co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G21880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006573: valine metabolic process	0.00E+00
2	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
3	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
4	GO:0061157: mRNA destabilization	0.00E+00
5	GO:2000469: negative regulation of peroxidase activity	0.00E+00
6	GO:0009733: response to auxin	1.05E-05
7	GO:0009082: branched-chain amino acid biosynthetic process	7.58E-05
8	GO:0009099: valine biosynthetic process	7.58E-05
9	GO:0010305: leaf vascular tissue pattern formation	9.50E-05
10	GO:0030307: positive regulation of cell growth	1.01E-04
11	GO:0048437: floral organ development	1.01E-04
12	GO:0046620: regulation of organ growth	1.30E-04
13	GO:0009734: auxin-activated signaling pathway	1.46E-04
14	GO:0009097: isoleucine biosynthetic process	1.62E-04
15	GO:0010063: positive regulation of trichoblast fate specification	1.71E-04
16	GO:0010480: microsporocyte differentiation	1.71E-04
17	GO:0006551: leucine metabolic process	1.71E-04
18	GO:0051247: positive regulation of protein metabolic process	1.71E-04
19	GO:0015904: tetracycline transport	1.71E-04
20	GO:2000905: negative regulation of starch metabolic process	1.71E-04
21	GO:0000025: maltose catabolic process	1.71E-04
22	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.71E-04
23	GO:1900865: chloroplast RNA modification	2.37E-04
24	GO:1900871: chloroplast mRNA modification	3.87E-04
25	GO:1900033: negative regulation of trichome patterning	3.87E-04
26	GO:0006568: tryptophan metabolic process	3.87E-04
27	GO:0015824: proline transport	3.87E-04
28	GO:0040008: regulation of growth	3.98E-04
29	GO:0006006: glucose metabolic process	4.24E-04
30	GO:0048586: regulation of long-day photoperiodism, flowering	6.32E-04
31	GO:0090153: regulation of sphingolipid biosynthetic process	6.32E-04
32	GO:0071398: cellular response to fatty acid	6.32E-04
33	GO:0033591: response to L-ascorbic acid	6.32E-04
34	GO:0016556: mRNA modification	9.04E-04
35	GO:0010306: rhamnogalacturonan II biosynthetic process	9.04E-04
36	GO:0010071: root meristem specification	9.04E-04
37	GO:0009416: response to light stimulus	1.14E-03
38	GO:0048629: trichome patterning	1.20E-03
39	GO:0042274: ribosomal small subunit biogenesis	1.20E-03
40	GO:2000306: positive regulation of photomorphogenesis	1.20E-03
41	GO:0010363: regulation of plant-type hypersensitive response	1.20E-03
42	GO:0006221: pyrimidine nucleotide biosynthetic process	1.20E-03
43	GO:0048868: pollen tube development	1.28E-03
44	GO:0016131: brassinosteroid metabolic process	1.52E-03
45	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.87E-03
46	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.87E-03
47	GO:0010405: arabinogalactan protein metabolic process	1.87E-03
48	GO:0009959: negative gravitropism	1.87E-03
49	GO:0016554: cytidine to uridine editing	1.87E-03
50	GO:0006458: 'de novo' protein folding	2.24E-03
51	GO:0030488: tRNA methylation	2.24E-03
52	GO:0080086: stamen filament development	2.24E-03
53	GO:0009955: adaxial/abaxial pattern specification	2.24E-03
54	GO:0042026: protein refolding	2.24E-03
55	GO:0010029: regulation of seed germination	2.39E-03
56	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.64E-03
57	GO:0010161: red light signaling pathway	2.64E-03
58	GO:0010100: negative regulation of photomorphogenesis	3.50E-03
59	GO:0010099: regulation of photomorphogenesis	3.50E-03
60	GO:0015996: chlorophyll catabolic process	3.50E-03
61	GO:0006865: amino acid transport	3.55E-03
62	GO:0048507: meristem development	3.95E-03
63	GO:0006783: heme biosynthetic process	3.95E-03
64	GO:0000373: Group II intron splicing	3.95E-03
65	GO:0000902: cell morphogenesis	3.95E-03
66	GO:0009051: pentose-phosphate shunt, oxidative branch	3.95E-03
67	GO:0031425: chloroplast RNA processing	4.44E-03
