Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G22590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009661: chromoplast organization0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0046471: phosphatidylglycerol metabolic process0.00E+00
5GO:0010207: photosystem II assembly4.00E-06
6GO:0010114: response to red light8.67E-06
7GO:0042549: photosystem II stabilization1.83E-05
8GO:0015979: photosynthesis3.73E-05
9GO:0046467: membrane lipid biosynthetic process8.78E-05
10GO:0015671: oxygen transport8.78E-05
11GO:0080051: cutin transport8.78E-05
12GO:0071277: cellular response to calcium ion8.78E-05
13GO:1904143: positive regulation of carotenoid biosynthetic process2.08E-04
14GO:0080029: cellular response to boron-containing substance levels2.08E-04
15GO:0015908: fatty acid transport2.08E-04
16GO:0034755: iron ion transmembrane transport2.08E-04
17GO:0071457: cellular response to ozone2.08E-04
18GO:0009768: photosynthesis, light harvesting in photosystem I2.99E-04
19GO:0090391: granum assembly3.48E-04
20GO:0005977: glycogen metabolic process3.48E-04
21GO:0009052: pentose-phosphate shunt, non-oxidative branch5.01E-04
22GO:0006168: adenine salvage5.01E-04
23GO:0046713: borate transport5.01E-04
24GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.01E-04
25GO:0006166: purine ribonucleoside salvage5.01E-04
26GO:0071484: cellular response to light intensity5.01E-04
27GO:0019252: starch biosynthetic process6.17E-04
28GO:0010021: amylopectin biosynthetic process6.66E-04
29GO:0010222: stem vascular tissue pattern formation6.66E-04
30GO:0071486: cellular response to high light intensity6.66E-04
31GO:0009765: photosynthesis, light harvesting6.66E-04
32GO:0015994: chlorophyll metabolic process6.66E-04
33GO:0032502: developmental process7.02E-04
34GO:0006564: L-serine biosynthetic process8.44E-04
35GO:0044209: AMP salvage8.44E-04
36GO:0006465: signal peptide processing8.44E-04
37GO:0071493: cellular response to UV-B8.44E-04
38GO:0016120: carotene biosynthetic process8.44E-04
39GO:0010190: cytochrome b6f complex assembly1.03E-03
40GO:0018298: protein-chromophore linkage1.21E-03
41GO:0010218: response to far red light1.32E-03
42GO:0009645: response to low light intensity stimulus1.44E-03
43GO:0009769: photosynthesis, light harvesting in photosystem II1.44E-03
44GO:0009637: response to blue light1.52E-03
45GO:0006810: transport1.53E-03
46GO:0009704: de-etiolation1.66E-03
47GO:0050821: protein stabilization1.66E-03
48GO:0052543: callose deposition in cell wall1.66E-03
49GO:0048564: photosystem I assembly1.66E-03
50GO:0042255: ribosome assembly1.66E-03
51GO:0006353: DNA-templated transcription, termination1.66E-03
52GO:0019430: removal of superoxide radicals1.89E-03
53GO:0009657: plastid organization1.89E-03
54GO:0009821: alkaloid biosynthetic process2.14E-03
55GO:0090333: regulation of stomatal closure2.14E-03
56GO:0006098: pentose-phosphate shunt2.14E-03
57GO:0019432: triglyceride biosynthetic process2.14E-03
58GO:0005982: starch metabolic process2.39E-03
59GO:0006535: cysteine biosynthetic process from serine2.65E-03
60GO:0006949: syncytium formation2.65E-03
61GO:0006879: cellular iron ion homeostasis2.93E-03
62GO:0009773: photosynthetic electron transport in photosystem I2.93E-03
63GO:0006094: gluconeogenesis3.50E-03
64GO:0010588: cotyledon vascular tissue pattern formation3.50E-03
65GO:0010143: cutin biosynthetic process3.80E-03
66GO:0006636: unsaturated fatty acid biosynthetic process4.42E-03
67GO:0019344: cysteine biosynthetic process4.74E-03
68GO:0019915: lipid storage5.42E-03
69GO:0009269: response to desiccation5.42E-03
70GO:0009735: response to cytokinin5.75E-03
71GO:0030433: ubiquitin-dependent ERAD pathway5.76E-03
72GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.12E-03
73GO:0000413: protein peptidyl-prolyl isomerization7.24E-03
74GO:0071472: cellular response to salt stress7.62E-03
75GO:0055114: oxidation-reduction process1.00E-02
76GO:0009828: plant-type cell wall loosening1.01E-02
77GO:0080167: response to karrikin1.22E-02
78GO:0042128: nitrate assimilation1.24E-02
79GO:0015995: chlorophyll biosynthetic process1.28E-02
80GO:0016311: dephosphorylation1.33E-02
81GO:0009817: defense response to fungus, incompatible interaction1.38E-02
82GO:0006869: lipid transport1.61E-02
83GO:0034599: cellular response to oxidative stress1.68E-02
84GO:0006631: fatty acid metabolic process1.84E-02
