co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G19715

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
2	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
3	GO:0090279: regulation of calcium ion import	0.00E+00
4	GO:0015882: L-ascorbic acid transport	0.00E+00
5	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
6	GO:0008298: intracellular mRNA localization	0.00E+00
7	GO:0071474: cellular hyperosmotic response	0.00E+00
8	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
9	GO:0043488: regulation of mRNA stability	0.00E+00
10	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
11	GO:0009658: chloroplast organization	7.61E-09
12	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.06E-06
13	GO:0000256: allantoin catabolic process	2.06E-06
14	GO:0010136: ureide catabolic process	7.54E-06
15	GO:0005977: glycogen metabolic process	7.54E-06
16	GO:0006145: purine nucleobase catabolic process	1.73E-05
17	GO:0010239: chloroplast mRNA processing	1.73E-05
18	GO:0010027: thylakoid membrane organization	2.08E-05
19	GO:0010021: amylopectin biosynthetic process	3.17E-05
20	GO:0009416: response to light stimulus	8.63E-05
21	GO:1901259: chloroplast rRNA processing	1.04E-04
22	GO:0019252: starch biosynthetic process	1.75E-04
23	GO:0000967: rRNA 5'-end processing	2.09E-04
24	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	2.09E-04
25	GO:0031426: polycistronic mRNA processing	2.09E-04
26	GO:0006637: acyl-CoA metabolic process	2.09E-04
27	GO:0043953: protein transport by the Tat complex	2.09E-04
28	GO:1904966: positive regulation of vitamin E biosynthetic process	2.09E-04
29	GO:0043266: regulation of potassium ion transport	2.09E-04
30	GO:0051775: response to redox state	2.09E-04
31	GO:0010063: positive regulation of trichoblast fate specification	2.09E-04
32	GO:1904964: positive regulation of phytol biosynthetic process	2.09E-04
33	GO:0065002: intracellular protein transmembrane transport	2.09E-04
34	GO:2000021: regulation of ion homeostasis	2.09E-04
35	GO:0070574: cadmium ion transmembrane transport	2.09E-04
36	GO:0010028: xanthophyll cycle	2.09E-04
37	GO:0000305: response to oxygen radical	2.09E-04
38	GO:0006419: alanyl-tRNA aminoacylation	2.09E-04
39	GO:0000476: maturation of 4.5S rRNA	2.09E-04
40	GO:0009657: plastid organization	2.19E-04
41	GO:1900871: chloroplast mRNA modification	4.66E-04
42	GO:0006432: phenylalanyl-tRNA aminoacylation	4.66E-04
43	GO:1904143: positive regulation of carotenoid biosynthetic process	4.66E-04
44	GO:0051262: protein tetramerization	4.66E-04
45	GO:0034470: ncRNA processing	4.66E-04
46	GO:0060359: response to ammonium ion	4.66E-04
47	GO:0019853: L-ascorbic acid biosynthetic process	7.02E-04
48	GO:0006954: inflammatory response	7.59E-04
49	GO:0034051: negative regulation of plant-type hypersensitive response	7.59E-04
50	GO:0015940: pantothenate biosynthetic process	7.59E-04
51	GO:0090153: regulation of sphingolipid biosynthetic process	7.59E-04
52	GO:0043157: response to cation stress	7.59E-04
53	GO:0033014: tetrapyrrole biosynthetic process	1.08E-03
54	GO:0009226: nucleotide-sugar biosynthetic process	1.08E-03
55	GO:0051016: barbed-end actin filament capping	1.08E-03
56	GO:0006164: purine nucleotide biosynthetic process	1.08E-03
57	GO:0031048: chromatin silencing by small RNA	1.08E-03
58	GO:0016556: mRNA modification	1.08E-03
59	GO:0090308: regulation of methylation-dependent chromatin silencing	1.08E-03
60	GO:0010071: root meristem specification	1.08E-03
61	GO:0009152: purine ribonucleotide biosynthetic process	1.08E-03
62	GO:0046653: tetrahydrofolate metabolic process	1.08E-03
63	GO:0006107: oxaloacetate metabolic process	1.08E-03