68	GO:0043067: regulation of programmed cell death	4.44E-03
69	GO:0009098: leucine biosynthetic process	4.44E-03
70	GO:0009926: auxin polar transport	4.78E-03
71	GO:0016441: posttranscriptional gene silencing	4.93E-03
72	GO:0048229: gametophyte development	5.45E-03
73	GO:0000038: very long-chain fatty acid metabolic process	5.45E-03
74	GO:0009773: photosynthetic electron transport in photosystem I	5.45E-03
75	GO:0048366: leaf development	5.68E-03
76	GO:0005983: starch catabolic process	5.98E-03
77	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.33E-03
78	GO:0010628: positive regulation of gene expression	6.54E-03
79	GO:0010075: regulation of meristem growth	6.54E-03
80	GO:0010588: cotyledon vascular tissue pattern formation	6.54E-03
81	GO:2000012: regulation of auxin polar transport	6.54E-03
82	GO:0009934: regulation of meristem structural organization	7.11E-03
83	GO:0010030: positive regulation of seed germination	7.69E-03
84	GO:0070588: calcium ion transmembrane transport	7.69E-03
85	GO:0048367: shoot system development	7.86E-03
86	GO:0019762: glucosinolate catabolic process	8.30E-03
87	GO:0009740: gibberellic acid mediated signaling pathway	8.63E-03
88	GO:0010187: negative regulation of seed germination	8.92E-03
89	GO:0080147: root hair cell development	8.92E-03
90	GO:0005992: trehalose biosynthetic process	8.92E-03
91	GO:0061077: chaperone-mediated protein folding	1.02E-02
92	GO:0009814: defense response, incompatible interaction	1.09E-02
93	GO:0009686: gibberellin biosynthetic process	1.16E-02
94	GO:0009693: ethylene biosynthetic process	1.16E-02
95	GO:0042127: regulation of cell proliferation	1.23E-02
96	GO:0007275: multicellular organism development	1.28E-02
97	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.30E-02
98	GO:0042335: cuticle development	1.37E-02
99	GO:0080022: primary root development	1.37E-02
100	GO:0010087: phloem or xylem histogenesis	1.37E-02
101	GO:0048653: anther development	1.37E-02
102	GO:0042631: cellular response to water deprivation	1.37E-02
103	GO:0009741: response to brassinosteroid	1.45E-02
104	GO:0010268: brassinosteroid homeostasis	1.45E-02
105	GO:0009646: response to absence of light	1.52E-02
106	GO:0010150: leaf senescence	1.59E-02
107	GO:0009451: RNA modification	1.63E-02
108	GO:0010583: response to cyclopentenone	1.76E-02
109	GO:1901657: glycosyl compound metabolic process	1.84E-02
110	GO:0010252: auxin homeostasis	1.93E-02
111	GO:0006464: cellular protein modification process	1.93E-02
112	GO:0015995: chlorophyll biosynthetic process	2.45E-02
113	GO:0009658: chloroplast organization	2.46E-02
114	GO:0048481: plant ovule development	2.64E-02
115	GO:0006508: proteolysis	2.73E-02
116	GO:0048527: lateral root development	2.93E-02
117	GO:0009910: negative regulation of flower development	2.93E-02
118	GO:0006631: fatty acid metabolic process	3.53E-02
119	GO:0009640: photomorphogenesis	3.74E-02
120	GO:0008283: cell proliferation	3.74E-02
121	GO:0008643: carbohydrate transport	3.96E-02
122	GO:0006855: drug transmembrane transport	4.17E-02
123	GO:0006397: mRNA processing	4.68E-02
124	GO:0009753: response to jasmonic acid	4.81E-02
125	GO:0006857: oligopeptide transport	4.85E-02
126	GO:0009909: regulation of flower development	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
2	GO:0010313: phytochrome binding	1.71E-04
3	GO:0004134: 4-alpha-glucanotransferase activity	1.71E-04
4	GO:0003984: acetolactate synthase activity	1.71E-04
5	GO:0008158: hedgehog receptor activity	1.71E-04
6	GO:0008395: steroid hydroxylase activity	1.71E-04
7	GO:0050139: nicotinate-N-glucosyltransferase activity	1.71E-04
8	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.71E-04
9	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.71E-04
10	GO:0017118: lipoyltransferase activity	3.87E-04
11	GO:0008493: tetracycline transporter activity	3.87E-04
