co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0015979: photosynthesis	1.16E-09
3	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.67E-08
4	GO:0090391: granum assembly	2.98E-07
5	GO:0006000: fructose metabolic process	2.98E-07
6	GO:0010196: nonphotochemical quenching	7.64E-06
7	GO:0032544: plastid translation	1.32E-05
8	GO:0006002: fructose 6-phosphate metabolic process	1.32E-05
9	GO:0071588: hydrogen peroxide mediated signaling pathway	3.37E-05
10	GO:0006094: gluconeogenesis	4.16E-05
11	GO:0005986: sucrose biosynthetic process	4.16E-05
12	GO:0006636: unsaturated fatty acid biosynthetic process	6.26E-05
13	GO:0009768: photosynthesis, light harvesting in photosystem I	7.90E-05
14	GO:0006518: peptide metabolic process	1.47E-04
15	GO:0009735: response to cytokinin	1.48E-04
16	GO:0000302: response to reactive oxygen species	1.91E-04
17	GO:0010027: thylakoid membrane organization	2.81E-04
18	GO:0045727: positive regulation of translation	2.95E-04
19	GO:0009658: chloroplast organization	3.03E-04
20	GO:0042254: ribosome biogenesis	3.10E-04
21	GO:0015995: chlorophyll biosynthetic process	3.31E-04
22	GO:0006412: translation	3.37E-04
23	GO:0018298: protein-chromophore linkage	3.66E-04
24	GO:0006461: protein complex assembly	3.77E-04
25	GO:0010218: response to far red light	4.04E-04
26	GO:0009631: cold acclimation	4.23E-04
27	GO:0009637: response to blue light	4.63E-04
28	GO:0034599: cellular response to oxidative stress	4.83E-04
29	GO:0010019: chloroplast-nucleus signaling pathway	5.53E-04
30	GO:0010114: response to red light	5.92E-04
31	GO:0009772: photosynthetic electron transport in photosystem II	6.47E-04
32	GO:0009657: plastid organization	8.45E-04
33	GO:0010206: photosystem II repair	9.49E-04
34	GO:0006754: ATP biosynthetic process	9.49E-04
35	GO:0010205: photoinhibition	1.06E-03
36	GO:0055114: oxidation-reduction process	1.13E-03
37	GO:0009089: lysine biosynthetic process via diaminopimelate	1.28E-03
38	GO:0000272: polysaccharide catabolic process	1.28E-03
39	GO:0009750: response to fructose	1.28E-03
40	GO:0018119: peptidyl-cysteine S-nitrosylation	1.28E-03
41	GO:0009773: photosynthetic electron transport in photosystem I	1.28E-03
42	GO:0005983: starch catabolic process	1.40E-03
43	GO:0042744: hydrogen peroxide catabolic process	1.54E-03
44	GO:0009266: response to temperature stimulus	1.65E-03
45	GO:0019253: reductive pentose-phosphate cycle	1.65E-03
46	GO:0006633: fatty acid biosynthetic process	1.70E-03
47	GO:0071732: cellular response to nitric oxide	1.78E-03
48	GO:0005985: sucrose metabolic process	1.78E-03
49	GO:0061077: chaperone-mediated protein folding	2.33E-03
50	GO:0035428: hexose transmembrane transport	2.48E-03
51	GO:0071369: cellular response to ethylene stimulus	2.63E-03
52	GO:0070417: cellular response to cold	2.94E-03
53	GO:0042631: cellular response to water deprivation	3.09E-03
54	GO:0046323: glucose import	3.25E-03
55	GO:0015986: ATP synthesis coupled proton transport	3.42E-03
56	GO:0071281: cellular response to iron ion	4.10E-03
57	GO:0009409: response to cold	4.72E-03
58	GO:0016311: dephosphorylation	5.60E-03
59	GO:0009793: embryo development ending in seed dormancy	9.31E-03
60	GO:0006364: rRNA processing	1.00E-02
61	GO:0045893: positive regulation of transcription, DNA-templated	1.06E-02
62	GO:0007623: circadian rhythm	1.89E-02
63	GO:0010468: regulation of gene expression	2.15E-02
64	GO:0006810: transport	2.75E-02
65	GO:0009723: response to ethylene	2.87E-02
66	GO:0080167: response to karrikin	3.01E-02
