co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
2	GO:0045184: establishment of protein localization	0.00E+00
3	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
4	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
5	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:0006907: pinocytosis	0.00E+00
8	GO:0000819: sister chromatid segregation	0.00E+00
9	GO:0043039: tRNA aminoacylation	1.68E-05
10	GO:0046620: regulation of organ growth	4.77E-05
11	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.16E-04
12	GO:0048829: root cap development	1.47E-04
13	GO:0048497: maintenance of floral organ identity	3.01E-04
14	GO:0009733: response to auxin	4.76E-04
15	GO:0030488: tRNA methylation	5.59E-04
16	GO:0010726: positive regulation of hydrogen peroxide metabolic process	6.25E-04
17	GO:0006438: valyl-tRNA aminoacylation	6.25E-04
18	GO:0090558: plant epidermis development	6.25E-04
19	GO:0046520: sphingoid biosynthetic process	6.25E-04
20	GO:0070509: calcium ion import	6.25E-04
21	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	6.25E-04
22	GO:0010480: microsporocyte differentiation	6.25E-04
23	GO:0035987: endodermal cell differentiation	6.25E-04
24	GO:0015904: tetracycline transport	6.25E-04
25	GO:0006434: seryl-tRNA aminoacylation	6.25E-04
26	GO:0042659: regulation of cell fate specification	6.25E-04
27	GO:0009734: auxin-activated signaling pathway	7.37E-04
28	GO:0016042: lipid catabolic process	1.04E-03
29	GO:0009741: response to brassinosteroid	1.18E-03
30	GO:0009926: auxin polar transport	1.25E-03
31	GO:0018026: peptidyl-lysine monomethylation	1.34E-03
32	GO:0071497: cellular response to freezing	1.34E-03
33	GO:0001736: establishment of planar polarity	1.34E-03
34	GO:0080009: mRNA methylation	1.34E-03
35	GO:0009786: regulation of asymmetric cell division	1.34E-03
36	GO:0031648: protein destabilization	1.34E-03
37	GO:2000123: positive regulation of stomatal complex development	1.34E-03
38	GO:0010024: phytochromobilin biosynthetic process	1.34E-03
39	GO:1901529: positive regulation of anion channel activity	1.34E-03
40	GO:0006468: protein phosphorylation	2.13E-03
41	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	2.21E-03
42	GO:0030261: chromosome condensation	2.21E-03
43	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	2.21E-03
44	GO:0090708: specification of plant organ axis polarity	2.21E-03
45	GO:0010588: cotyledon vascular tissue pattern formation	2.70E-03
46	GO:0010020: chloroplast fission	3.05E-03
47	GO:0007276: gamete generation	3.22E-03
48	GO:0006424: glutamyl-tRNA aminoacylation	3.22E-03
49	GO:0010321: regulation of vegetative phase change	3.22E-03
50	GO:0010371: regulation of gibberellin biosynthetic process	3.22E-03
51	GO:0051513: regulation of monopolar cell growth	3.22E-03
52	GO:0010311: lateral root formation	3.74E-03
53	GO:0030104: water homeostasis	4.34E-03
54	GO:2000038: regulation of stomatal complex development	4.34E-03
55	GO:0042991: transcription factor import into nucleus	4.34E-03
56	GO:1901141: regulation of lignin biosynthetic process	4.34E-03
57	GO:0006865: amino acid transport	4.48E-03
58	GO:0003333: amino acid transmembrane transport	5.15E-03
59	GO:0045487: gibberellin catabolic process	5.58E-03
60	GO:0016123: xanthophyll biosynthetic process	5.58E-03
61	GO:0010375: stomatal complex patterning	5.58E-03
62	GO:0007005: mitochondrion organization	5.65E-03
63	GO:0009744: response to sucrose	6.58E-03
64	GO:0042127: regulation of cell proliferation	6.71E-03
65	GO:0010358: leaf shaping	6.92E-03
66	GO:0016554: cytidine to uridine editing	6.92E-03
67	GO:0009913: epidermal cell differentiation	6.92E-03
68	GO:0060918: auxin transport	6.92E-03
69	GO:1902456: regulation of stomatal opening	6.92E-03
70	GO:0042793: transcription from plastid promoter	6.92E-03
71	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.92E-03
72	GO:0003006: developmental process involved in reproduction	6.92E-03
73	GO:0010942: positive regulation of cell death	6.92E-03
74	GO:0010405: arabinogalactan protein metabolic process	6.92E-03