12	GO:0015193: L-proline transmembrane transporter activity	6.32E-04
13	GO:0016805: dipeptidase activity	6.32E-04
14	GO:0004180: carboxypeptidase activity	6.32E-04
15	GO:0005528: FK506 binding	6.60E-04
16	GO:0009041: uridylate kinase activity	9.04E-04
17	GO:0052656: L-isoleucine transaminase activity	9.04E-04
18	GO:0052654: L-leucine transaminase activity	9.04E-04
19	GO:0052655: L-valine transaminase activity	9.04E-04
20	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.20E-03
21	GO:0004084: branched-chain-amino-acid transaminase activity	1.20E-03
22	GO:0005275: amine transmembrane transporter activity	1.52E-03
23	GO:0035673: oligopeptide transmembrane transporter activity	1.87E-03
24	GO:0004462: lactoylglutathione lyase activity	1.87E-03
25	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	1.87E-03
26	GO:0080030: methyl indole-3-acetate esterase activity	1.87E-03
27	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.87E-03
28	GO:0008195: phosphatidate phosphatase activity	2.24E-03
29	GO:0004519: endonuclease activity	2.36E-03
30	GO:0008173: RNA methyltransferase activity	3.50E-03
31	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.95E-03
32	GO:0004805: trehalose-phosphatase activity	4.93E-03
33	GO:0030234: enzyme regulator activity	4.93E-03
34	GO:0044183: protein binding involved in protein folding	5.45E-03
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.57E-03
36	GO:0000976: transcription regulatory region sequence-specific DNA binding	5.98E-03
37	GO:0015198: oligopeptide transporter activity	5.98E-03
38	GO:0005262: calcium channel activity	6.54E-03
39	GO:0015171: amino acid transmembrane transporter activity	7.12E-03
40	GO:0008146: sulfotransferase activity	7.69E-03
41	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.30E-03
42	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.30E-03
43	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.30E-03
44	GO:0031418: L-ascorbic acid binding	8.92E-03
45	GO:0005345: purine nucleobase transmembrane transporter activity	9.56E-03
46	GO:0033612: receptor serine/threonine kinase binding	1.02E-02
47	GO:0003964: RNA-directed DNA polymerase activity	1.02E-02
48	GO:0003727: single-stranded RNA binding	1.23E-02
49	GO:0008514: organic anion transmembrane transporter activity	1.23E-02
50	GO:0003713: transcription coactivator activity	1.45E-02
51	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.01E-02
52	GO:0016597: amino acid binding	2.10E-02
53	GO:0102483: scopolin beta-glucosidase activity	2.45E-02
54	GO:0016788: hydrolase activity, acting on ester bonds	2.51E-02
55	GO:0015238: drug transmembrane transporter activity	2.73E-02
56	GO:0004222: metalloendopeptidase activity	2.83E-02
57	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.93E-02
58	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.12E-02
59	GO:0003993: acid phosphatase activity	3.22E-02
60	GO:0008422: beta-glucosidase activity	3.33E-02
61	GO:0050661: NADP binding	3.43E-02
62	GO:0003777: microtubule motor activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0019897: extrinsic component of plasma membrane	6.32E-04
3	GO:0009507: chloroplast	1.26E-03
4	GO:0009543: chloroplast thylakoid lumen	1.76E-03
5	GO:0009501: amyloplast	3.06E-03
6	GO:0010494: cytoplasmic stress granule	3.95E-03
7	GO:0009508: plastid chromosome	6.54E-03
8	GO:0030095: chloroplast photosystem II	7.11E-03
9	GO:0009654: photosystem II oxygen evolving complex	9.56E-03
10	GO:0043231: intracellular membrane-bounded organelle	1.13E-02
11	GO:0019898: extrinsic component of membrane	1.60E-02
12	GO:0009295: nucleoid	2.01E-02
13	GO:0000932: P-body	2.18E-02
14	GO:0031969: chloroplast membrane	3.05E-02
15	GO:0031977: thylakoid lumen	3.53E-02
16	GO:0009570: chloroplast stroma	3.94E-02
17	GO:0009535: chloroplast thylakoid membrane	4.71E-02