Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G22850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009661: chromoplast organization0.00E+00
2GO:0046471: phosphatidylglycerol metabolic process0.00E+00
3GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
4GO:1905157: positive regulation of photosynthesis0.00E+00
5GO:1902171: regulation of tocopherol cyclase activity0.00E+00
6GO:1901918: negative regulation of exoribonuclease activity0.00E+00
7GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0005996: monosaccharide metabolic process0.00E+00
10GO:0016118: carotenoid catabolic process0.00E+00
11GO:0009773: photosynthetic electron transport in photosystem I3.12E-08
12GO:0010207: photosystem II assembly1.02E-07
13GO:0015995: chlorophyll biosynthetic process6.42E-07
14GO:0015979: photosynthesis2.27E-06
15GO:0055114: oxidation-reduction process9.18E-06
16GO:0032544: plastid translation2.37E-05
17GO:0090391: granum assembly2.54E-05
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.54E-05
19GO:0071484: cellular response to light intensity5.54E-05
20GO:0015994: chlorophyll metabolic process9.74E-05
21GO:0042549: photosystem II stabilization2.16E-04
22GO:0010190: cytochrome b6f complex assembly2.16E-04
23GO:0032259: methylation2.20E-04
24GO:0009768: photosynthesis, light harvesting in photosystem I2.37E-04
25GO:1901259: chloroplast rRNA processing2.91E-04
26GO:0034599: cellular response to oxidative stress3.30E-04
27GO:0010196: nonphotochemical quenching3.76E-04
28GO:0071277: cellular response to calcium ion4.05E-04
29GO:0065002: intracellular protein transmembrane transport4.05E-04
30GO:0080093: regulation of photorespiration4.05E-04
31GO:0019276: UDP-N-acetylgalactosamine metabolic process4.05E-04
32GO:0031998: regulation of fatty acid beta-oxidation4.05E-04
33GO:0010028: xanthophyll cycle4.05E-04
34GO:0034337: RNA folding4.05E-04
35GO:0000023: maltose metabolic process4.05E-04
36GO:0006047: UDP-N-acetylglucosamine metabolic process4.05E-04
37GO:0000476: maturation of 4.5S rRNA4.05E-04
38GO:0000967: rRNA 5'-end processing4.05E-04
39GO:0000025: maltose catabolic process4.05E-04
40GO:0009090: homoserine biosynthetic process4.05E-04
41GO:0046467: membrane lipid biosynthetic process4.05E-04
42GO:0005980: glycogen catabolic process4.05E-04
43GO:0015671: oxygen transport4.05E-04
44GO:0043953: protein transport by the Tat complex4.05E-04
45GO:0010114: response to red light4.62E-04
46GO:0050821: protein stabilization4.71E-04
47GO:0009657: plastid organization5.75E-04
48GO:0019252: starch biosynthetic process6.28E-04
49GO:0010206: photosystem II repair6.89E-04
50GO:0006098: pentose-phosphate shunt6.89E-04
51GO:1901657: glycosyl compound metabolic process8.06E-04
52GO:0005982: starch metabolic process8.13E-04
53GO:0071457: cellular response to ozone8.76E-04
54GO:1904143: positive regulation of carotenoid biosynthetic process8.76E-04
55GO:0016122: xanthophyll metabolic process8.76E-04
56GO:0016121: carotene catabolic process8.76E-04
57GO:0034470: ncRNA processing8.76E-04
58GO:0016124: xanthophyll catabolic process8.76E-04
59GO:0080029: cellular response to boron-containing substance levels8.76E-04
60GO:0005976: polysaccharide metabolic process8.76E-04
61GO:0006898: receptor-mediated endocytosis8.76E-04
62GO:0010027: thylakoid membrane organization1.09E-03
63GO:0006094: gluconeogenesis1.41E-03
64GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.42E-03
65GO:0006518: peptide metabolic process1.42E-03
66GO:0010143: cutin biosynthetic process1.59E-03
67GO:0006636: unsaturated fatty acid biosynthetic process1.99E-03
68GO:0046713: borate transport2.06E-03
69GO:0009067: aspartate family amino acid biosynthetic process2.06E-03
70GO:1902358: sulfate transmembrane transport2.06E-03
71GO:0006020: inositol metabolic process2.06E-03
72GO:0009152: purine ribonucleotide biosynthetic process2.06E-03
73GO:0046653: tetrahydrofolate metabolic process2.06E-03
74GO:0009052: pentose-phosphate shunt, non-oxidative branch2.06E-03