75	GO:0007165: signal transduction	7.09E-03
76	GO:0040008: regulation of growth	7.34E-03
77	GO:2000033: regulation of seed dormancy process	8.37E-03
78	GO:0010019: chloroplast-nucleus signaling pathway	8.37E-03
79	GO:2000067: regulation of root morphogenesis	8.37E-03
80	GO:0009958: positive gravitropism	8.50E-03
81	GO:0010182: sugar mediated signaling pathway	8.50E-03
82	GO:0009736: cytokinin-activated signaling pathway	9.65E-03
83	GO:0048825: cotyledon development	9.82E-03
84	GO:0048437: floral organ development	9.91E-03
85	GO:0000082: G1/S transition of mitotic cell cycle	9.91E-03
86	GO:0010444: guard mother cell differentiation	9.91E-03
87	GO:0000712: resolution of meiotic recombination intermediates	9.91E-03
88	GO:0048528: post-embryonic root development	9.91E-03
89	GO:1900056: negative regulation of leaf senescence	9.91E-03
90	GO:0071554: cell wall organization or biogenesis	1.05E-02
91	GO:0010583: response to cyclopentenone	1.13E-02
92	GO:0032502: developmental process	1.13E-02
93	GO:0001522: pseudouridine synthesis	1.16E-02
94	GO:0009690: cytokinin metabolic process	1.16E-02
95	GO:0009704: de-etiolation	1.16E-02
96	GO:0010492: maintenance of shoot apical meristem identity	1.16E-02
97	GO:0055075: potassium ion homeostasis	1.16E-02
98	GO:0000105: histidine biosynthetic process	1.16E-02
99	GO:0010497: plasmodesmata-mediated intercellular transport	1.33E-02
100	GO:0000910: cytokinesis	1.44E-02
101	GO:0051865: protein autoubiquitination	1.51E-02
102	GO:0048507: meristem development	1.51E-02
103	GO:0046916: cellular transition metal ion homeostasis	1.51E-02
104	GO:0000373: Group II intron splicing	1.51E-02
105	GO:0009056: catabolic process	1.51E-02
106	GO:0009835: fruit ripening	1.51E-02
107	GO:0010027: thylakoid membrane organization	1.53E-02
108	GO:0009658: chloroplast organization	1.53E-02
109	GO:0051726: regulation of cell cycle	1.63E-02
110	GO:0009098: leucine biosynthetic process	1.70E-02
111	GO:1900865: chloroplast RNA modification	1.70E-02
112	GO:2000280: regulation of root development	1.70E-02
113	GO:0009638: phototropism	1.70E-02
114	GO:0006779: porphyrin-containing compound biosynthetic process	1.70E-02
115	GO:0071555: cell wall organization	1.77E-02
116	GO:0010162: seed dormancy process	1.90E-02
117	GO:0006782: protoporphyrinogen IX biosynthetic process	1.90E-02
118	GO:0009641: shade avoidance	1.90E-02
119	GO:0016441: posttranscriptional gene silencing	1.90E-02
120	GO:0006949: syncytium formation	1.90E-02
121	GO:0006259: DNA metabolic process	1.90E-02
122	GO:0031627: telomeric loop formation	1.90E-02
123	GO:0048481: plant ovule development	2.00E-02
124	GO:0000160: phosphorelay signal transduction system	2.10E-02
125	GO:0006265: DNA topological change	2.11E-02
126	GO:0009073: aromatic amino acid family biosynthetic process	2.11E-02
127	GO:0009750: response to fructose	2.11E-02
128	GO:0048229: gametophyte development	2.11E-02
129	GO:0048765: root hair cell differentiation	2.11E-02
130	GO:0010582: floral meristem determinacy	2.32E-02
131	GO:0000266: mitochondrial fission	2.32E-02
132	GO:0006312: mitotic recombination	2.32E-02
133	GO:0012501: programmed cell death	2.32E-02
134	GO:2000012: regulation of auxin polar transport	2.54E-02
135	GO:0030048: actin filament-based movement	2.54E-02
136	GO:0010102: lateral root morphogenesis	2.54E-02
137	GO:0009785: blue light signaling pathway	2.54E-02
138	GO:0009691: cytokinin biosynthetic process	2.54E-02
139	GO:0010075: regulation of meristem growth	2.54E-02
140	GO:0009725: response to hormone	2.54E-02
141	GO:0009767: photosynthetic electron transport chain	2.54E-02
142	GO:0007034: vacuolar transport	2.77E-02
143	GO:0009887: animal organ morphogenesis	2.77E-02
144	GO:0009934: regulation of meristem structural organization	2.77E-02
145	GO:0006302: double-strand break repair	2.77E-02
146	GO:0048467: gynoecium development	2.77E-02
147	GO:0030001: metal ion transport	2.90E-02
148	GO:0090351: seedling development	3.01E-02
149	GO:0070588: calcium ion transmembrane transport	3.01E-02
150	GO:0006631: fatty acid metabolic process	3.02E-02
