co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G23740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
4	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
5	GO:0009661: chromoplast organization	0.00E+00
6	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	2.59E-07
9	GO:0010207: photosystem II assembly	6.63E-07
10	GO:0090391: granum assembly	8.14E-06
11	GO:0006021: inositol biosynthetic process	3.41E-05
12	GO:0016120: carotene biosynthetic process	5.47E-05
13	GO:0015979: photosynthesis	7.92E-05
14	GO:0042549: photosystem II stabilization	8.04E-05
15	GO:0010114: response to red light	1.01E-04
16	GO:0010196: nonphotochemical quenching	1.47E-04
17	GO:0050821: protein stabilization	1.88E-04
18	GO:0005980: glycogen catabolic process	2.18E-04
19	GO:0071277: cellular response to calcium ion	2.18E-04
20	GO:0046467: membrane lipid biosynthetic process	2.18E-04
21	GO:0015671: oxygen transport	2.18E-04
22	GO:0080093: regulation of photorespiration	2.18E-04
23	GO:0031998: regulation of fatty acid beta-oxidation	2.18E-04
24	GO:0006835: dicarboxylic acid transport	2.18E-04
25	GO:0000023: maltose metabolic process	2.18E-04
26	GO:0000025: maltose catabolic process	2.18E-04
27	GO:0006098: pentose-phosphate shunt	2.82E-04
28	GO:0080029: cellular response to boron-containing substance levels	4.86E-04
29	GO:0006898: receptor-mediated endocytosis	4.86E-04
30	GO:0071457: cellular response to ozone	4.86E-04
31	GO:0005976: polysaccharide metabolic process	4.86E-04
32	GO:1904143: positive regulation of carotenoid biosynthetic process	4.86E-04
33	GO:0006094: gluconeogenesis	5.92E-04
34	GO:0010143: cutin biosynthetic process	6.66E-04
35	GO:0006518: peptide metabolic process	7.90E-04
36	GO:0055114: oxidation-reduction process	8.23E-04
37	GO:0006636: unsaturated fatty acid biosynthetic process	8.29E-04
38	GO:0009768: photosynthesis, light harvesting in photosystem I	1.01E-03
39	GO:0046713: borate transport	1.13E-03
40	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.13E-03
41	GO:1902358: sulfate transmembrane transport	1.13E-03
42	GO:0006020: inositol metabolic process	1.13E-03
43	GO:0071484: cellular response to light intensity	1.13E-03
44	GO:0045727: positive regulation of translation	1.50E-03
45	GO:0015994: chlorophyll metabolic process	1.50E-03
46	GO:0071483: cellular response to blue light	1.50E-03
47	GO:0071486: cellular response to high light intensity	1.50E-03
48	GO:0009765: photosynthesis, light harvesting	1.50E-03
49	GO:0006096: glycolytic process	1.62E-03
50	GO:0071493: cellular response to UV-B	1.91E-03
51	GO:0009904: chloroplast accumulation movement	1.91E-03
52	GO:0006097: glyoxylate cycle	1.91E-03
53	GO:0019252: starch biosynthetic process	2.06E-03
54	GO:1902456: regulation of stomatal opening	2.35E-03
55	GO:0046855: inositol phosphate dephosphorylation	2.35E-03
56	GO:0010190: cytochrome b6f complex assembly	2.35E-03
57	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.35E-03
58	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.35E-03
59	GO:0009903: chloroplast avoidance movement	2.83E-03
60	GO:0010189: vitamin E biosynthetic process	2.83E-03
61	GO:0071333: cellular response to glucose stimulus	2.83E-03
62	GO:0008272: sulfate transport	3.33E-03
63	GO:0009769: photosynthesis, light harvesting in photosystem II	3.33E-03
64	GO:1900057: positive regulation of leaf senescence	3.33E-03
65	GO:0009645: response to low light intensity stimulus	3.33E-03
66	GO:0015995: chlorophyll biosynthetic process	3.72E-03
67	GO:0019827: stem cell population maintenance	3.86E-03
68	GO:0009642: response to light intensity	3.86E-03
69	GO:0070413: trehalose metabolism in response to stress	3.86E-03
70	GO:0009704: de-etiolation	3.86E-03