85GO:0000209: protein polyubiquitination2.01E-02
86GO:0009644: response to high light intensity2.06E-02
87GO:0009664: plant-type cell wall organization2.29E-02
88GO:0006417: regulation of translation2.60E-02
89GO:0006096: glycolytic process2.72E-02
90GO:0042545: cell wall modification3.04E-02
91GO:0006396: RNA processing3.17E-02
92GO:0009058: biosynthetic process3.78E-02
93GO:0045490: pectin catabolic process4.58E-02
94GO:0009739: response to gibberellin4.95E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
3GO:0015168: glycerol transmembrane transporter activity8.78E-05
4GO:0015245: fatty acid transporter activity8.78E-05
5GO:0005344: oxygen transporter activity8.78E-05
6GO:0019172: glyoxalase III activity2.08E-04
7GO:0019156: isoamylase activity2.08E-04
8GO:0047746: chlorophyllase activity2.08E-04
9GO:0004617: phosphoglycerate dehydrogenase activity2.08E-04
10GO:0033201: alpha-1,4-glucan synthase activity2.08E-04
11GO:0031409: pigment binding2.42E-04
12GO:0004751: ribose-5-phosphate isomerase activity3.48E-04
13GO:0004373: glycogen (starch) synthase activity3.48E-04
14GO:0050734: hydroxycinnamoyltransferase activity3.48E-04
15GO:0003727: single-stranded RNA binding4.27E-04
16GO:0003999: adenine phosphoribosyltransferase activity5.01E-04
17GO:0046715: borate transmembrane transporter activity5.01E-04
18GO:0001872: (1->3)-beta-D-glucan binding5.01E-04
19GO:0016851: magnesium chelatase activity5.01E-04
20GO:0009011: starch synthase activity6.66E-04
21GO:0015204: urea transmembrane transporter activity6.66E-04
22GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.66E-04
23GO:0016168: chlorophyll binding9.88E-04
24GO:0004556: alpha-amylase activity1.03E-03
25GO:0004462: lactoylglutathione lyase activity1.03E-03
26GO:0004332: fructose-bisphosphate aldolase activity1.03E-03
27GO:0004784: superoxide dismutase activity1.03E-03
28GO:0004124: cysteine synthase activity1.23E-03
29GO:0051537: 2 iron, 2 sulfur cluster binding2.10E-03
30GO:0016844: strictosidine synthase activity2.39E-03
31GO:0005381: iron ion transmembrane transporter activity2.39E-03
32GO:0004022: alcohol dehydrogenase (NAD) activity3.50E-03
33GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.80E-03
34GO:0048038: quinone binding8.83E-03
35GO:0016788: hydrolase activity, acting on ester bonds1.00E-02
36GO:0016597: amino acid binding1.10E-02
37GO:0015250: water channel activity1.14E-02
38GO:0030247: polysaccharide binding1.28E-02
39GO:0003993: acid phosphatase activity1.68E-02
40GO:0005215: transporter activity1.79E-02
41GO:0009055: electron carrier activity1.94E-02
42GO:0043621: protein self-association2.06E-02
43GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.18E-02
44GO:0051287: NAD binding2.24E-02
45GO:0003690: double-stranded DNA binding2.47E-02
46GO:0008289: lipid binding2.52E-02
47GO:0031625: ubiquitin protein ligase binding2.60E-02
48GO:0045330: aspartyl esterase activity2.60E-02
49GO:0030599: pectinesterase activity2.97E-02
50GO:0019843: rRNA binding3.64E-02
51GO:0016787: hydrolase activity4.08E-02
52GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.22E-02
53GO:0005507: copper ion binding4.55E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.46E-15
2GO:0009535: chloroplast thylakoid membrane3.50E-08
3GO:0009579: thylakoid2.55E-07
4GO:0009941: chloroplast envelope1.36E-06
5GO:0031977: thylakoid lumen7.31E-06
6GO:0009522: photosystem I2.63E-05
7GO:0009543: chloroplast thylakoid lumen5.06E-05
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.31E-05
9GO:0005787: signal peptidase complex8.78E-05
10GO:0009570: chloroplast stroma1.76E-04
11GO:0030076: light-harvesting complex2.16E-04
12GO:0009654: photosystem II oxygen evolving complex2.99E-04
13GO:0009534: chloroplast thylakoid3.10E-04
14GO:0009897: external side of plasma membrane3.48E-04
15GO:0010007: magnesium chelatase complex3.48E-04
16GO:0010287: plastoglobule5.31E-04
17GO:0009523: photosystem II6.17E-04
18GO:0009517: PSII associated light-harvesting complex II6.66E-04
19GO:0009501: amyloplast1.66E-03
20GO:0009539: photosystem II reaction center1.89E-03
21GO:0031969: chloroplast membrane1.90E-03
22GO:0009508: plastid chromosome3.50E-03
23GO:0030095: chloroplast photosystem II3.80E-03
24GO:0019898: extrinsic component of membrane8.42E-03
25GO:0009295: nucleoid1.05E-02
26GO:0016021: integral component of membrane2.96E-02
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Gene type



Gene DE type