64	GO:0019048: modulation by virus of host morphology or physiology	1.08E-03
65	GO:0005975: carbohydrate metabolic process	1.24E-03
66	GO:0051567: histone H3-K9 methylation	1.44E-03
67	GO:0006021: inositol biosynthetic process	1.44E-03
68	GO:0006749: glutathione metabolic process	1.44E-03
69	GO:0006734: NADH metabolic process	1.44E-03
70	GO:0032543: mitochondrial translation	1.83E-03
71	GO:0045038: protein import into chloroplast thylakoid membrane	1.83E-03
72	GO:0080110: sporopollenin biosynthetic process	1.83E-03
73	GO:0032502: developmental process	2.21E-03
74	GO:0032973: amino acid export	2.26E-03
75	GO:0000741: karyogamy	2.26E-03
76	GO:0046855: inositol phosphate dephosphorylation	2.26E-03
77	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.26E-03
78	GO:0016458: gene silencing	2.26E-03
79	GO:0050665: hydrogen peroxide biosynthetic process	2.26E-03
80	GO:0009959: negative gravitropism	2.26E-03
81	GO:0048280: vesicle fusion with Golgi apparatus	2.71E-03
82	GO:0009854: oxidative photosynthetic carbon pathway	2.71E-03
83	GO:0006400: tRNA modification	3.20E-03
84	GO:0043090: amino acid import	3.20E-03
85	GO:0051693: actin filament capping	3.20E-03
86	GO:0048437: floral organ development	3.20E-03
87	GO:0009690: cytokinin metabolic process	3.71E-03
88	GO:0006875: cellular metal ion homeostasis	3.71E-03
89	GO:0010078: maintenance of root meristem identity	3.71E-03
90	GO:0048564: photosystem I assembly	3.71E-03
91	GO:0009451: RNA modification	3.90E-03
92	GO:0010204: defense response signaling pathway, resistance gene-independent	4.24E-03
93	GO:0032544: plastid translation	4.24E-03
94	GO:0043562: cellular response to nitrogen levels	4.24E-03
95	GO:0017004: cytochrome complex assembly	4.24E-03
96	GO:0080144: amino acid homeostasis	4.80E-03
97	GO:0048507: meristem development	4.80E-03
98	GO:0006783: heme biosynthetic process	4.80E-03
99	GO:0000902: cell morphogenesis	4.80E-03
100	GO:0098656: anion transmembrane transport	4.80E-03
101	GO:0006779: porphyrin-containing compound biosynthetic process	5.38E-03
102	GO:0006896: Golgi to vacuole transport	5.99E-03
103	GO:0006995: cellular response to nitrogen starvation	5.99E-03
104	GO:0030422: production of siRNA involved in RNA interference	5.99E-03
105	GO:0019684: photosynthesis, light reaction	6.62E-03
106	GO:0009773: photosynthetic electron transport in photosystem I	6.62E-03
107	GO:0009089: lysine biosynthetic process via diaminopimelate	6.62E-03
108	GO:0006415: translational termination	6.62E-03
109	GO:0010216: maintenance of DNA methylation	6.62E-03
110	GO:0009684: indoleacetic acid biosynthetic process	6.62E-03
111	GO:0006790: sulfur compound metabolic process	7.28E-03
112	GO:0010628: positive regulation of gene expression	7.96E-03
113	GO:0006108: malate metabolic process	7.96E-03
114	GO:0030036: actin cytoskeleton organization	7.96E-03
115	GO:0009718: anthocyanin-containing compound biosynthetic process	7.96E-03
116	GO:0010588: cotyledon vascular tissue pattern formation	7.96E-03
117	GO:0010207: photosystem II assembly	8.66E-03
118	GO:0010020: chloroplast fission	8.66E-03
119	GO:0007015: actin filament organization	8.66E-03
120	GO:0048467: gynoecium development	8.66E-03
121	GO:0006857: oligopeptide transport	9.14E-03
122	GO:0010030: positive regulation of seed germination	9.37E-03
123	GO:0046854: phosphatidylinositol phosphorylation	9.37E-03
124	GO:0009793: embryo development ending in seed dormancy	9.46E-03
125	GO:0048367: shoot system development	1.04E-02
126	GO:0055085: transmembrane transport	1.09E-02
127	GO:0007017: microtubule-based process	1.17E-02
128	GO:0006418: tRNA aminoacylation for protein translation	1.17E-02
