co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:0031222: arabinan catabolic process	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0043392: negative regulation of DNA binding	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0017038: protein import	0.00E+00
9	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
10	GO:0042407: cristae formation	0.00E+00
11	GO:0046620: regulation of organ growth	7.35E-07
12	GO:0009733: response to auxin	7.98E-07
13	GO:0018026: peptidyl-lysine monomethylation	1.41E-05
14	GO:0009734: auxin-activated signaling pathway	2.78E-05
15	GO:0010497: plasmodesmata-mediated intercellular transport	5.35E-05
16	GO:0046739: transport of virus in multicellular host	9.96E-05
17	GO:0016556: mRNA modification	9.96E-05
18	GO:0005983: starch catabolic process	1.83E-04
19	GO:0016123: xanthophyll biosynthetic process	2.60E-04
20	GO:0040008: regulation of growth	3.12E-04
21	GO:0042793: transcription from plastid promoter	3.65E-04
22	GO:0030488: tRNA methylation	4.87E-04
23	GO:0042372: phylloquinone biosynthetic process	4.87E-04
24	GO:0046520: sphingoid biosynthetic process	5.68E-04
25	GO:0010442: guard cell morphogenesis	5.68E-04
26	GO:0010480: microsporocyte differentiation	5.68E-04
27	GO:0042759: long-chain fatty acid biosynthetic process	5.68E-04
28	GO:0042371: vitamin K biosynthetic process	5.68E-04
29	GO:1902458: positive regulation of stomatal opening	5.68E-04
30	GO:0015904: tetracycline transport	5.68E-04
31	GO:0005991: trehalose metabolic process	5.68E-04
32	GO:0000025: maltose catabolic process	5.68E-04
33	GO:0070509: calcium ion import	5.68E-04
34	GO:0005980: glycogen catabolic process	5.68E-04
35	GO:0030198: extracellular matrix organization	5.68E-04
36	GO:0009658: chloroplast organization	8.44E-04
37	GO:0006631: fatty acid metabolic process	8.94E-04
38	GO:0010182: sugar mediated signaling pathway	9.94E-04
39	GO:0006423: cysteinyl-tRNA aminoacylation	1.22E-03
40	GO:0071497: cellular response to freezing	1.22E-03
41	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.22E-03
42	GO:0006568: tryptophan metabolic process	1.22E-03
43	GO:2000123: positive regulation of stomatal complex development	1.22E-03
44	GO:0052541: plant-type cell wall cellulose metabolic process	1.22E-03
45	GO:0019388: galactose catabolic process	1.22E-03
46	GO:0031425: chloroplast RNA processing	1.33E-03
47	GO:0009638: phototropism	1.33E-03
48	GO:1900865: chloroplast RNA modification	1.33E-03
49	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.38E-03
50	GO:0010583: response to cyclopentenone	1.41E-03
51	GO:0009641: shade avoidance	1.55E-03
52	GO:0009773: photosynthetic electron transport in photosystem I	1.80E-03
53	GO:0033591: response to L-ascorbic acid	2.01E-03
54	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	2.01E-03
55	GO:0010102: lateral root morphogenesis	2.34E-03
56	GO:0010628: positive regulation of gene expression	2.34E-03
57	GO:0006006: glucose metabolic process	2.34E-03
58	GO:0010588: cotyledon vascular tissue pattern formation	2.34E-03
59	GO:2000012: regulation of auxin polar transport	2.34E-03
60	GO:0030048: actin filament-based movement	2.34E-03
61	GO:0015995: chlorophyll biosynthetic process	2.56E-03
62	GO:0010020: chloroplast fission	2.64E-03
63	GO:0016042: lipid catabolic process	2.65E-03
64	GO:0009416: response to light stimulus	2.85E-03
65	GO:1990019: protein storage vacuole organization	2.92E-03
66	GO:0009590: detection of gravity	2.92E-03
67	GO:0043572: plastid fission	2.92E-03
68	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.92E-03
69	GO:0010321: regulation of vegetative phase change	2.92E-03
70	GO:0010371: regulation of gibberellin biosynthetic process	2.92E-03