71	GO:0018298: protein-chromophore linkage	4.12E-03
72	GO:0006810: transport	4.40E-03
73	GO:0009657: plastid organization	4.42E-03
74	GO:0019430: removal of superoxide radicals	4.42E-03
75	GO:0032544: plastid translation	4.42E-03
76	GO:0015996: chlorophyll catabolic process	4.42E-03
77	GO:0010218: response to far red light	4.55E-03
78	GO:0005975: carbohydrate metabolic process	4.69E-03
79	GO:0019432: triglyceride biosynthetic process	5.00E-03
80	GO:0009821: alkaloid biosynthetic process	5.00E-03
81	GO:0010206: photosystem II repair	5.00E-03
82	GO:0090333: regulation of stomatal closure	5.00E-03
83	GO:0009637: response to blue light	5.22E-03
84	GO:0034599: cellular response to oxidative stress	5.46E-03
85	GO:0005982: starch metabolic process	5.62E-03
86	GO:0006631: fatty acid metabolic process	6.20E-03
87	GO:0006535: cysteine biosynthetic process from serine	6.25E-03
88	GO:0009641: shade avoidance	6.25E-03
89	GO:0043085: positive regulation of catalytic activity	6.91E-03
90	GO:0000272: polysaccharide catabolic process	6.91E-03
91	GO:0018119: peptidyl-cysteine S-nitrosylation	6.91E-03
92	GO:0009644: response to high light intensity	7.28E-03
93	GO:0005983: starch catabolic process	7.60E-03
94	GO:0006790: sulfur compound metabolic process	7.60E-03
95	GO:0006108: malate metabolic process	8.30E-03
96	GO:0006006: glucose metabolic process	8.30E-03
97	GO:0009725: response to hormone	8.30E-03
98	GO:0019253: reductive pentose-phosphate cycle	9.03E-03
99	GO:0007015: actin filament organization	9.03E-03
100	GO:0010223: secondary shoot formation	9.03E-03
101	GO:0009266: response to temperature stimulus	9.03E-03
102	GO:0006364: rRNA processing	9.08E-03
103	GO:0080167: response to karrikin	9.40E-03
104	GO:0046854: phosphatidylinositol phosphorylation	9.79E-03
105	GO:0010025: wax biosynthetic process	1.06E-02
106	GO:0005992: trehalose biosynthetic process	1.14E-02
107	GO:0019344: cysteine biosynthetic process	1.14E-02
108	GO:0045454: cell redox homeostasis	1.18E-02
109	GO:0009269: response to desiccation	1.30E-02
110	GO:0016998: cell wall macromolecule catabolic process	1.30E-02
111	GO:0035428: hexose transmembrane transport	1.39E-02
112	GO:0030433: ubiquitin-dependent ERAD pathway	1.39E-02
113	GO:0019748: secondary metabolic process	1.39E-02
114	GO:0032259: methylation	1.46E-02
115	GO:0071215: cellular response to abscisic acid stimulus	1.48E-02
116	GO:0016117: carotenoid biosynthetic process	1.66E-02
117	GO:0000413: protein peptidyl-prolyl isomerization	1.75E-02
118	GO:0042631: cellular response to water deprivation	1.75E-02
119	GO:0071472: cellular response to salt stress	1.85E-02
120	GO:0006520: cellular amino acid metabolic process	1.85E-02
121	GO:0006662: glycerol ether metabolic process	1.85E-02
122	GO:0046323: glucose import	1.85E-02
123	GO:0009741: response to brassinosteroid	1.85E-02
124	GO:0006633: fatty acid biosynthetic process	2.04E-02
125	GO:0008654: phospholipid biosynthetic process	2.05E-02
126	GO:0032502: developmental process	2.25E-02
127	GO:0009630: gravitropism	2.25E-02
128	GO:1901657: glycosyl compound metabolic process	2.36E-02
129	GO:0051607: defense response to virus	2.68E-02
130	GO:0010027: thylakoid membrane organization	2.79E-02
131	GO:0009735: response to cytokinin	2.84E-02
132	GO:0009733: response to auxin	2.86E-02
133	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.91E-02
134	GO:0042128: nitrate assimilation	3.02E-02
135	GO:0010411: xyloglucan metabolic process	3.14E-02
136	GO:0016311: dephosphorylation	3.25E-02
137	GO:0010311: lateral root formation	3.49E-02
138	GO:0000160: phosphorelay signal transduction system	3.49E-02
139	GO:0009813: flavonoid biosynthetic process	3.49E-02