75GO:0006631: fatty acid metabolic process2.56E-03
76GO:0010021: amylopectin biosynthetic process2.76E-03
77GO:0071486: cellular response to high light intensity2.76E-03
78GO:0009765: photosynthesis, light harvesting2.76E-03
79GO:0045727: positive regulation of translation2.76E-03
80GO:0006021: inositol biosynthetic process2.76E-03
81GO:0071483: cellular response to blue light2.76E-03
82GO:0019748: secondary metabolic process2.93E-03
83GO:0006097: glyoxylate cycle3.54E-03
84GO:0071493: cellular response to UV-B3.54E-03
85GO:0016120: carotene biosynthetic process3.54E-03
86GO:0006564: L-serine biosynthetic process3.54E-03
87GO:0009904: chloroplast accumulation movement3.54E-03
88GO:0006656: phosphatidylcholine biosynthetic process3.54E-03
89GO:0006810: transport3.55E-03
90GO:0005975: carbohydrate metabolic process3.84E-03
91GO:0042631: cellular response to water deprivation4.07E-03
92GO:0046855: inositol phosphate dephosphorylation4.38E-03
93GO:0010304: PSII associated light-harvesting complex II catabolic process4.38E-03
94GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.38E-03
95GO:1902456: regulation of stomatal opening4.38E-03
96GO:0006662: glycerol ether metabolic process4.38E-03
97GO:0009228: thiamine biosynthetic process4.38E-03
98GO:0009643: photosynthetic acclimation4.38E-03
99GO:0006096: glycolytic process5.15E-03
100GO:0009903: chloroplast avoidance movement5.27E-03
101GO:0010189: vitamin E biosynthetic process5.27E-03
102GO:0009854: oxidative photosynthetic carbon pathway5.27E-03
103GO:0009088: threonine biosynthetic process5.27E-03
104GO:0071333: cellular response to glucose stimulus5.27E-03
105GO:0009955: adaxial/abaxial pattern specification5.27E-03
106GO:0009395: phospholipid catabolic process6.23E-03
107GO:0009772: photosynthetic electron transport in photosystem II6.23E-03
108GO:1900056: negative regulation of leaf senescence6.23E-03
109GO:1900057: positive regulation of leaf senescence6.23E-03
110GO:0009645: response to low light intensity stimulus6.23E-03
111GO:0008272: sulfate transport6.23E-03
112GO:0009769: photosynthesis, light harvesting in photosystem II6.23E-03
113GO:0070413: trehalose metabolism in response to stress7.25E-03
114GO:0030091: protein repair7.25E-03
115GO:0019827: stem cell population maintenance7.25E-03
116GO:0005978: glycogen biosynthetic process7.25E-03
117GO:0009642: response to light intensity7.25E-03
118GO:0009704: de-etiolation7.25E-03
119GO:0071482: cellular response to light stimulus8.32E-03
120GO:0015996: chlorophyll catabolic process8.32E-03
121GO:0019430: removal of superoxide radicals8.32E-03
122GO:0006754: ATP biosynthetic process9.45E-03
123GO:0009821: alkaloid biosynthetic process9.45E-03
124GO:0090333: regulation of stomatal closure9.45E-03
125GO:0019432: triglyceride biosynthetic process9.45E-03
126GO:0006783: heme biosynthetic process9.45E-03
127GO:0016311: dephosphorylation9.75E-03
128GO:0018298: protein-chromophore linkage1.03E-02
129GO:0042761: very long-chain fatty acid biosynthetic process1.06E-02
130GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
131GO:0009086: methionine biosynthetic process1.06E-02
132GO:0010380: regulation of chlorophyll biosynthetic process1.06E-02
133GO:0010218: response to far red light1.13E-02
134GO:0009641: shade avoidance1.19E-02
135GO:0006535: cysteine biosynthetic process from serine1.19E-02
136GO:0006782: protoporphyrinogen IX biosynthetic process1.19E-02
137GO:0009637: response to blue light1.30E-02
138GO:0009853: photorespiration1.30E-02
139GO:0018119: peptidyl-cysteine S-nitrosylation1.31E-02
140GO:0009089: lysine biosynthetic process via diaminopimelate1.31E-02
141GO:0072593: reactive oxygen species metabolic process1.31E-02
142GO:0043085: positive regulation of catalytic activity1.31E-02
143GO:0000272: polysaccharide catabolic process1.31E-02
144GO:0006415: translational termination1.31E-02
145GO:0006790: sulfur compound metabolic process1.45E-02
