co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G23550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046680: response to DDT	0.00E+00
2	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
3	GO:0042176: regulation of protein catabolic process	1.77E-05
4	GO:0030163: protein catabolic process	3.87E-05
5	GO:0010421: hydrogen peroxide-mediated programmed cell death	8.61E-05
6	GO:0000032: cell wall mannoprotein biosynthetic process	8.61E-05
7	GO:0019478: D-amino acid catabolic process	8.61E-05
8	GO:1900384: regulation of flavonol biosynthetic process	8.61E-05
9	GO:0043609: regulation of carbon utilization	8.61E-05
10	GO:0035266: meristem growth	8.61E-05
11	GO:0007292: female gamete generation	8.61E-05
12	GO:0051788: response to misfolded protein	2.04E-04
13	GO:0080026: response to indolebutyric acid	2.04E-04
14	GO:0009156: ribonucleoside monophosphate biosynthetic process	2.04E-04
15	GO:0015709: thiosulfate transport	2.04E-04
16	GO:0031538: negative regulation of anthocyanin metabolic process	2.04E-04
17	GO:0071422: succinate transmembrane transport	2.04E-04
18	GO:0009805: coumarin biosynthetic process	2.04E-04
19	GO:0033591: response to L-ascorbic acid	3.42E-04
20	GO:0060968: regulation of gene silencing	3.42E-04
21	GO:0006556: S-adenosylmethionine biosynthetic process	3.42E-04
22	GO:0009062: fatty acid catabolic process	3.42E-04
23	GO:0010253: UDP-rhamnose biosynthetic process	3.42E-04
24	GO:0006517: protein deglycosylation	3.42E-04
25	GO:0006511: ubiquitin-dependent protein catabolic process	3.66E-04
26	GO:0046686: response to cadmium ion	3.73E-04
27	GO:0015729: oxaloacetate transport	4.92E-04
28	GO:0071329: cellular response to sucrose stimulus	4.92E-04
29	GO:0043967: histone H4 acetylation	4.92E-04
30	GO:0080024: indolebutyric acid metabolic process	4.92E-04
31	GO:0009298: GDP-mannose biosynthetic process	4.92E-04
32	GO:1902584: positive regulation of response to water deprivation	6.55E-04
33	GO:0009165: nucleotide biosynthetic process	6.55E-04
34	GO:0045927: positive regulation of growth	8.29E-04
35	GO:0071423: malate transmembrane transport	8.29E-04
36	GO:0098719: sodium ion import across plasma membrane	8.29E-04
37	GO:0006555: methionine metabolic process	1.01E-03
38	GO:0043248: proteasome assembly	1.01E-03
39	GO:0010315: auxin efflux	1.01E-03
40	GO:0035435: phosphate ion transmembrane transport	1.01E-03
41	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.01E-03
42	GO:0048827: phyllome development	1.01E-03
43	GO:0048232: male gamete generation	1.01E-03
44	GO:0019509: L-methionine salvage from methylthioadenosine	1.20E-03
45	GO:0034389: lipid particle organization	1.20E-03
46	GO:0043966: histone H3 acetylation	1.20E-03
47	GO:0080113: regulation of seed growth	1.20E-03
48	GO:0006499: N-terminal protein myristoylation	1.29E-03
49	GO:0010043: response to zinc ion	1.35E-03
50	GO:0006744: ubiquinone biosynthetic process	1.41E-03
51	GO:0080186: developmental vegetative growth	1.41E-03
52	GO:0008272: sulfate transport	1.41E-03
53	GO:0006368: transcription elongation from RNA polymerase II promoter	1.41E-03
54	GO:0045087: innate immune response	1.48E-03
55	GO:0010928: regulation of auxin mediated signaling pathway	1.63E-03
56	GO:0035265: organ growth	1.63E-03
57	GO:0006491: N-glycan processing	1.63E-03
58	GO:0010078: maintenance of root meristem identity	1.63E-03
59	GO:0015996: chlorophyll catabolic process	1.86E-03
