co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G22700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0071000: response to magnetism	0.00E+00
3	GO:0000372: Group I intron splicing	0.00E+00
4	GO:0033528: S-methylmethionine cycle	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0043087: regulation of GTPase activity	0.00E+00
8	GO:0006399: tRNA metabolic process	0.00E+00
9	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
10	GO:0070979: protein K11-linked ubiquitination	0.00E+00
11	GO:2000505: regulation of energy homeostasis	0.00E+00
12	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
13	GO:0010207: photosystem II assembly	5.75E-06
14	GO:0000373: Group II intron splicing	3.67E-05
15	GO:1901332: negative regulation of lateral root development	6.06E-05
16	GO:0016123: xanthophyll biosynthetic process	1.64E-04
17	GO:0010158: abaxial cell fate specification	1.64E-04
18	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.34E-04
19	GO:0009793: embryo development ending in seed dormancy	2.52E-04
20	GO:0051510: regulation of unidimensional cell growth	4.06E-04
21	GO:0009090: homoserine biosynthetic process	4.26E-04
22	GO:0000012: single strand break repair	4.26E-04
23	GO:0043266: regulation of potassium ion transport	4.26E-04
24	GO:0010080: regulation of floral meristem growth	4.26E-04
25	GO:1902025: nitrate import	4.26E-04
26	GO:0042547: cell wall modification involved in multidimensional cell growth	4.26E-04
27	GO:0072387: flavin adenine dinucleotide metabolic process	4.26E-04
28	GO:2000021: regulation of ion homeostasis	4.26E-04
29	GO:0006436: tryptophanyl-tRNA aminoacylation	4.26E-04
30	GO:0090548: response to nitrate starvation	4.26E-04
31	GO:0000066: mitochondrial ornithine transport	4.26E-04
32	GO:0006419: alanyl-tRNA aminoacylation	4.26E-04
33	GO:0016117: carotenoid biosynthetic process	4.73E-04
34	GO:0009086: methionine biosynthetic process	8.75E-04
35	GO:0060359: response to ammonium ion	9.21E-04
36	GO:0048255: mRNA stabilization	9.21E-04
37	GO:0010617: circadian regulation of calcium ion oscillation	9.21E-04
38	GO:0099402: plant organ development	9.21E-04
39	GO:0006435: threonyl-tRNA aminoacylation	9.21E-04
40	GO:0010343: singlet oxygen-mediated programmed cell death	9.21E-04
41	GO:1901529: positive regulation of anion channel activity	9.21E-04
42	GO:0010582: floral meristem determinacy	1.34E-03
43	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.50E-03
44	GO:0010022: meristem determinacy	1.50E-03
45	GO:0010623: programmed cell death involved in cell development	1.50E-03
46	GO:1901672: positive regulation of systemic acquired resistance	1.50E-03
47	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.50E-03
48	GO:0006696: ergosterol biosynthetic process	1.50E-03
49	GO:0043157: response to cation stress	1.50E-03
50	GO:1902448: positive regulation of shade avoidance	1.50E-03
51	GO:0006094: gluconeogenesis	1.52E-03
52	GO:0090351: seedling development	1.92E-03
53	GO:0042989: sequestering of actin monomers	2.17E-03
54	GO:1990019: protein storage vacuole organization	2.17E-03
55	GO:2001141: regulation of RNA biosynthetic process	2.17E-03
56	GO:0009067: aspartate family amino acid biosynthetic process	2.17E-03
57	GO:0051513: regulation of monopolar cell growth	2.17E-03
58	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.17E-03
59	GO:0051639: actin filament network formation	2.17E-03
60	GO:0034059: response to anoxia	2.17E-03
61	GO:0009800: cinnamic acid biosynthetic process	2.17E-03
62	GO:0010508: positive regulation of autophagy	2.91E-03
63	GO:0008295: spermidine biosynthetic process	2.91E-03
64	GO:1902347: response to strigolactone	2.91E-03
65	GO:0051781: positive regulation of cell division	2.91E-03
66	GO:0051764: actin crosslink formation	2.91E-03
67	GO:0048442: sepal development	2.91E-03
68	GO:0051322: anaphase	2.91E-03