151	GO:0009416: response to light stimulus	3.23E-02
152	GO:0006636: unsaturated fatty acid biosynthetic process	3.25E-02
153	GO:0006071: glycerol metabolic process	3.25E-02
154	GO:0006833: water transport	3.25E-02
155	GO:0000162: tryptophan biosynthetic process	3.25E-02
156	GO:0009640: photomorphogenesis	3.28E-02
157	GO:0051017: actin filament bundle assembly	3.50E-02
158	GO:0005992: trehalose biosynthetic process	3.50E-02
159	GO:0007166: cell surface receptor signaling pathway	3.57E-02
160	GO:0006418: tRNA aminoacylation for protein translation	3.75E-02
161	GO:0051302: regulation of cell division	3.75E-02
162	GO:0019953: sexual reproduction	3.75E-02
163	GO:0016567: protein ubiquitination	4.01E-02
164	GO:0051321: meiotic cell cycle	4.01E-02
165	GO:0010431: seed maturation	4.01E-02
166	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.28E-02
167	GO:0009793: embryo development ending in seed dormancy	4.53E-02
168	GO:0009693: ethylene biosynthetic process	4.55E-02
169	GO:0071215: cellular response to abscisic acid stimulus	4.55E-02
170	GO:0009686: gibberellin biosynthetic process	4.55E-02
171	GO:0010082: regulation of root meristem growth	4.55E-02
172	GO:0006351: transcription, DNA-templated	4.70E-02
173	GO:0010091: trichome branching	4.83E-02
174	GO:0009826: unidimensional cell growth	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
5	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
6	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
7	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
8	GO:0052689: carboxylic ester hydrolase activity	5.83E-04
9	GO:0004828: serine-tRNA ligase activity	6.25E-04
10	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.25E-04
11	GO:0004818: glutamate-tRNA ligase activity	6.25E-04
12	GO:0052381: tRNA dimethylallyltransferase activity	6.25E-04
13	GO:0009374: biotin binding	6.25E-04
14	GO:0004832: valine-tRNA ligase activity	6.25E-04
15	GO:0010012: steroid 22-alpha hydroxylase activity	6.25E-04
16	GO:0000170: sphingosine hydroxylase activity	6.25E-04
17	GO:0050139: nicotinate-N-glucosyltransferase activity	6.25E-04
18	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	6.25E-04
19	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	6.25E-04
20	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.18E-03
21	GO:0042284: sphingolipid delta-4 desaturase activity	1.34E-03
22	GO:0008493: tetracycline transporter activity	1.34E-03
23	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.34E-03
24	GO:0003852: 2-isopropylmalate synthase activity	1.34E-03
25	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.34E-03
26	GO:0010296: prenylcysteine methylesterase activity	1.34E-03
27	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.34E-03
28	GO:0043621: protein self-association	1.41E-03
29	GO:0004674: protein serine/threonine kinase activity	1.77E-03
30	GO:0016298: lipase activity	2.09E-03
31	GO:0070330: aromatase activity	2.21E-03
32	GO:0003916: DNA topoisomerase activity	3.22E-03
33	GO:0001872: (1->3)-beta-D-glucan binding	3.22E-03
34	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.22E-03
35	GO:0005515: protein binding	3.93E-03
36	GO:0010328: auxin influx transmembrane transporter activity	4.34E-03
37	GO:0019199: transmembrane receptor protein kinase activity	4.34E-03
38	GO:0016279: protein-lysine N-methyltransferase activity	4.34E-03
39	GO:0010011: auxin binding	4.34E-03
40	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.34E-03
41	GO:0016788: hydrolase activity, acting on ester bonds	4.36E-03
42	GO:0004707: MAP kinase activity	5.15E-03
43	GO:0004176: ATP-dependent peptidase activity	5.15E-03
44	GO:0008408: 3'-5' exonuclease activity	5.15E-03
45	GO:0018685: alkane 1-monooxygenase activity	5.58E-03
46	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.58E-03
47	GO:0003989: acetyl-CoA carboxylase activity	5.58E-03
48	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.92E-03
49	GO:0004709: MAP kinase kinase kinase activity	6.92E-03
50	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	8.37E-03