67	GO:0006869: lipid transport	3.66E-02
68	GO:0032259: methylation	3.85E-02
69	GO:0006629: lipid metabolic process	3.97E-02

Rank	GO Term	Adjusted P value
1	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.67E-08
2	GO:0019843: rRNA binding	8.54E-08
3	GO:0005528: FK506 binding	8.07E-07
4	GO:0004130: cytochrome-c peroxidase activity	3.75E-06
5	GO:0045485: omega-6 fatty acid desaturase activity	3.37E-05
6	GO:0003735: structural constituent of ribosome	3.48E-05
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.53E-05
8	GO:0031409: pigment binding	6.26E-05
9	GO:0018708: thiol S-methyltransferase activity	8.48E-05
10	GO:0016630: protochlorophyllide reductase activity	8.48E-05
11	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.48E-05
12	GO:0042389: omega-3 fatty acid desaturase activity	8.48E-05
13	GO:0010297: heteropolysaccharide binding	8.48E-05
14	GO:0070402: NADPH binding	1.47E-04
15	GO:0016851: magnesium chelatase activity	2.18E-04
16	GO:0016168: chlorophyll binding	2.97E-04
17	GO:0016688: L-ascorbate peroxidase activity	4.63E-04
18	GO:0004033: aldo-keto reductase (NADP) activity	7.44E-04
19	GO:0016491: oxidoreductase activity	8.10E-04
20	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.45E-04
21	GO:0030234: enzyme regulator activity	1.17E-03
22	GO:0044183: protein binding involved in protein folding	1.28E-03
23	GO:0031072: heat shock protein binding	1.52E-03
24	GO:0003756: protein disulfide isomerase activity	2.78E-03
25	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.25E-03
26	GO:0005355: glucose transmembrane transporter activity	3.42E-03
27	GO:0050662: coenzyme binding	3.42E-03
28	GO:0048038: quinone binding	3.76E-03
29	GO:0004222: metalloendopeptidase activity	6.20E-03
30	GO:0051082: unfolded protein binding	1.28E-02
31	GO:0046872: metal ion binding	1.57E-02
32	GO:0015144: carbohydrate transmembrane transporter activity	1.71E-02
33	GO:0005351: sugar:proton symporter activity	1.86E-02
34	GO:0008168: methyltransferase activity	2.51E-02
35	GO:0004601: peroxidase activity	2.58E-02
36	GO:0020037: heme binding	2.95E-02
37	GO:0003723: RNA binding	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	1.82E-25
3	GO:0009535: chloroplast thylakoid membrane	7.47E-24
4	GO:0009534: chloroplast thylakoid	2.55E-23
5	GO:0009941: chloroplast envelope	6.58E-21
6	GO:0009579: thylakoid	4.59E-16
7	GO:0009570: chloroplast stroma	7.61E-14
8	GO:0009543: chloroplast thylakoid lumen	1.42E-09
9	GO:0031977: thylakoid lumen	6.03E-09
10	GO:0005840: ribosome	3.32E-07
11	GO:0030076: light-harvesting complex	5.51E-05
12	GO:0009706: chloroplast inner membrane	7.58E-05
13	GO:0031357: integral component of chloroplast inner membrane	8.48E-05
14	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.48E-05
15	GO:0010287: plastoglobule	9.77E-05
16	GO:0010007: magnesium chelatase complex	1.47E-04
17	GO:0009522: photosystem I	1.65E-04
18	GO:0009523: photosystem II	1.78E-04
19	GO:0010319: stromule	2.49E-04
20	GO:0009544: chloroplast ATP synthase complex	2.95E-04
21	GO:0031969: chloroplast membrane	4.00E-04
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.63E-04
23	GO:0009533: chloroplast stromal thylakoid	6.47E-04
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.49E-04
25	GO:0030095: chloroplast photosystem II	1.65E-03
26	GO:0015935: small ribosomal subunit	2.33E-03
27	GO:0016020: membrane	4.26E-03
28	GO:0016021: integral component of membrane	4.66E-03
29	GO:0009707: chloroplast outer membrane	5.79E-03
30	GO:0015934: large ribosomal subunit	6.40E-03