60	GO:0009699: phenylpropanoid biosynthetic process	1.86E-03
61	GO:0006002: fructose 6-phosphate metabolic process	1.86E-03
62	GO:0016192: vesicle-mediated transport	1.96E-03
63	GO:2000024: regulation of leaf development	2.10E-03
64	GO:0046685: response to arsenic-containing substance	2.10E-03
65	GO:0009636: response to toxic substance	2.12E-03
66	GO:0051453: regulation of intracellular pH	2.35E-03
67	GO:0006886: intracellular protein transport	2.40E-03
68	GO:0051555: flavonol biosynthetic process	2.61E-03
69	GO:0000103: sulfate assimilation	2.61E-03
70	GO:0009688: abscisic acid biosynthetic process	2.61E-03
71	GO:0048829: root cap development	2.61E-03
72	GO:0046856: phosphatidylinositol dephosphorylation	2.87E-03
73	GO:0010015: root morphogenesis	2.87E-03
74	GO:0006096: glycolytic process	2.99E-03
75	GO:0055046: microgametogenesis	3.43E-03
76	GO:0009933: meristem structural organization	3.73E-03
77	GO:0019853: L-ascorbic acid biosynthetic process	4.03E-03
78	GO:0090351: seedling development	4.03E-03
79	GO:0010053: root epidermal cell differentiation	4.03E-03
80	GO:0009225: nucleotide-sugar metabolic process	4.03E-03
81	GO:0034976: response to endoplasmic reticulum stress	4.34E-03
82	GO:0009116: nucleoside metabolic process	4.65E-03
83	GO:0015031: protein transport	4.94E-03
84	GO:0008299: isoprenoid biosynthetic process	4.98E-03
85	GO:0019915: lipid storage	5.32E-03
86	GO:0006366: transcription from RNA polymerase II promoter	5.32E-03
87	GO:0006730: one-carbon metabolic process	5.66E-03
88	GO:0030433: ubiquitin-dependent ERAD pathway	5.66E-03
89	GO:0019748: secondary metabolic process	5.66E-03
90	GO:0009693: ethylene biosynthetic process	6.01E-03
91	GO:0009651: response to salt stress	6.19E-03
92	GO:0042127: regulation of cell proliferation	6.36E-03
93	GO:0008284: positive regulation of cell proliferation	6.73E-03
94	GO:0010501: RNA secondary structure unwinding	7.10E-03
95	GO:0006662: glycerol ether metabolic process	7.48E-03
96	GO:0006814: sodium ion transport	7.87E-03
97	GO:0009646: response to absence of light	7.87E-03
98	GO:0009851: auxin biosynthetic process	8.26E-03
99	GO:0006635: fatty acid beta-oxidation	8.66E-03
100	GO:0016032: viral process	9.07E-03
101	GO:0055114: oxidation-reduction process	9.36E-03
102	GO:0071281: cellular response to iron ion	9.48E-03
103	GO:0019760: glucosinolate metabolic process	9.91E-03
104	GO:0006914: autophagy	9.91E-03
105	GO:0071805: potassium ion transmembrane transport	1.03E-02
106	GO:0048573: photoperiodism, flowering	1.26E-02
107	GO:0010311: lateral root formation	1.40E-02
108	GO:0048767: root hair elongation	1.40E-02
109	GO:0045454: cell redox homeostasis	1.42E-02
110	GO:0009407: toxin catabolic process	1.45E-02
111	GO:0007568: aging	1.50E-02
112	GO:0034599: cellular response to oxidative stress	1.65E-02
113	GO:0009751: response to salicylic acid	1.73E-02
114	GO:0006839: mitochondrial transport	1.76E-02
115	GO:0008283: cell proliferation	1.92E-02
116	GO:0009744: response to sucrose	1.92E-02
117	GO:0051707: response to other organism	1.92E-02
118	GO:0009965: leaf morphogenesis	2.08E-02
119	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.33E-02
120	GO:0006486: protein glycosylation	2.37E-02
121	GO:0048367: shoot system development	2.73E-02
122	GO:0009738: abscisic acid-activated signaling pathway	3.02E-02
123	GO:0007275: multicellular organism development	3.55E-02
124	GO:0009790: embryo development	3.99E-02