69	GO:0006661: phosphatidylinositol biosynthetic process	2.91E-03
70	GO:0030041: actin filament polymerization	3.73E-03
71	GO:0010117: photoprotection	3.73E-03
72	GO:0046283: anthocyanin-containing compound metabolic process	3.73E-03
73	GO:0010236: plastoquinone biosynthetic process	3.73E-03
74	GO:0045038: protein import into chloroplast thylakoid membrane	3.73E-03
75	GO:1902183: regulation of shoot apical meristem development	3.73E-03
76	GO:0032876: negative regulation of DNA endoreduplication	3.73E-03
77	GO:0080110: sporopollenin biosynthetic process	3.73E-03
78	GO:1901371: regulation of leaf morphogenesis	4.61E-03
79	GO:0006559: L-phenylalanine catabolic process	4.61E-03
80	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.61E-03
81	GO:0009959: negative gravitropism	4.61E-03
82	GO:0060918: auxin transport	4.61E-03
83	GO:0007059: chromosome segregation	5.10E-03
84	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.57E-03
85	GO:0010076: maintenance of floral meristem identity	5.57E-03
86	GO:0009088: threonine biosynthetic process	5.57E-03
87	GO:0010310: regulation of hydrogen peroxide metabolic process	5.57E-03
88	GO:0042372: phylloquinone biosynthetic process	5.57E-03
89	GO:0048316: seed development	5.92E-03
90	GO:0007264: small GTPase mediated signal transduction	6.26E-03
91	GO:0009658: chloroplast organization	6.31E-03
92	GO:0010050: vegetative phase change	6.58E-03
93	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.58E-03
94	GO:0006400: tRNA modification	6.58E-03
95	GO:0015693: magnesium ion transport	6.58E-03
96	GO:0006955: immune response	6.58E-03
97	GO:0009850: auxin metabolic process	7.65E-03
98	GO:0006605: protein targeting	7.65E-03
99	GO:0042255: ribosome assembly	7.65E-03
100	GO:0032875: regulation of DNA endoreduplication	7.65E-03
101	GO:0006353: DNA-templated transcription, termination	7.65E-03
102	GO:0070413: trehalose metabolism in response to stress	7.65E-03
103	GO:0045010: actin nucleation	7.65E-03
104	GO:0010492: maintenance of shoot apical meristem identity	7.65E-03
105	GO:0000105: histidine biosynthetic process	7.65E-03
106	GO:0048564: photosystem I assembly	7.65E-03
107	GO:0010027: thylakoid membrane organization	8.49E-03
108	GO:0009657: plastid organization	8.79E-03
109	GO:0032544: plastid translation	8.79E-03
110	GO:0071482: cellular response to light stimulus	8.79E-03
111	GO:0022900: electron transport chain	8.79E-03
112	GO:0010206: photosystem II repair	9.98E-03
113	GO:2000024: regulation of leaf development	9.98E-03
114	GO:0048507: meristem development	9.98E-03
115	GO:0090305: nucleic acid phosphodiester bond hydrolysis	9.98E-03
116	GO:0006098: pentose-phosphate shunt	9.98E-03
117	GO:0018298: protein-chromophore linkage	1.11E-02
118	GO:1900426: positive regulation of defense response to bacterium	1.12E-02
119	GO:0009638: phototropism	1.12E-02
120	GO:0009416: response to light stimulus	1.19E-02
121	GO:0006535: cysteine biosynthetic process from serine	1.25E-02
122	GO:0048441: petal development	1.25E-02
123	GO:0006259: DNA metabolic process	1.25E-02
124	GO:0009299: mRNA transcription	1.25E-02
125	GO:0006265: DNA topological change	1.39E-02
126	GO:0009089: lysine biosynthetic process via diaminopimelate	1.39E-02
127	GO:1903507: negative regulation of nucleic acid-templated transcription	1.39E-02
128	GO:0006352: DNA-templated transcription, initiation	1.39E-02
129	GO:0006415: translational termination	1.39E-02
130	GO:0009637: response to blue light	1.41E-02
131	GO:0009451: RNA modification	1.49E-02
132	GO:0045037: protein import into chloroplast stroma	1.53E-02
133	GO:0006839: mitochondrial transport	1.61E-02
134	GO:0009785: blue light signaling pathway	1.67E-02
135	GO:0030036: actin cytoskeleton organization	1.67E-02
136	GO:0010075: regulation of meristem growth	1.67E-02
137	GO:0009725: response to hormone	1.67E-02
