co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006573: valine metabolic process	0.00E+00
2	GO:0000372: Group I intron splicing	0.00E+00
3	GO:0000012: single strand break repair	1.44E-04
4	GO:0006551: leucine metabolic process	1.44E-04
5	GO:0006436: tryptophanyl-tRNA aminoacylation	1.44E-04
6	GO:0000066: mitochondrial ornithine transport	1.44E-04
7	GO:0009090: homoserine biosynthetic process	1.44E-04
8	GO:0043489: RNA stabilization	1.44E-04
9	GO:0000373: Group II intron splicing	1.53E-04
10	GO:0009451: RNA modification	3.02E-04
11	GO:0030029: actin filament-based process	5.40E-04
12	GO:0009067: aspartate family amino acid biosynthetic process	7.73E-04
13	GO:0009102: biotin biosynthetic process	7.73E-04
14	GO:0010239: chloroplast mRNA processing	7.73E-04
15	GO:0044211: CTP salvage	7.73E-04
16	GO:0042989: sequestering of actin monomers	7.73E-04
17	GO:0009800: cinnamic acid biosynthetic process	7.73E-04
18	GO:2000904: regulation of starch metabolic process	7.73E-04
19	GO:0048442: sepal development	1.02E-03
20	GO:0044206: UMP salvage	1.02E-03
21	GO:0010158: abaxial cell fate specification	1.29E-03
22	GO:0080110: sporopollenin biosynthetic process	1.29E-03
23	GO:0030041: actin filament polymerization	1.29E-03
24	GO:0006559: L-phenylalanine catabolic process	1.59E-03
25	GO:0006206: pyrimidine nucleobase metabolic process	1.59E-03
26	GO:0010190: cytochrome b6f complex assembly	1.59E-03
27	GO:0009099: valine biosynthetic process	1.91E-03
28	GO:0009088: threonine biosynthetic process	1.91E-03
29	GO:0009648: photoperiodism	1.91E-03
30	GO:0010076: maintenance of floral meristem identity	1.91E-03
31	GO:0009082: branched-chain amino acid biosynthetic process	1.91E-03
32	GO:0051510: regulation of unidimensional cell growth	2.24E-03
33	GO:0010050: vegetative phase change	2.24E-03
34	GO:0010098: suspensor development	2.24E-03
35	GO:0070413: trehalose metabolism in response to stress	2.60E-03
36	GO:0009850: auxin metabolic process	2.60E-03
37	GO:0009097: isoleucine biosynthetic process	2.96E-03
38	GO:0071482: cellular response to light stimulus	2.96E-03
39	GO:0009827: plant-type cell wall modification	2.96E-03
40	GO:0016573: histone acetylation	3.76E-03
41	GO:0009086: methionine biosynthetic process	3.76E-03
42	GO:0016571: histone methylation	3.76E-03
43	GO:0006259: DNA metabolic process	4.18E-03
44	GO:0048441: petal development	4.18E-03
45	GO:0006535: cysteine biosynthetic process from serine	4.18E-03
46	GO:0006415: translational termination	4.61E-03
47	GO:0006265: DNA topological change	4.61E-03
48	GO:0009089: lysine biosynthetic process via diaminopimelate	4.61E-03
49	GO:0010582: floral meristem determinacy	5.06E-03
50	GO:0009266: response to temperature stimulus	6.00E-03
51	GO:0006302: double-strand break repair	6.00E-03
52	GO:0048440: carpel development	6.00E-03
53	GO:0048316: seed development	6.16E-03
54	GO:0090351: seedling development	6.50E-03
55	GO:0006863: purine nucleobase transport	7.00E-03
56	GO:0006289: nucleotide-excision repair	7.52E-03
57	GO:0005992: trehalose biosynthetic process	7.52E-03
58	GO:0019344: cysteine biosynthetic process	7.52E-03
59	GO:0030150: protein import into mitochondrial matrix	7.52E-03
60	GO:0006338: chromatin remodeling	7.52E-03
61	GO:0007010: cytoskeleton organization	7.52E-03
62	GO:0006418: tRNA aminoacylation for protein translation	8.06E-03
63	GO:0015992: proton transport	8.61E-03
64	GO:0035428: hexose transmembrane transport	9.17E-03
65	GO:0009058: biosynthetic process	9.48E-03
66	GO:0009845: seed germination	9.73E-03