125	GO:0006413: translational initiation	4.27E-02
126	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.86E-02
127	GO:0007166: cell surface receptor signaling pathway	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
3	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
4	GO:0016504: peptidase activator activity	0.00E+00
5	GO:0008320: protein transmembrane transporter activity	3.42E-05
6	GO:0102293: pheophytinase b activity	8.61E-05
7	GO:0019786: Atg8-specific protease activity	8.61E-05
8	GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	8.61E-05
9	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	8.61E-05
10	GO:0004476: mannose-6-phosphate isomerase activity	8.61E-05
11	GO:0030234: enzyme regulator activity	1.03E-04
12	GO:0050347: trans-octaprenyltranstransferase activity	2.04E-04
13	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.04E-04
14	GO:0019779: Atg8 activating enzyme activity	2.04E-04
15	GO:0050377: UDP-glucose 4,6-dehydratase activity	2.04E-04
16	GO:0015117: thiosulfate transmembrane transporter activity	2.04E-04
17	GO:1901677: phosphate transmembrane transporter activity	2.04E-04
18	GO:0047746: chlorophyllase activity	2.04E-04
19	GO:0010297: heteropolysaccharide binding	2.04E-04
20	GO:0008460: dTDP-glucose 4,6-dehydratase activity	2.04E-04
21	GO:0010280: UDP-L-rhamnose synthase activity	2.04E-04
22	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	3.42E-04
23	GO:0005310: dicarboxylic acid transmembrane transporter activity	3.42E-04
24	GO:0015141: succinate transmembrane transporter activity	3.42E-04
25	GO:0004478: methionine adenosyltransferase activity	3.42E-04
26	GO:0015131: oxaloacetate transmembrane transporter activity	4.92E-04
27	GO:0016656: monodehydroascorbate reductase (NADH) activity	4.92E-04
28	GO:0004165: dodecenoyl-CoA delta-isomerase activity	4.92E-04
29	GO:0017077: oxidative phosphorylation uncoupler activity	4.92E-04
30	GO:0004749: ribose phosphate diphosphokinase activity	4.92E-04
31	GO:0000993: RNA polymerase II core binding	6.55E-04
32	GO:0070628: proteasome binding	6.55E-04
33	GO:0004031: aldehyde oxidase activity	6.55E-04
34	GO:0050302: indole-3-acetaldehyde oxidase activity	6.55E-04
35	GO:0019776: Atg8 ligase activity	6.55E-04
36	GO:0004659: prenyltransferase activity	6.55E-04
37	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.01E-03
38	GO:0036402: proteasome-activating ATPase activity	1.01E-03
39	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.07E-03
40	GO:0003872: 6-phosphofructokinase activity	1.41E-03
41	GO:0015140: malate transmembrane transporter activity	1.41E-03
42	GO:0003746: translation elongation factor activity	1.48E-03
43	GO:0050660: flavin adenine dinucleotide binding	1.68E-03
44	GO:0004743: pyruvate kinase activity	2.35E-03
45	GO:0045309: protein phosphorylated amino acid binding	2.35E-03
46	GO:0030955: potassium ion binding	2.35E-03
47	GO:0015386: potassium:proton antiporter activity	2.87E-03
48	GO:0019904: protein domain specific binding	2.87E-03
49	GO:0004161: dimethylallyltranstransferase activity	2.87E-03
50	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.15E-03
51	GO:0015116: sulfate transmembrane transporter activity	3.15E-03
52	GO:0017025: TBP-class protein binding	4.03E-03
53	GO:0001046: core promoter sequence-specific DNA binding	4.65E-03
54	GO:0016887: ATPase activity	5.24E-03
55	GO:0004298: threonine-type endopeptidase activity	5.32E-03