71	GO:0009102: biotin biosynthetic process	2.92E-03
72	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.92E-03
73	GO:0006071: glycerol metabolic process	3.31E-03
74	GO:1901141: regulation of lignin biosynthetic process	3.93E-03
75	GO:0010109: regulation of photosynthesis	3.93E-03
76	GO:0009765: photosynthesis, light harvesting	3.93E-03
77	GO:2000038: regulation of stomatal complex development	3.93E-03
78	GO:0030245: cellulose catabolic process	4.89E-03
79	GO:0046907: intracellular transport	5.05E-03
80	GO:0016120: carotene biosynthetic process	5.05E-03
81	GO:0010236: plastoquinone biosynthetic process	5.05E-03
82	GO:0045038: protein import into chloroplast thylakoid membrane	5.05E-03
83	GO:0048497: maintenance of floral organ identity	5.05E-03
84	GO:0010375: stomatal complex patterning	5.05E-03
85	GO:0009640: photomorphogenesis	5.48E-03
86	GO:0009926: auxin polar transport	5.48E-03
87	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.26E-03
88	GO:0000741: karyogamy	6.26E-03
89	GO:0010405: arabinogalactan protein metabolic process	6.26E-03
90	GO:0009959: negative gravitropism	6.26E-03
91	GO:0009913: epidermal cell differentiation	6.26E-03
92	GO:0016554: cytidine to uridine editing	6.26E-03
93	GO:1902456: regulation of stomatal opening	6.26E-03
94	GO:0033365: protein localization to organelle	6.26E-03
95	GO:0006855: drug transmembrane transport	6.68E-03
96	GO:0045892: negative regulation of transcription, DNA-templated	6.75E-03
97	GO:0010305: leaf vascular tissue pattern formation	7.36E-03
98	GO:0010197: polar nucleus fusion	7.36E-03
99	GO:0017148: negative regulation of translation	7.56E-03
100	GO:2000033: regulation of seed dormancy process	7.56E-03
101	GO:0048509: regulation of meristem development	7.56E-03
102	GO:0009099: valine biosynthetic process	7.56E-03
103	GO:0080086: stamen filament development	7.56E-03
104	GO:0042026: protein refolding	7.56E-03
105	GO:0009082: branched-chain amino acid biosynthetic process	7.56E-03
106	GO:0006458: 'de novo' protein folding	7.56E-03
107	GO:0019252: starch biosynthetic process	8.50E-03
108	GO:0010444: guard mother cell differentiation	8.96E-03
109	GO:0030307: positive regulation of cell growth	8.96E-03
110	GO:0010161: red light signaling pathway	8.96E-03
111	GO:0048528: post-embryonic root development	8.96E-03
112	GO:0009772: photosynthetic electron transport in photosystem II	8.96E-03
113	GO:0048437: floral organ development	8.96E-03
114	GO:0032502: developmental process	9.74E-03
115	GO:0006605: protein targeting	1.04E-02
116	GO:0070413: trehalose metabolism in response to stress	1.04E-02
117	GO:2000070: regulation of response to water deprivation	1.04E-02
118	GO:0000105: histidine biosynthetic process	1.04E-02
119	GO:1901657: glycosyl compound metabolic process	1.04E-02
120	GO:0005978: glycogen biosynthetic process	1.04E-02
121	GO:0001522: pseudouridine synthesis	1.04E-02
122	GO:0009657: plastid organization	1.20E-02
123	GO:0009097: isoleucine biosynthetic process	1.20E-02
124	GO:0010100: negative regulation of photomorphogenesis	1.20E-02
125	GO:0032544: plastid translation	1.20E-02
126	GO:0010099: regulation of photomorphogenesis	1.20E-02
127	GO:0015996: chlorophyll catabolic process	1.20E-02
128	GO:0007186: G-protein coupled receptor signaling pathway	1.20E-02
129	GO:0010027: thylakoid membrane organization	1.32E-02
130	GO:0006508: proteolysis	1.35E-02
131	GO:0048507: meristem development	1.36E-02
132	GO:0006783: heme biosynthetic process	1.36E-02
133	GO:0000373: Group II intron splicing	1.36E-02
134	GO:0009835: fruit ripening	1.36E-02
135	GO:0010206: photosystem II repair	1.36E-02
136	GO:0009742: brassinosteroid mediated signaling pathway	1.36E-02