140	GO:0006099: tricarboxylic acid cycle	4.12E-02
141	GO:0006457: protein folding	4.35E-02
142	GO:0006839: mitochondrial transport	4.38E-02
143	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.44E-02
144	GO:0042542: response to hydrogen peroxide	4.65E-02
145	GO:0009744: response to sucrose	4.78E-02
146	GO:0051707: response to other organism	4.78E-02
147	GO:0000209: protein polyubiquitination	4.91E-02
148	GO:0042546: cell wall biogenesis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0016166: phytoene dehydrogenase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
4	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
7	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
8	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
9	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
10	GO:0030794: (S)-coclaurine-N-methyltransferase activity	0.00E+00
11	GO:0009011: starch synthase activity	1.84E-07
12	GO:0010297: heteropolysaccharide binding	2.23E-06
13	GO:0004373: glycogen (starch) synthase activity	8.14E-06
14	GO:0004332: fructose-bisphosphate aldolase activity	8.04E-05
15	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.18E-04
16	GO:0004134: 4-alpha-glucanotransferase activity	2.18E-04
17	GO:0004645: phosphorylase activity	2.18E-04
18	GO:0031957: very long-chain fatty acid-CoA ligase activity	2.18E-04
19	GO:0034256: chlorophyll(ide) b reductase activity	2.18E-04
20	GO:0015168: glycerol transmembrane transporter activity	2.18E-04
21	GO:0045486: naringenin 3-dioxygenase activity	2.18E-04
22	GO:0005344: oxygen transporter activity	2.18E-04
23	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.18E-04
24	GO:0008184: glycogen phosphorylase activity	2.18E-04
25	GO:0008934: inositol monophosphate 1-phosphatase activity	4.86E-04
26	GO:0052833: inositol monophosphate 4-phosphatase activity	4.86E-04
27	GO:0004512: inositol-3-phosphate synthase activity	4.86E-04
28	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.86E-04
29	GO:0019172: glyoxalase III activity	4.86E-04
30	GO:0050017: L-3-cyanoalanine synthase activity	4.86E-04
31	GO:0047746: chlorophyllase activity	4.86E-04
32	GO:0042389: omega-3 fatty acid desaturase activity	4.86E-04
33	GO:0052832: inositol monophosphate 3-phosphatase activity	4.86E-04
34	GO:0033201: alpha-1,4-glucan synthase activity	4.86E-04
35	GO:0004565: beta-galactosidase activity	5.92E-04
36	GO:0005310: dicarboxylic acid transmembrane transporter activity	7.90E-04
37	GO:0050734: hydroxycinnamoyltransferase activity	7.90E-04
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.90E-04
39	GO:0031409: pigment binding	8.29E-04
40	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.13E-03
41	GO:0046715: borate transmembrane transporter activity	1.13E-03
42	GO:0017077: oxidative phosphorylation uncoupler activity	1.13E-03
43	GO:0015204: urea transmembrane transporter activity	1.50E-03
44	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.50E-03
45	GO:0004784: superoxide dismutase activity	2.35E-03
46	GO:0004462: lactoylglutathione lyase activity	2.35E-03
47	GO:0016615: malate dehydrogenase activity	2.35E-03
48	GO:2001070: starch binding	2.35E-03
49	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.83E-03
50	GO:0102391: decanoate--CoA ligase activity	2.83E-03
51	GO:0030060: L-malate dehydrogenase activity	2.83E-03
52	GO:0004124: cysteine synthase activity	2.83E-03
53	GO:0004467: long-chain fatty acid-CoA ligase activity	3.33E-03
54	GO:0016168: chlorophyll binding	3.35E-03
55	GO:0005337: nucleoside transmembrane transporter activity	3.86E-03
56	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.42E-03
57	GO:0008271: secondary active sulfate transmembrane transporter activity	4.42E-03