129	GO:0006874: cellular calcium ion homeostasis	1.17E-02
130	GO:0019915: lipid storage	1.25E-02
131	GO:0006306: DNA methylation	1.25E-02
132	GO:0019748: secondary metabolic process	1.33E-02
133	GO:0009686: gibberellin biosynthetic process	1.41E-02
134	GO:0006012: galactose metabolic process	1.41E-02
135	GO:0042127: regulation of cell proliferation	1.50E-02
136	GO:0010584: pollen exine formation	1.50E-02
137	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.59E-02
138	GO:0042147: retrograde transport, endosome to Golgi	1.59E-02
139	GO:0080022: primary root development	1.68E-02
140	GO:0010087: phloem or xylem histogenesis	1.68E-02
141	GO:0042631: cellular response to water deprivation	1.68E-02
142	GO:0010305: leaf vascular tissue pattern formation	1.77E-02
143	GO:0010197: polar nucleus fusion	1.77E-02
144	GO:0048868: pollen tube development	1.77E-02
145	GO:0006342: chromatin silencing	1.77E-02
146	GO:0009741: response to brassinosteroid	1.77E-02
147	GO:0010268: brassinosteroid homeostasis	1.77E-02
148	GO:0009958: positive gravitropism	1.77E-02
149	GO:0009646: response to absence of light	1.86E-02
150	GO:0009791: post-embryonic development	1.96E-02
151	GO:0048825: cotyledon development	1.96E-02
152	GO:0055072: iron ion homeostasis	1.96E-02
153	GO:0009851: auxin biosynthetic process	1.96E-02
154	GO:0006623: protein targeting to vacuole	1.96E-02
155	GO:0006413: translational initiation	1.97E-02
156	GO:0006891: intra-Golgi vesicle-mediated transport	2.06E-02
157	GO:0016132: brassinosteroid biosynthetic process	2.06E-02
158	GO:0009630: gravitropism	2.15E-02
159	GO:1901657: glycosyl compound metabolic process	2.25E-02
160	GO:0009567: double fertilization forming a zygote and endosperm	2.36E-02
161	GO:0016125: sterol metabolic process	2.36E-02
162	GO:0008380: RNA splicing	2.52E-02
163	GO:0051607: defense response to virus	2.57E-02
164	GO:0009816: defense response to bacterium, incompatible interaction	2.78E-02
165	GO:0015995: chlorophyll biosynthetic process	3.00E-02
166	GO:0006888: ER to Golgi vesicle-mediated transport	3.00E-02
167	GO:0016311: dephosphorylation	3.11E-02
168	GO:0048481: plant ovule development	3.23E-02
169	GO:0018298: protein-chromophore linkage	3.23E-02
170	GO:0009409: response to cold	3.44E-02
171	GO:0006811: ion transport	3.46E-02
172	GO:0006970: response to osmotic stress	3.52E-02
173	GO:0048527: lateral root development	3.58E-02
174	GO:0006865: amino acid transport	3.70E-02
175	GO:0009723: response to ethylene	3.78E-02
176	GO:0009853: photorespiration	3.82E-02
177	GO:0006099: tricarboxylic acid cycle	3.94E-02
178	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.18E-02
179	GO:0030001: metal ion transport	4.19E-02
180	GO:0006839: mitochondrial transport	4.19E-02
181	GO:0006508: proteolysis	4.36E-02
182	GO:0051707: response to other organism	4.57E-02
183	GO:0009644: response to high light intensity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity	0.00E+00
2	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
3	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
4	GO:0004823: leucine-tRNA ligase activity	0.00E+00
5	GO:0003937: IMP cyclohydrolase activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
8	GO:0004038: allantoinase activity	0.00E+00
9	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
10	GO:0019156: isoamylase activity	2.06E-06
11	GO:0004556: alpha-amylase activity	7.50E-05
12	GO:0051777: ent-kaurenoate oxidase activity	2.09E-04
13	GO:0004813: alanine-tRNA ligase activity	2.09E-04
14	GO:0004325: ferrochelatase activity	2.09E-04
15	GO:0008158: hedgehog receptor activity	2.09E-04
16	GO:0008746: NAD(P)+ transhydrogenase activity	2.09E-04