51	GO:0016832: aldehyde-lyase activity	8.37E-03
52	GO:0004527: exonuclease activity	8.50E-03
53	GO:0004871: signal transducer activity	9.15E-03
54	GO:0004722: protein serine/threonine phosphatase activity	9.92E-03
55	GO:0005524: ATP binding	1.03E-02
56	GO:0015171: amino acid transmembrane transporter activity	1.10E-02
57	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.16E-02
58	GO:0000156: phosphorelay response regulator activity	1.20E-02
59	GO:0051015: actin filament binding	1.20E-02
60	GO:0046914: transition metal ion binding	1.33E-02
61	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.33E-02
62	GO:0008173: RNA methyltransferase activity	1.33E-02
63	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.33E-02
64	GO:0003724: RNA helicase activity	1.33E-02
65	GO:0004650: polygalacturonase activity	1.35E-02
66	GO:0008237: metallopeptidase activity	1.36E-02
67	GO:0009055: electron carrier activity	1.37E-02
68	GO:0016413: O-acetyltransferase activity	1.44E-02
69	GO:0003779: actin binding	1.46E-02
70	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.51E-02
71	GO:0004805: trehalose-phosphatase activity	1.90E-02
72	GO:0016301: kinase activity	2.07E-02
73	GO:0003691: double-stranded telomeric DNA binding	2.11E-02
74	GO:0004222: metalloendopeptidase activity	2.21E-02
75	GO:0000049: tRNA binding	2.32E-02
76	GO:0003725: double-stranded RNA binding	2.54E-02
77	GO:0003697: single-stranded DNA binding	2.54E-02
78	GO:0005262: calcium channel activity	2.54E-02
79	GO:0009982: pseudouridine synthase activity	2.54E-02
80	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.77E-02
81	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.77E-02
82	GO:0003774: motor activity	2.77E-02
83	GO:0042803: protein homodimerization activity	2.95E-02
84	GO:0008146: sulfotransferase activity	3.01E-02
85	GO:0003712: transcription cofactor activity	3.01E-02
86	GO:0004190: aspartic-type endopeptidase activity	3.01E-02
87	GO:0008017: microtubule binding	3.20E-02
88	GO:0003723: RNA binding	3.23E-02
89	GO:0051536: iron-sulfur cluster binding	3.50E-02
90	GO:0015293: symporter activity	3.68E-02
91	GO:0004672: protein kinase activity	3.88E-02
92	GO:0008094: DNA-dependent ATPase activity	4.01E-02
93	GO:0033612: receptor serine/threonine kinase binding	4.01E-02
94	GO:0030570: pectate lyase activity	4.55E-02
95	GO:0003727: single-stranded RNA binding	4.83E-02
96	GO:0003777: microtubule motor activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0000791: euchromatin	6.25E-04
3	GO:0000796: condensin complex	6.25E-04
4	GO:0009986: cell surface	7.14E-04
5	GO:0031357: integral component of chloroplast inner membrane	1.34E-03
6	GO:0030870: Mre11 complex	1.34E-03
7	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.34E-03
8	GO:0030139: endocytic vesicle	2.21E-03
9	GO:0009317: acetyl-CoA carboxylase complex	2.21E-03
10	GO:0032585: multivesicular body membrane	3.22E-03
11	GO:0009544: chloroplast ATP synthase complex	4.34E-03
12	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	4.34E-03
13	GO:0009654: photosystem II oxygen evolving complex	4.68E-03
14	GO:0000795: synaptonemal complex	5.58E-03
15	GO:0015629: actin cytoskeleton	6.16E-03
16	GO:0000793: condensed chromosome	6.92E-03
17	GO:0005886: plasma membrane	7.08E-03
18	GO:0000815: ESCRT III complex	8.37E-03
19	GO:0019898: extrinsic component of membrane	9.82E-03
20	GO:0000794: condensed nuclear chromosome	9.91E-03
21	GO:0048226: Casparian strip	1.16E-02
22	GO:0046658: anchored component of plasma membrane	1.21E-02
23	GO:0000783: nuclear telomere cap complex	1.33E-02
24	GO:0010494: cytoplasmic stress granule	1.51E-02
25	GO:0009534: chloroplast thylakoid	1.66E-02
26	GO:0000418: DNA-directed RNA polymerase IV complex	1.90E-02
27	GO:0016459: myosin complex	1.90E-02
28	GO:0090404: pollen tube tip	2.11E-02
29	GO:0005884: actin filament	2.11E-02
30	GO:0009508: plastid chromosome	2.54E-02
31	GO:0030095: chloroplast photosystem II	2.77E-02
32	GO:0005856: cytoskeleton	3.68E-02
33	GO:0005576: extracellular region	4.41E-02