146GO:0005983: starch catabolic process1.45E-02
147GO:0018107: peptidyl-threonine phosphorylation1.58E-02
148GO:0009725: response to hormone1.58E-02
149GO:0030048: actin filament-based movement1.58E-02
150GO:0006108: malate metabolic process1.58E-02
151GO:0006006: glucose metabolic process1.58E-02
152GO:0019253: reductive pentose-phosphate cycle1.73E-02
153GO:0010223: secondary shoot formation1.73E-02
154GO:0009266: response to temperature stimulus1.73E-02
155GO:0007015: actin filament organization1.73E-02
156GO:0046854: phosphatidylinositol phosphorylation1.87E-02
157GO:0019762: glucosinolate catabolic process2.02E-02
158GO:0010025: wax biosynthetic process2.02E-02
159GO:0005992: trehalose biosynthetic process2.18E-02
160GO:0019344: cysteine biosynthetic process2.18E-02
161GO:0009658: chloroplast organization2.28E-02
162GO:0006364: rRNA processing2.28E-02
163GO:0016998: cell wall macromolecule catabolic process2.50E-02
164GO:0019915: lipid storage2.50E-02
165GO:0061077: chaperone-mediated protein folding2.50E-02
166GO:0009269: response to desiccation2.50E-02
167GO:0016114: terpenoid biosynthetic process2.50E-02
168GO:0016226: iron-sulfur cluster assembly2.66E-02
169GO:0030433: ubiquitin-dependent ERAD pathway2.66E-02
170GO:0071215: cellular response to abscisic acid stimulus2.83E-02
171GO:0009735: response to cytokinin2.88E-02
172GO:0046686: response to cadmium ion2.89E-02
173GO:0080167: response to karrikin2.98E-02
174GO:0009306: protein secretion3.01E-02
175GO:0016117: carotenoid biosynthetic process3.19E-02
176GO:0000413: protein peptidyl-prolyl isomerization3.37E-02
177GO:0009741: response to brassinosteroid3.55E-02
178GO:0006520: cellular amino acid metabolic process3.55E-02
179GO:0071472: cellular response to salt stress3.55E-02
180GO:0045454: cell redox homeostasis3.73E-02
181GO:0015986: ATP synthesis coupled proton transport3.74E-02
182GO:0009058: biosynthetic process4.27E-02
183GO:0032502: developmental process4.32E-02
184GO:0009630: gravitropism4.32E-02
185GO:0009567: double fertilization forming a zygote and endosperm4.73E-02
RankGO TermAdjusted P value
1GO:0008465: glycerate dehydrogenase activity0.00E+00
2GO:0046408: chlorophyll synthetase activity0.00E+00
3GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
4GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
5GO:0047668: amygdalin beta-glucosidase activity0.00E+00
6GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
7GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
8GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
9GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
10GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
11GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
12GO:0045550: geranylgeranyl reductase activity0.00E+00
13GO:0080082: esculin beta-glucosidase activity0.00E+00
14GO:0046422: violaxanthin de-epoxidase activity0.00E+00
15GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
16GO:0004567: beta-mannosidase activity0.00E+00
17GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
18GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
19GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
20GO:0009011: starch synthase activity9.48E-07
21GO:0010297: heteropolysaccharide binding7.32E-06
22GO:0018708: thiol S-methyltransferase activity7.32E-06
23GO:0004373: glycogen (starch) synthase activity2.54E-05
24GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.74E-05
25GO:0031409: pigment binding1.78E-04
26GO:0004332: fructose-bisphosphate aldolase activity2.16E-04
27GO:0008168: methyltransferase activity2.69E-04
28GO:0003993: acid phosphatase activity3.30E-04
29GO:0031957: very long-chain fatty acid-CoA ligase activity4.05E-04
30GO:0045486: naringenin 3-dioxygenase activity4.05E-04
31GO:0005344: oxygen transporter activity4.05E-04
32GO:0035671: enone reductase activity4.05E-04
33GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity4.05E-04
34GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.05E-04