56	GO:0003756: protein disulfide isomerase activity	6.36E-03
57	GO:0047134: protein-disulfide reductase activity	6.73E-03
58	GO:0004402: histone acetyltransferase activity	7.10E-03
59	GO:0004791: thioredoxin-disulfide reductase activity	7.87E-03
60	GO:0016853: isomerase activity	7.87E-03
61	GO:0030246: carbohydrate binding	9.07E-03
62	GO:0000287: magnesium ion binding	9.38E-03
63	GO:0015385: sodium:proton antiporter activity	9.48E-03
64	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.48E-03
65	GO:0008237: metallopeptidase activity	1.03E-02
66	GO:0051213: dioxygenase activity	1.12E-02
67	GO:0008375: acetylglucosaminyltransferase activity	1.21E-02
68	GO:0004004: ATP-dependent RNA helicase activity	1.26E-02
69	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.35E-02
70	GO:0005506: iron ion binding	1.49E-02
71	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.50E-02
72	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.50E-02
73	GO:0044212: transcription regulatory region DNA binding	1.52E-02
74	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.60E-02
75	GO:0004364: glutathione transferase activity	1.86E-02
76	GO:0009055: electron carrier activity	1.89E-02
77	GO:0051537: 2 iron, 2 sulfur cluster binding	2.02E-02
78	GO:0005524: ATP binding	2.51E-02
79	GO:0031625: ubiquitin protein ligase binding	2.55E-02
80	GO:0015035: protein disulfide oxidoreductase activity	3.11E-02
81	GO:0008026: ATP-dependent helicase activity	3.17E-02
82	GO:0004386: helicase activity	3.24E-02
83	GO:0046872: metal ion binding	3.32E-02
84	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.64E-02
85	GO:0016301: kinase activity	3.83E-02
86	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.27E-02
87	GO:0015297: antiporter activity	4.34E-02
88	GO:0019825: oxygen binding	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	4.93E-07
2	GO:0008541: proteasome regulatory particle, lid subcomplex	1.87E-06
3	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.42E-05
4	GO:0032580: Golgi cisterna membrane	4.28E-05
5	GO:0008023: transcription elongation factor complex	8.61E-05
6	GO:0005829: cytosol	9.84E-05
7	GO:0005886: plasma membrane	3.06E-04
8	GO:0005839: proteasome core complex	3.20E-04
9	GO:0030130: clathrin coat of trans-Golgi network vesicle	3.42E-04
10	GO:0030132: clathrin coat of coated pit	3.42E-04
11	GO:0033588: Elongator holoenzyme complex	4.92E-04
12	GO:0005775: vacuolar lumen	4.92E-04
13	GO:0005776: autophagosome	6.55E-04
14	GO:0005945: 6-phosphofructokinase complex	8.29E-04
15	GO:0005737: cytoplasm	1.10E-03
16	GO:0031597: cytosolic proteasome complex	1.20E-03
17	GO:0000123: histone acetyltransferase complex	1.41E-03
18	GO:0031595: nuclear proteasome complex	1.41E-03
19	GO:0005789: endoplasmic reticulum membrane	1.56E-03
20	GO:0000421: autophagosome membrane	1.63E-03
21	GO:0019773: proteasome core complex, alpha-subunit complex	1.86E-03
22	GO:0005811: lipid particle	1.86E-03
23	GO:0008540: proteasome regulatory particle, base subcomplex	2.35E-03
24	GO:0031410: cytoplasmic vesicle	5.66E-03
25	GO:0005744: mitochondrial inner membrane presequence translocase complex	6.36E-03
26	GO:0005783: endoplasmic reticulum	7.24E-03
27	GO:0009506: plasmodesma	9.12E-03
28	GO:0005788: endoplasmic reticulum lumen	1.17E-02
29	GO:0005635: nuclear envelope	2.49E-02
30	GO:0016021: integral component of membrane	2.64E-02
31	GO:0010008: endosome membrane	2.73E-02
32	GO:0005773: vacuole	4.17E-02