17	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.09E-04
18	GO:0005227: calcium activated cation channel activity	2.09E-04
19	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	2.09E-04
20	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.09E-04
21	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.09E-04
22	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.66E-04
23	GO:0008934: inositol monophosphate 1-phosphatase activity	4.66E-04
24	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	4.66E-04
25	GO:0052833: inositol monophosphate 4-phosphatase activity	4.66E-04
26	GO:0004826: phenylalanine-tRNA ligase activity	4.66E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.66E-04
28	GO:0004362: glutathione-disulfide reductase activity	4.66E-04
29	GO:0080041: ADP-ribose pyrophosphohydrolase activity	4.66E-04
30	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	4.66E-04
31	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.66E-04
32	GO:0052832: inositol monophosphate 3-phosphatase activity	4.66E-04
33	GO:0000049: tRNA binding	4.92E-04
34	GO:0003993: acid phosphatase activity	6.47E-04
35	GO:0003913: DNA photolyase activity	7.59E-04
36	GO:0002161: aminoacyl-tRNA editing activity	7.59E-04
37	GO:0004848: ureidoglycolate hydrolase activity	7.59E-04
38	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	7.59E-04
39	GO:0008864: formyltetrahydrofolate deformylase activity	7.59E-04
40	GO:0015086: cadmium ion transmembrane transporter activity	1.08E-03
41	GO:0035197: siRNA binding	1.08E-03
42	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.08E-03
43	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.08E-03
44	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.08E-03
45	GO:0048027: mRNA 5'-UTR binding	1.08E-03
46	GO:0009011: starch synthase activity	1.44E-03
47	GO:0043495: protein anchor	1.44E-03
48	GO:0008891: glycolate oxidase activity	1.44E-03
49	GO:0004045: aminoacyl-tRNA hydrolase activity	1.44E-03
50	GO:0080032: methyl jasmonate esterase activity	1.44E-03
51	GO:0005275: amine transmembrane transporter activity	1.83E-03
52	GO:0016846: carbon-sulfur lyase activity	1.83E-03
53	GO:0035673: oligopeptide transmembrane transporter activity	2.26E-03
54	GO:0004462: lactoylglutathione lyase activity	2.26E-03
55	GO:0042578: phosphoric ester hydrolase activity	2.26E-03
56	GO:0016615: malate dehydrogenase activity	2.26E-03
57	GO:0008200: ion channel inhibitor activity	2.26E-03
58	GO:0080030: methyl indole-3-acetate esterase activity	2.26E-03
59	GO:0030060: L-malate dehydrogenase activity	2.71E-03
60	GO:0005261: cation channel activity	2.71E-03
61	GO:0003730: mRNA 3'-UTR binding	2.71E-03
62	GO:0008195: phosphatidate phosphatase activity	2.71E-03
63	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.71E-03
64	GO:0019899: enzyme binding	3.20E-03
65	GO:0015103: inorganic anion transmembrane transporter activity	3.20E-03
66	GO:0004519: endonuclease activity	3.62E-03
67	GO:0004033: aldo-keto reductase (NADP) activity	3.71E-03
68	GO:0004222: metalloendopeptidase activity	4.28E-03
69	GO:0005525: GTP binding	4.50E-03
70	GO:0003747: translation release factor activity	4.80E-03
71	GO:0047617: acyl-CoA hydrolase activity	5.38E-03
72	GO:0004185: serine-type carboxypeptidase activity	6.33E-03
73	GO:0008559: xenobiotic-transporting ATPase activity	6.62E-03
74	GO:0016788: hydrolase activity, acting on ester bonds	6.77E-03
75	GO:0003723: RNA binding	7.14E-03
76	GO:0015198: oligopeptide transporter activity	7.28E-03
77	GO:0004521: endoribonuclease activity	7.28E-03
78	GO:0003824: catalytic activity	7.61E-03