58	GO:0042802: identical protein binding	5.56E-03
59	GO:0016844: strictosidine synthase activity	5.62E-03
60	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.62E-03
61	GO:0008047: enzyme activator activity	6.25E-03
62	GO:0008168: methyltransferase activity	6.81E-03
63	GO:0016788: hydrolase activity, acting on ester bonds	7.32E-03
64	GO:0015116: sulfate transmembrane transporter activity	7.60E-03
65	GO:0004022: alcohol dehydrogenase (NAD) activity	8.30E-03
66	GO:0031072: heat shock protein binding	8.30E-03
67	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.03E-03
68	GO:0031418: L-ascorbic acid binding	1.14E-02
69	GO:0016491: oxidoreductase activity	1.16E-02
70	GO:0015035: protein disulfide oxidoreductase activity	1.33E-02
71	GO:0022891: substrate-specific transmembrane transporter activity	1.48E-02
72	GO:0003727: single-stranded RNA binding	1.57E-02
73	GO:0047134: protein-disulfide reductase activity	1.66E-02
74	GO:0030170: pyridoxal phosphate binding	1.80E-02
75	GO:0005355: glucose transmembrane transporter activity	1.95E-02
76	GO:0050662: coenzyme binding	1.95E-02
77	GO:0015144: carbohydrate transmembrane transporter activity	1.95E-02
78	GO:0004791: thioredoxin-disulfide reductase activity	1.95E-02
79	GO:0016853: isomerase activity	1.95E-02
80	GO:0004872: receptor activity	2.05E-02
81	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.15E-02
82	GO:0048038: quinone binding	2.15E-02
83	GO:0005351: sugar:proton symporter activity	2.19E-02
84	GO:0000156: phosphorelay response regulator activity	2.36E-02
85	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.36E-02
86	GO:0016791: phosphatase activity	2.46E-02
87	GO:0016787: hydrolase activity	2.67E-02
88	GO:0015250: water channel activity	2.79E-02
89	GO:0102483: scopolin beta-glucosidase activity	3.14E-02
90	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.14E-02
91	GO:0004222: metalloendopeptidase activity	3.62E-02
92	GO:0003746: translation elongation factor activity	3.99E-02
93	GO:0016740: transferase activity	4.05E-02
94	GO:0003993: acid phosphatase activity	4.12E-02
95	GO:0008422: beta-glucosidase activity	4.25E-02
96	GO:0050661: NADP binding	4.38E-02
97	GO:0030246: carbohydrate binding	4.56E-02
98	GO:0052689: carboxylic ester hydrolase activity	4.74E-02
99	GO:0004185: serine-type carboxypeptidase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	9.10E-27
3	GO:0009534: chloroplast thylakoid	7.29E-21
4	GO:0009535: chloroplast thylakoid membrane	3.42E-15
5	GO:0009941: chloroplast envelope	3.49E-12
6	GO:0010287: plastoglobule	1.65E-07
7	GO:0009543: chloroplast thylakoid lumen	2.00E-07
8	GO:0009579: thylakoid	3.33E-07
9	GO:0031977: thylakoid lumen	5.17E-06
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.27E-06
11	GO:0031969: chloroplast membrane	5.70E-05
12	GO:0009570: chloroplast stroma	8.61E-05
13	GO:0009515: granal stacked thylakoid	2.18E-04
14	GO:0048046: apoplast	4.02E-04
15	GO:0009569: chloroplast starch grain	4.86E-04
16	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.86E-04
17	GO:0030076: light-harvesting complex	7.45E-04
18	GO:0009509: chromoplast	7.90E-04
19	GO:0042651: thylakoid membrane	1.01E-03
20	GO:0009654: photosystem II oxygen evolving complex	1.01E-03
21	GO:0009517: PSII associated light-harvesting complex II	1.50E-03
22	GO:0009522: photosystem I	1.92E-03
23	GO:0009523: photosystem II	2.06E-03
24	GO:0019898: extrinsic component of membrane	2.06E-03
25	GO:0031982: vesicle	3.86E-03
26	GO:0009501: amyloplast	3.86E-03
27	GO:0008180: COP9 signalosome	5.00E-03
28	GO:0005773: vacuole	8.29E-03
29	GO:0005623: cell	1.67E-02
30	GO:0010319: stromule	2.57E-02
31	GO:0019005: SCF ubiquitin ligase complex	3.37E-02
32	GO:0005777: peroxisome	3.76E-02