138	GO:0009767: photosynthetic electron transport chain	1.67E-02
139	GO:0010114: response to red light	1.82E-02
140	GO:0006302: double-strand break repair	1.82E-02
141	GO:0048440: carpel development	1.82E-02
142	GO:0042546: cell wall biogenesis	1.90E-02
143	GO:0009664: plant-type cell wall organization	2.29E-02
144	GO:0030150: protein import into mitochondrial matrix	2.30E-02
145	GO:0007010: cytoskeleton organization	2.30E-02
146	GO:0051017: actin filament bundle assembly	2.30E-02
147	GO:0006289: nucleotide-excision repair	2.30E-02
148	GO:2000377: regulation of reactive oxygen species metabolic process	2.30E-02
149	GO:0005992: trehalose biosynthetic process	2.30E-02
150	GO:0019344: cysteine biosynthetic process	2.30E-02
151	GO:0009944: polarity specification of adaxial/abaxial axis	2.30E-02
152	GO:0010073: meristem maintenance	2.47E-02
153	GO:0006825: copper ion transport	2.47E-02
154	GO:0008299: isoprenoid biosynthetic process	2.47E-02
155	GO:0006418: tRNA aminoacylation for protein translation	2.47E-02
156	GO:0016998: cell wall macromolecule catabolic process	2.64E-02
157	GO:0015992: proton transport	2.64E-02
158	GO:0048511: rhythmic process	2.64E-02
159	GO:0010431: seed maturation	2.64E-02
160	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.82E-02
161	GO:0035428: hexose transmembrane transport	2.82E-02
162	GO:0006730: one-carbon metabolic process	2.82E-02
163	GO:0031348: negative regulation of defense response	2.82E-02
164	GO:0009814: defense response, incompatible interaction	2.82E-02
165	GO:0006096: glycolytic process	2.91E-02
166	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.00E-02
167	GO:0019722: calcium-mediated signaling	3.18E-02
168	GO:0009306: protein secretion	3.18E-02
169	GO:0010089: xylem development	3.18E-02
170	GO:0010584: pollen exine formation	3.18E-02
171	GO:0048443: stamen development	3.18E-02
172	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.37E-02
173	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.43E-02
174	GO:0008033: tRNA processing	3.56E-02
175	GO:0034220: ion transmembrane transport	3.56E-02
176	GO:0010087: phloem or xylem histogenesis	3.56E-02
177	GO:0010118: stomatal movement	3.56E-02
178	GO:0045489: pectin biosynthetic process	3.75E-02
179	GO:0010154: fruit development	3.75E-02
180	GO:0046323: glucose import	3.75E-02
181	GO:0010268: brassinosteroid homeostasis	3.75E-02
182	GO:0009958: positive gravitropism	3.75E-02
183	GO:0048544: recognition of pollen	3.95E-02
184	GO:0042752: regulation of circadian rhythm	3.95E-02
185	GO:0009646: response to absence of light	3.95E-02
186	GO:0008654: phospholipid biosynthetic process	4.15E-02
187	GO:0045892: negative regulation of transcription, DNA-templated	4.18E-02
188	GO:0016132: brassinosteroid biosynthetic process	4.36E-02
189	GO:0016032: viral process	4.57E-02
190	GO:0032502: developmental process	4.57E-02
191	GO:0009630: gravitropism	4.57E-02
192	GO:0010583: response to cyclopentenone	4.57E-02
193	GO:0010090: trichome morphogenesis	4.78E-02
194	GO:0006914: autophagy	4.99E-02
195	GO:0009828: plant-type cell wall loosening	4.99E-02
196	GO:0016125: sterol metabolic process	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
3	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
4	GO:0046905: phytoene synthase activity	0.00E+00
5	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0005048: signal sequence binding	0.00E+00
8	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
9	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
10	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
11	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
12	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
13	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	4.26E-04
14	GO:0004813: alanine-tRNA ligase activity	4.26E-04