67	GO:0010584: pollen exine formation	1.03E-02
68	GO:0048443: stamen development	1.03E-02
69	GO:0016117: carotenoid biosynthetic process	1.09E-02
70	GO:0046323: glucose import	1.22E-02
71	GO:0045489: pectin biosynthetic process	1.22E-02
72	GO:0009958: positive gravitropism	1.22E-02
73	GO:0007059: chromosome segregation	1.28E-02
74	GO:0000302: response to reactive oxygen species	1.41E-02
75	GO:0007264: small GTPase mediated signal transduction	1.48E-02
76	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.91E-02
77	GO:0009658: chloroplast organization	1.93E-02
78	GO:0042254: ribosome biogenesis	1.97E-02
79	GO:0048481: plant ovule development	2.22E-02
80	GO:0030244: cellulose biosynthetic process	2.22E-02
81	GO:0000160: phosphorelay signal transduction system	2.30E-02
82	GO:0009834: plant-type secondary cell wall biogenesis	2.38E-02
83	GO:0009910: negative regulation of flower development	2.46E-02
84	GO:0009631: cold acclimation	2.46E-02
85	GO:0048527: lateral root development	2.46E-02
86	GO:0055114: oxidation-reduction process	2.53E-02
87	GO:0006839: mitochondrial transport	2.88E-02
88	GO:0045892: negative regulation of transcription, DNA-templated	2.91E-02
89	GO:0008283: cell proliferation	3.15E-02
90	GO:0009636: response to toxic substance	3.42E-02
91	GO:0009965: leaf morphogenesis	3.42E-02
92	GO:0009793: embryo development ending in seed dormancy	3.47E-02
93	GO:0000165: MAPK cascade	3.60E-02
94	GO:0006397: mRNA processing	3.68E-02
95	GO:0006812: cation transport	3.70E-02
96	GO:0006364: rRNA processing	3.89E-02
97	GO:0009736: cytokinin-activated signaling pathway	3.89E-02
98	GO:0016569: covalent chromatin modification	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
2	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
3	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
4	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.44E-04
5	GO:0004830: tryptophan-tRNA ligase activity	1.44E-04
6	GO:0005227: calcium activated cation channel activity	1.44E-04
7	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.44E-04
8	GO:0005290: L-histidine transmembrane transporter activity	1.44E-04
9	GO:0003984: acetolactate synthase activity	1.44E-04
10	GO:0050017: L-3-cyanoalanine synthase activity	3.29E-04
11	GO:0080041: ADP-ribose pyrophosphohydrolase activity	3.29E-04
12	GO:0008805: carbon-monoxide oxygenase activity	3.29E-04
13	GO:0000064: L-ornithine transmembrane transporter activity	3.29E-04
14	GO:0004412: homoserine dehydrogenase activity	3.29E-04
15	GO:0050736: O-malonyltransferase activity	3.29E-04
16	GO:0045548: phenylalanine ammonia-lyase activity	5.40E-04
17	GO:0004148: dihydrolipoyl dehydrogenase activity	5.40E-04
18	GO:0001872: (1->3)-beta-D-glucan binding	7.73E-04
19	GO:0015189: L-lysine transmembrane transporter activity	7.73E-04
20	GO:0004072: aspartate kinase activity	7.73E-04
21	GO:0015181: arginine transmembrane transporter activity	7.73E-04
22	GO:0009678: hydrogen-translocating pyrophosphatase activity	7.73E-04
23	GO:0005319: lipid transporter activity	1.02E-03
24	GO:0004845: uracil phosphoribosyltransferase activity	1.02E-03
25	GO:0070628: proteasome binding	1.02E-03
26	GO:0003785: actin monomer binding	1.29E-03
27	GO:0031593: polyubiquitin binding	1.59E-03
28	GO:0004519: endonuclease activity	1.62E-03
29	GO:0016597: amino acid binding	1.68E-03
30	GO:0004656: procollagen-proline 4-dioxygenase activity	1.91E-03
31	GO:0004124: cysteine synthase activity	1.91E-03
32	GO:0004849: uridine kinase activity	1.91E-03
33	GO:0004427: inorganic diphosphatase activity	2.24E-03
