.37E-04
29	GO:0004180: carboxypeptidase activity	8.37E-04
30	GO:0070330: aromatase activity	8.37E-04
31	GO:0016992: lipoate synthase activity	8.37E-04
32	GO:0003913: DNA photolyase activity	8.37E-04
33	GO:0016851: magnesium chelatase activity	1.19E-03
34	GO:0016149: translation release factor activity, codon specific	1.19E-03
35	GO:0043023: ribosomal large subunit binding	1.19E-03
36	GO:0004176: ATP-dependent peptidase activity	1.20E-03
37	GO:0019199: transmembrane receptor protein kinase activity	1.59E-03
38	GO:0043495: protein anchor	1.59E-03
39	GO:0045430: chalcone isomerase activity	1.59E-03
40	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.03E-03
41	GO:0018685: alkane 1-monooxygenase activity	2.03E-03
42	GO:0016208: AMP binding	2.50E-03
43	GO:2001070: starch binding	2.50E-03
44	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.50E-03
45	GO:0004526: ribonuclease P activity	2.50E-03
46	GO:0051753: mannan synthase activity	3.00E-03
47	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.00E-03
48	GO:0008237: metallopeptidase activity	3.08E-03
49	GO:0019899: enzyme binding	3.54E-03
50	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.20E-03
51	GO:0046914: transition metal ion binding	4.70E-03
52	GO:0008173: RNA methyltransferase activity	4.70E-03
53	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.32E-03
54	GO:0003747: translation release factor activity	5.32E-03
55	GO:0042802: identical protein binding	6.23E-03
56	GO:0051539: 4 iron, 4 sulfur cluster binding	6.50E-03
57	GO:0015020: glucuronosyltransferase activity	6.65E-03
58	GO:0035091: phosphatidylinositol binding	7.96E-03
59	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.59E-03
60	GO:0008266: poly(U) RNA binding	9.62E-03
61	GO:0008146: sulfotransferase activity	1.04E-02
62	GO:0005528: FK506 binding	1.21E-02
63	GO:0043424: protein histidine kinase binding	1.30E-02
64	GO:0033612: receptor serine/threonine kinase binding	1.39E-02
65	GO:0046983: protein dimerization activity	1.39E-02
66	GO:0051082: unfolded protein binding	1.42E-02
67	GO:0008810: cellulase activity	1.57E-02
68	GO:0022891: substrate-specific transmembrane transporter activity	1.57E-02
69	GO:0003756: protein disulfide isomerase activity	1.67E-02
70	GO:0003924: GTPase activity	1.73E-02
71	GO:0047134: protein-disulfide reductase activity	1.77E-02
72	GO:0004812: aminoacyl-tRNA ligase activity	1.77E-02
73	GO:0004519: endonuclease activity	1.92E-02
74	GO:0030170: pyridoxal phosphate binding	1.97E-02
75	GO:0004791: thioredoxin-disulfide reductase activity	2.07E-02
76	GO:0019901: protein kinase binding	2.18E-02
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.51E-02
78	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.74E-02
79	GO:0005200: structural constituent of cytoskeleton	2.74E-02
80	GO:0008483: transaminase activity	2.74E-02
81	GO:0016597: amino acid binding	2.86E-02
82	GO:0016168: chlorophyll binding	3.10E-02
83	GO:0008375: acetylglucosaminyltransferase activity	3.22E-02
84	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.59E-02
85	GO:0015238: drug transmembrane transporter activity	3.72E-02
86	GO:0000287: magnesium ion binding	3.72E-02
87	GO:0004222: metalloendopeptidase activity	3.85E-02
88	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.25E-02
89	GO:0003746: translation elongation factor activity	4.25E-02
90	GO:0000149: SNARE binding	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.84E-24
2	GO:0009570: chloroplast stroma	3.47E-14
3	GO:0009941: chloroplast envelope	6.95E-11
4	GO:0009534: chloroplast thylakoid	5.27E-07
5	GO:0009508: plastid chromosome	6.04E-07
6	GO:0009295: nucleoid	2.21E-05
7	GO:0009535: chloroplast thylakoid membrane	4.24E-04
8	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.15E-04
9	GO:0030139: endocytic vesicle	8.37E-04
10	GO:0009528: plastid inner membrane	8.37E-04
11	GO:0010007: magnesium chelatase complex	8.37E-04
12	GO:0042651: thylakoid membrane	1.09E-03
13	GO:0032585: multivesicular body membrane	1.19E-03
14	GO:0009532: plastid stroma	1.20E-03
15	GO:0009527: plastid outer membrane	1.59E-03
16	GO:0031969: chloroplast membrane	2.22E-03
17	GO:0009706: chloroplast inner membrane	2.29E-03
18	GO:0010319: stromule	3.08E-03
19	GO:0009986: cell surface	3.54E-03
20	GO:0009533: chloroplast stromal thylakoid	3.54E-03
21	GO:0009536: plastid	3.68E-03
22	GO:0012507: ER to Golgi transport vesicle membrane	4.10E-03
23	GO:0009707: chloroplast outer membrane	4.50E-03
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.32E-03
25	GO:0043234: protein complex	1.13E-02
26	GO:0015629: actin cytoskeleton	1.57E-02
27	GO:0009543: chloroplast thylakoid lumen	1.78E-02
28	GO:0009523: photosystem II	2.18E-02
29	GO:0005778: peroxisomal membrane	2.74E-02
30	GO:0030529: intracellular ribonucleoprotein complex	2.98E-02
31	GO:0031902: late endosome membrane	4.81E-02
32	GO:0031977: thylakoid lumen	4.81E-02
33	GO:0031201: SNARE complex	4.81E-02