15	GO:0005290: L-histidine transmembrane transporter activity	4.26E-04
16	GO:0004008: copper-exporting ATPase activity	4.26E-04
17	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	4.26E-04
18	GO:0051996: squalene synthase activity	4.26E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.26E-04
20	GO:0004830: tryptophan-tRNA ligase activity	4.26E-04
21	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	4.26E-04
22	GO:0003879: ATP phosphoribosyltransferase activity	4.26E-04
23	GO:0042834: peptidoglycan binding	4.26E-04
24	GO:0043022: ribosome binding	5.08E-04
25	GO:0004829: threonine-tRNA ligase activity	9.21E-04
26	GO:0000064: L-ornithine transmembrane transporter activity	9.21E-04
27	GO:0004412: homoserine dehydrogenase activity	9.21E-04
28	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	9.21E-04
29	GO:0048531: beta-1,3-galactosyltransferase activity	9.21E-04
30	GO:0050017: L-3-cyanoalanine synthase activity	9.21E-04
31	GO:0010291: carotene beta-ring hydroxylase activity	9.21E-04
32	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	9.21E-04
33	GO:0043425: bHLH transcription factor binding	9.21E-04
34	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	9.21E-04
35	GO:0004766: spermidine synthase activity	9.21E-04
36	GO:0045548: phenylalanine ammonia-lyase activity	1.50E-03
37	GO:0003913: DNA photolyase activity	1.50E-03
38	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.50E-03
39	GO:0004148: dihydrolipoyl dehydrogenase activity	1.50E-03
40	GO:0016805: dipeptidase activity	1.50E-03
41	GO:0070402: NADPH binding	1.50E-03
42	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.50E-03
43	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.72E-03
44	GO:0005096: GTPase activator activity	1.78E-03
45	GO:0009678: hydrogen-translocating pyrophosphatase activity	2.17E-03
46	GO:0016149: translation release factor activity, codon specific	2.17E-03
47	GO:0015181: arginine transmembrane transporter activity	2.17E-03
48	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.17E-03
49	GO:0009882: blue light photoreceptor activity	2.17E-03
50	GO:0004300: enoyl-CoA hydratase activity	2.17E-03
51	GO:0015189: L-lysine transmembrane transporter activity	2.17E-03
52	GO:0004072: aspartate kinase activity	2.17E-03
53	GO:0042277: peptide binding	2.91E-03
54	GO:0001053: plastid sigma factor activity	2.91E-03
55	GO:0016987: sigma factor activity	2.91E-03
56	GO:0070628: proteasome binding	2.91E-03
57	GO:0005525: GTP binding	3.22E-03
58	GO:0030570: pectate lyase activity	3.45E-03
59	GO:0003785: actin monomer binding	3.73E-03
60	GO:0005471: ATP:ADP antiporter activity	3.73E-03
61	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.73E-03
62	GO:0003924: GTPase activity	4.38E-03
63	GO:0004332: fructose-bisphosphate aldolase activity	4.61E-03
64	GO:0031593: polyubiquitin binding	4.61E-03
65	GO:0003690: double-stranded DNA binding	4.79E-03
66	GO:0004656: procollagen-proline 4-dioxygenase activity	5.57E-03
67	GO:0004124: cysteine synthase activity	5.57E-03
68	GO:0004017: adenylate kinase activity	5.57E-03
69	GO:0004518: nuclease activity	6.26E-03
70	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.31E-03
71	GO:0009881: photoreceptor activity	6.58E-03
72	GO:0004427: inorganic diphosphatase activity	6.58E-03
73	GO:0008312: 7S RNA binding	7.65E-03
74	GO:0016597: amino acid binding	8.01E-03
75	GO:0005375: copper ion transmembrane transporter activity	8.79E-03
76	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	8.79E-03
77	GO:0071949: FAD binding	9.98E-03
78	GO:0003747: translation release factor activity	9.98E-03
79	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.11E-02
80	GO:0030955: potassium ion binding	1.12E-02
81	GO:0004743: pyruvate kinase activity	1.12E-02
82	GO:0004805: trehalose-phosphatase activity	1.25E-02
83	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.32E-02