35GO:0080079: cellobiose glucosidase activity4.05E-04
36GO:0008184: glycogen phosphorylase activity4.05E-04
37GO:0004134: 4-alpha-glucanotransferase activity4.05E-04
38GO:0004645: phosphorylase activity4.05E-04
39GO:0034256: chlorophyll(ide) b reductase activity4.05E-04
40GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.05E-04
41GO:0015168: glycerol transmembrane transporter activity4.05E-04
42GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity4.05E-04
43GO:0050017: L-3-cyanoalanine synthase activity8.76E-04
44GO:0008883: glutamyl-tRNA reductase activity8.76E-04
45GO:0047746: chlorophyllase activity8.76E-04
46GO:0042389: omega-3 fatty acid desaturase activity8.76E-04
47GO:0009977: proton motive force dependent protein transmembrane transporter activity8.76E-04
48GO:0004617: phosphoglycerate dehydrogenase activity8.76E-04
49GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity8.76E-04
50GO:0052832: inositol monophosphate 3-phosphatase activity8.76E-04
51GO:0033201: alpha-1,4-glucan synthase activity8.76E-04
52GO:0003844: 1,4-alpha-glucan branching enzyme activity8.76E-04
53GO:0019172: glyoxalase III activity8.76E-04
54GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.76E-04
55GO:0008934: inositol monophosphate 1-phosphatase activity8.76E-04
56GO:0052833: inositol monophosphate 4-phosphatase activity8.76E-04
57GO:0004412: homoserine dehydrogenase activity8.76E-04
58GO:0000234: phosphoethanolamine N-methyltransferase activity8.76E-04
59GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.76E-04
60GO:0016168: chlorophyll binding1.16E-03
61GO:0102483: scopolin beta-glucosidase activity1.33E-03
62GO:0004565: beta-galactosidase activity1.41E-03
63GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.42E-03
64GO:0008864: formyltetrahydrofolate deformylase activity1.42E-03
65GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.42E-03
66GO:0043169: cation binding1.42E-03
67GO:0050734: hydroxycinnamoyltransferase activity1.42E-03
68GO:0004751: ribose-5-phosphate isomerase activity1.42E-03
69GO:0016851: magnesium chelatase activity2.06E-03
70GO:0046715: borate transmembrane transporter activity2.06E-03
71GO:0004072: aspartate kinase activity2.06E-03
72GO:0019201: nucleotide kinase activity2.06E-03
73GO:0016149: translation release factor activity, codon specific2.06E-03
74GO:0022890: inorganic cation transmembrane transporter activity2.06E-03
75GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.06E-03
76GO:0008422: beta-glucosidase activity2.30E-03
77GO:0050661: NADP binding2.43E-03
78GO:0016491: oxidoreductase activity2.74E-03
79GO:0015204: urea transmembrane transporter activity2.76E-03
80GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.54E-03
81GO:0051287: NAD binding3.63E-03
82GO:0047134: protein-disulfide reductase activity3.76E-03
83GO:0016615: malate dehydrogenase activity4.38E-03
84GO:0008200: ion channel inhibitor activity4.38E-03
85GO:2001070: starch binding4.38E-03
86GO:0004462: lactoylglutathione lyase activity4.38E-03
87GO:0004784: superoxide dismutase activity4.38E-03
88GO:0004791: thioredoxin-disulfide reductase activity4.71E-03
89GO:0004124: cysteine synthase activity5.27E-03
90GO:0004017: adenylate kinase activity5.27E-03
91GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.27E-03
92GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.27E-03
93GO:0102391: decanoate--CoA ligase activity5.27E-03
94GO:0030060: L-malate dehydrogenase activity5.27E-03
95GO:0048038: quinone binding5.42E-03
96GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.17E-03
97GO:0004467: long-chain fatty acid-CoA ligase activity6.23E-03
98GO:0016597: amino acid binding7.41E-03
99GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.32E-03
100GO:0008271: secondary active sulfate transmembrane transporter activity8.32E-03
101GO:0019843: rRNA binding8.69E-03
102GO:0003747: translation release factor activity9.45E-03
103GO:0016844: strictosidine synthase activity1.06E-02
104GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.06E-02
105GO:0030234: enzyme regulator activity1.19E-02
106GO:0008047: enzyme activator activity1.19E-02
107GO:0047372: acylglycerol lipase activity1.31E-02
108GO:0015386: potassium:proton antiporter activity1.31E-02
109GO:0015116: sulfate transmembrane transporter activity1.45E-02
110GO:0031072: heat shock protein binding1.58E-02
111GO:0003725: double-stranded RNA binding1.58E-02
112GO:0004022: alcohol dehydrogenase (NAD) activity1.58E-02
113GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.68E-02
114GO:0004185: serine-type carboxypeptidase activity1.69E-02
115GO:0008266: poly(U) RNA binding1.73E-02
116GO:0003774: motor activity1.73E-02
117GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.73E-02
118GO:0042802: identical protein binding1.78E-02
119GO:0051537: 2 iron, 2 sulfur cluster binding1.82E-02
120GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.97E-02
121GO:0016787: hydrolase activity2.16E-02
122GO:0051536: iron-sulfur cluster binding2.18E-02
123GO:0031418: L-ascorbic acid binding2.18E-02
124GO:0005528: FK506 binding2.18E-02
125GO:0015079: potassium ion transmembrane transporter activity2.33E-02
126GO:0016788: hydrolase activity, acting on ester bonds2.33E-02
127GO:0016779: nucleotidyltransferase activity2.66E-02
128GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.78E-02
129GO:0003727: single-stranded RNA binding3.01E-02
130GO:0003756: protein disulfide isomerase activity3.01E-02
131GO:0015035: protein disulfide oxidoreductase activity3.34E-02
132GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.55E-02
133GO:0016853: isomerase activity3.74E-02
134GO:0015299: solute:proton antiporter activity3.74E-02
135GO:0050662: coenzyme binding3.74E-02
136GO:0004872: receptor activity3.93E-02
137GO:0016762: xyloglucan:xyloglucosyl transferase activity4.12E-02
138GO:0030170: pyridoxal phosphate binding4.49E-02
139GO:0000156: phosphorelay response regulator activity4.52E-02
140GO:0016791: phosphatase activity4.73E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast9.26E-43
4GO:0009534: chloroplast thylakoid6.69E-30
5GO:0009535: chloroplast thylakoid membrane1.90E-28
6GO:0009941: chloroplast envelope2.44E-14
7GO:0009579: thylakoid2.24E-13
8GO:0009543: chloroplast thylakoid lumen1.82E-12
9GO:0031977: thylakoid lumen2.18E-10
10GO:0009570: chloroplast stroma2.89E-10
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.96E-09
12GO:0031969: chloroplast membrane1.14E-07
13GO:0010287: plastoglobule2.57E-07
14GO:0033281: TAT protein transport complex2.54E-05
15GO:0030076: light-harvesting complex1.52E-04
16GO:0009654: photosystem II oxygen evolving complex2.37E-04
17GO:0031361: integral component of thylakoid membrane4.05E-04
18GO:0009515: granal stacked thylakoid4.05E-04
19GO:0009501: amyloplast4.71E-04
20GO:0019898: extrinsic component of membrane6.28E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex8.76E-04
22GO:0009569: chloroplast starch grain8.76E-04
23GO:0010007: magnesium chelatase complex1.42E-03
24GO:0030095: chloroplast photosystem II1.59E-03
25GO:0048046: apoplast2.15E-03
26GO:0042651: thylakoid membrane2.43E-03
27GO:0009544: chloroplast ATP synthase complex2.76E-03
28GO:0009517: PSII associated light-harvesting complex II2.76E-03
29GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.38E-03
30GO:0009522: photosystem I4.71E-03
31GO:0009523: photosystem II5.06E-03
32GO:0010319: stromule6.98E-03
33GO:0031982: vesicle7.25E-03
34GO:0005763: mitochondrial small ribosomal subunit9.45E-03
35GO:0008180: COP9 signalosome9.45E-03
36GO:0016459: myosin complex1.19E-02
37GO:0032040: small-subunit processome1.45E-02
38GO:0043234: protein complex2.02E-02
39GO:0015935: small ribosomal subunit2.50E-02
40GO:0005773: vacuole3.10E-02
41GO:0005840: ribosome3.73E-02
42GO:0005777: peroxisome4.01E-02
43GO:0005623: cell4.16E-02
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Gene type



Gene DE type