79	GO:0005315: inorganic phosphate transmembrane transporter activity	7.96E-03
80	GO:0009982: pseudouridine synthase activity	7.96E-03
81	GO:0004970: ionotropic glutamate receptor activity	9.37E-03
82	GO:0005217: intracellular ligand-gated ion channel activity	9.37E-03
83	GO:0015171: amino acid transmembrane transporter activity	9.46E-03
84	GO:0052689: carboxylic ester hydrolase activity	9.88E-03
85	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.04E-02
86	GO:0005216: ion channel activity	1.17E-02
87	GO:0022891: substrate-specific transmembrane transporter activity	1.41E-02
88	GO:0003924: GTPase activity	1.43E-02
89	GO:0008514: organic anion transmembrane transporter activity	1.50E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	1.59E-02
91	GO:0046873: metal ion transmembrane transporter activity	1.77E-02
92	GO:0008080: N-acetyltransferase activity	1.77E-02
93	GO:0050662: coenzyme binding	1.86E-02
94	GO:0010181: FMN binding	1.86E-02
95	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.46E-02
96	GO:0008237: metallopeptidase activity	2.46E-02
97	GO:0005200: structural constituent of cytoskeleton	2.46E-02
98	GO:0003743: translation initiation factor activity	2.47E-02
99	GO:0016597: amino acid binding	2.57E-02
100	GO:0042802: identical protein binding	2.68E-02
101	GO:0016168: chlorophyll binding	2.78E-02
102	GO:0004721: phosphoprotein phosphatase activity	3.00E-02
103	GO:0102483: scopolin beta-glucosidase activity	3.00E-02
104	GO:0015238: drug transmembrane transporter activity	3.34E-02
105	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.58E-02
106	GO:0050897: cobalt ion binding	3.58E-02
107	GO:0050660: flavin adenine dinucleotide binding	3.78E-02
108	GO:0008422: beta-glucosidase activity	4.07E-02
109	GO:0000149: SNARE binding	4.07E-02
110	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.07E-02
111	GO:0050661: NADP binding	4.19E-02
112	GO:0005484: SNAP receptor activity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	5.12E-19
4	GO:0009570: chloroplast stroma	3.07E-10
5	GO:0031361: integral component of thylakoid membrane	2.09E-04
6	GO:0042644: chloroplast nucleoid	2.65E-04
7	GO:0009706: chloroplast inner membrane	2.80E-04
8	GO:0031969: chloroplast membrane	3.42E-04
9	GO:0080085: signal recognition particle, chloroplast targeting	4.66E-04
10	GO:0008290: F-actin capping protein complex	4.66E-04
11	GO:0033281: TAT protein transport complex	7.59E-04
12	GO:0030658: transport vesicle membrane	1.08E-03
13	GO:0005719: nuclear euchromatin	1.08E-03
14	GO:0015630: microtubule cytoskeleton	1.08E-03
15	GO:0042646: plastid nucleoid	1.08E-03
16	GO:0009526: plastid envelope	1.44E-03
17	GO:0055035: plastid thylakoid membrane	1.83E-03
18	GO:0009535: chloroplast thylakoid membrane	2.91E-03
19	GO:0030529: intracellular ribonucleoprotein complex	2.98E-03
20	GO:0012507: ER to Golgi transport vesicle membrane	3.71E-03
21	GO:0009501: amyloplast	3.71E-03
22	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.24E-03
23	GO:0005720: nuclear heterochromatin	4.80E-03
24	GO:0015030: Cajal body	5.38E-03
25	GO:0009536: plastid	9.24E-03
26	GO:0016021: integral component of membrane	1.13E-02
27	GO:0042651: thylakoid membrane	1.17E-02
28	GO:0043231: intracellular membrane-bounded organelle	1.62E-02
29	GO:0005773: vacuole	1.85E-02
30	GO:0009523: photosystem II	1.96E-02
31	GO:0016020: membrane	1.99E-02
32	GO:0009705: plant-type vacuole membrane	2.11E-02
33	GO:0010319: stromule	2.46E-02
34	GO:0009707: chloroplast outer membrane	3.23E-02
35	GO:0000325: plant-type vacuole	3.58E-02
36	GO:0009941: chloroplast envelope	3.61E-02
37	GO:0031902: late endosome membrane	4.32E-02
38	GO:0031201: SNARE complex	4.32E-02