84	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.39E-02
85	GO:0004161: dimethylallyltranstransferase activity	1.39E-02
86	GO:0000049: tRNA binding	1.53E-02
87	GO:0008081: phosphoric diester hydrolase activity	1.67E-02
88	GO:0015266: protein channel activity	1.67E-02
89	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.67E-02
90	GO:0015095: magnesium ion transmembrane transporter activity	1.67E-02
91	GO:0031072: heat shock protein binding	1.67E-02
92	GO:0035091: phosphatidylinositol binding	1.97E-02
93	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.14E-02
94	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.14E-02
95	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.14E-02
96	GO:0003714: transcription corepressor activity	2.30E-02
97	GO:0031418: L-ascorbic acid binding	2.30E-02
98	GO:0043130: ubiquitin binding	2.30E-02
99	GO:0005528: FK506 binding	2.30E-02
100	GO:0003723: RNA binding	2.33E-02
101	GO:0051087: chaperone binding	2.47E-02
102	GO:0003727: single-stranded RNA binding	3.18E-02
103	GO:0004812: aminoacyl-tRNA ligase activity	3.37E-02
104	GO:0004527: exonuclease activity	3.75E-02
105	GO:0008536: Ran GTPase binding	3.75E-02
106	GO:0050662: coenzyme binding	3.95E-02
107	GO:0010181: FMN binding	3.95E-02
108	GO:0016853: isomerase activity	3.95E-02
109	GO:0005355: glucose transmembrane transporter activity	3.95E-02
110	GO:0019901: protein kinase binding	4.15E-02
111	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.36E-02
112	GO:0048038: quinone binding	4.36E-02
113	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.49E-02
114	GO:0016829: lyase activity	4.73E-02
115	GO:0051015: actin filament binding	4.78E-02
116	GO:0016791: phosphatase activity	4.99E-02
117	GO:0003684: damaged DNA binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.97E-18
2	GO:0009570: chloroplast stroma	7.47E-06
3	GO:0009574: preprophase band	1.19E-04
4	GO:0009535: chloroplast thylakoid membrane	2.25E-04
5	GO:0031969: chloroplast membrane	5.39E-04
6	GO:0016604: nuclear body	8.75E-04
7	GO:0080085: signal recognition particle, chloroplast targeting	9.21E-04
8	GO:0046658: anchored component of plasma membrane	1.14E-03
9	GO:0016605: PML body	1.50E-03
10	GO:0005578: proteinaceous extracellular matrix	1.52E-03
11	GO:0032432: actin filament bundle	2.17E-03
12	GO:0031225: anchored component of membrane	2.87E-03
13	GO:0030663: COPI-coated vesicle membrane	2.91E-03
14	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.91E-03
15	GO:0031209: SCAR complex	4.61E-03
16	GO:0009579: thylakoid	5.20E-03
17	GO:0042807: central vacuole	6.58E-03
18	GO:0031305: integral component of mitochondrial inner membrane	7.65E-03
19	GO:0030529: intracellular ribonucleoprotein complex	8.49E-03
20	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.79E-03
21	GO:0000326: protein storage vacuole	8.79E-03
22	GO:0009543: chloroplast thylakoid lumen	9.60E-03
23	GO:0005680: anaphase-promoting complex	9.98E-03
24	GO:0030125: clathrin vesicle coat	1.25E-02
25	GO:0005759: mitochondrial matrix	1.28E-02
26	GO:0005884: actin filament	1.39E-02
27	GO:0000311: plastid large ribosomal subunit	1.53E-02
28	GO:0005938: cell cortex	1.67E-02
29	GO:0031977: thylakoid lumen	1.68E-02
30	GO:0030176: integral component of endoplasmic reticulum membrane	1.98E-02
31	GO:0009536: plastid	2.14E-02
32	GO:0009505: plant-type cell wall	2.23E-02
33	GO:0042651: thylakoid membrane	2.47E-02
34	GO:0009654: photosystem II oxygen evolving complex	2.47E-02
35	GO:0009532: plastid stroma	2.64E-02
36	GO:0009941: chloroplast envelope	2.80E-02
37	GO:0015629: actin cytoskeleton	3.00E-02
38	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.18E-02
39	GO:0031965: nuclear membrane	4.15E-02
40	GO:0019898: extrinsic component of membrane	4.15E-02
41	GO:0010287: plastoglobule	4.15E-02
42	GO:0005886: plasma membrane	4.96E-02