34	GO:0043022: ribosome binding	2.60E-03
35	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.96E-03
36	GO:0003747: translation release factor activity	3.35E-03
37	GO:0016491: oxidoreductase activity	4.15E-03
38	GO:0004805: trehalose-phosphatase activity	4.18E-03
39	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.61E-03
40	GO:0015266: protein channel activity	5.52E-03
41	GO:0008266: poly(U) RNA binding	6.00E-03
42	GO:0005525: GTP binding	7.27E-03
43	GO:0031418: L-ascorbic acid binding	7.52E-03
44	GO:0004857: enzyme inhibitor activity	7.52E-03
45	GO:0043130: ubiquitin binding	7.52E-03
46	GO:0005345: purine nucleobase transmembrane transporter activity	8.06E-03
47	GO:0030170: pyridoxal phosphate binding	9.99E-03
48	GO:0004812: aminoacyl-tRNA ligase activity	1.09E-02
49	GO:0004527: exonuclease activity	1.22E-02
50	GO:0008536: Ran GTPase binding	1.22E-02
51	GO:0010181: FMN binding	1.28E-02
52	GO:0005355: glucose transmembrane transporter activity	1.28E-02
53	GO:0050662: coenzyme binding	1.28E-02
54	GO:0019901: protein kinase binding	1.35E-02
55	GO:0003723: RNA binding	1.35E-02
56	GO:0000156: phosphorelay response regulator activity	1.55E-02
57	GO:0003684: damaged DNA binding	1.62E-02
58	GO:0016791: phosphatase activity	1.62E-02
59	GO:0005200: structural constituent of cytoskeleton	1.69E-02
60	GO:0008483: transaminase activity	1.69E-02
61	GO:0016413: O-acetyltransferase activity	1.76E-02
62	GO:0016740: transferase activity	1.95E-02
63	GO:0030247: polysaccharide binding	2.06E-02
64	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.15E-02
65	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.22E-02
66	GO:0050660: flavin adenine dinucleotide binding	2.23E-02
67	GO:0004222: metalloendopeptidase activity	2.38E-02
68	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.46E-02
69	GO:0050897: cobalt ion binding	2.46E-02
70	GO:0003746: translation elongation factor activity	2.63E-02
71	GO:0003697: single-stranded DNA binding	2.63E-02
72	GO:0050661: NADP binding	2.88E-02
73	GO:0004364: glutathione transferase activity	3.06E-02
74	GO:0016787: hydrolase activity	3.10E-02
75	GO:0003924: GTPase activity	3.53E-02
76	GO:0003690: double-stranded DNA binding	3.98E-02
77	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.48E-02
78	GO:0003779: actin binding	4.89E-02
79	GO:0008289: lipid binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	5.18E-09
4	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.44E-04
5	GO:0009513: etioplast	3.29E-04
6	GO:0009509: chromoplast	5.40E-04
7	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.02E-03
8	GO:0030529: intracellular ribonucleoprotein complex	1.78E-03
9	GO:0009707: chloroplast outer membrane	2.31E-03
10	GO:0031305: integral component of mitochondrial inner membrane	2.60E-03
11	GO:0009501: amyloplast	2.60E-03
12	GO:0005938: cell cortex	5.52E-03
13	GO:0009706: chloroplast inner membrane	7.18E-03
14	GO:0042651: thylakoid membrane	8.06E-03
15	GO:0009532: plastid stroma	8.61E-03
16	GO:0009570: chloroplast stroma	9.33E-03
17	GO:0015629: actin cytoskeleton	9.75E-03
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.03E-02
19	GO:0031965: nuclear membrane	1.35E-02
20	GO:0009295: nucleoid	1.69E-02
21	GO:0031969: chloroplast membrane	2.39E-02
22	GO:0005802: trans-Golgi network	2.74E-02
23	GO:0005768: endosome	3.21E-02
24	GO:0005856: cytoskeleton	3.42E-02
25	GO:0043231: intracellular membrane-bounded organelle	3.89E-02
26	GO:0005747: mitochondrial respiratory chain complex I	4.48E-02
27	GO:0009536: plastid	4.69E-02