137	GO:0046916: cellular transition metal ion homeostasis	1.36E-02
138	GO:0043067: regulation of programmed cell death	1.54E-02
139	GO:0006779: porphyrin-containing compound biosynthetic process	1.54E-02
140	GO:0009098: leucine biosynthetic process	1.54E-02
141	GO:0048829: root cap development	1.71E-02
142	GO:0016441: posttranscriptional gene silencing	1.71E-02
143	GO:0010162: seed dormancy process	1.71E-02
144	GO:0006782: protoporphyrinogen IX biosynthetic process	1.71E-02
145	GO:0009813: flavonoid biosynthetic process	1.82E-02
146	GO:0048229: gametophyte development	1.90E-02
147	GO:0010015: root morphogenesis	1.90E-02
148	GO:0000038: very long-chain fatty acid metabolic process	1.90E-02
149	GO:0009073: aromatic amino acid family biosynthetic process	1.90E-02
150	GO:0009790: embryo development	2.05E-02
151	GO:0045037: protein import into chloroplast stroma	2.09E-02
152	GO:0012501: programmed cell death	2.09E-02
153	GO:0006865: amino acid transport	2.10E-02
154	GO:0009785: blue light signaling pathway	2.29E-02
155	GO:0050826: response to freezing	2.29E-02
156	GO:0010075: regulation of meristem growth	2.29E-02
157	GO:0009725: response to hormone	2.29E-02
158	GO:0009767: photosynthetic electron transport chain	2.29E-02
159	GO:0007275: multicellular organism development	2.33E-02
160	GO:0009409: response to cold	2.46E-02
161	GO:0009266: response to temperature stimulus	2.50E-02
162	GO:0009934: regulation of meristem structural organization	2.50E-02
163	GO:0010207: photosystem II assembly	2.50E-02
164	GO:0030001: metal ion transport	2.51E-02
165	GO:0006351: transcription, DNA-templated	2.52E-02
166	GO:0009451: RNA modification	2.60E-02
167	GO:0010030: positive regulation of seed germination	2.71E-02
168	GO:0070588: calcium ion transmembrane transport	2.71E-02
169	GO:0000162: tryptophan biosynthetic process	2.93E-02
170	GO:0010025: wax biosynthetic process	2.93E-02
171	GO:0005975: carbohydrate metabolic process	3.10E-02
172	GO:0051017: actin filament bundle assembly	3.15E-02
173	GO:0010187: negative regulation of seed germination	3.15E-02
174	GO:0005992: trehalose biosynthetic process	3.15E-02
175	GO:0006397: mRNA processing	3.23E-02
176	GO:0009793: embryo development ending in seed dormancy	3.33E-02
177	GO:0019953: sexual reproduction	3.38E-02
178	GO:0010026: trichome differentiation	3.38E-02
179	GO:0003333: amino acid transmembrane transport	3.62E-02
180	GO:0048511: rhythmic process	3.62E-02
181	GO:0010431: seed maturation	3.62E-02
182	GO:0061077: chaperone-mediated protein folding	3.62E-02
183	GO:0048278: vesicle docking	3.62E-02
184	GO:0006730: one-carbon metabolic process	3.86E-02
185	GO:0031348: negative regulation of defense response	3.86E-02
186	GO:0009693: ethylene biosynthetic process	4.11E-02
187	GO:0010082: regulation of root meristem growth	4.11E-02
188	GO:0009686: gibberellin biosynthetic process	4.11E-02
189	GO:0016117: carotenoid biosynthetic process	4.61E-02
190	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.61E-02
191	GO:0051028: mRNA transport	4.61E-02
192	GO:0042335: cuticle development	4.88E-02
193	GO:0080022: primary root development	4.88E-02
194	GO:0010501: RNA secondary structure unwinding	4.88E-02
195	GO:0010087: phloem or xylem histogenesis	4.88E-02
196	GO:0010118: stomatal movement	4.88E-02
197	GO:0048653: anther development	4.88E-02
198	GO:0042631: cellular response to water deprivation	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0051060: pullulanase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0015267: channel activity	0.00E+00
6	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
7	GO:0005201: extracellular matrix structural constituent	0.00E+00
8	GO:0004076: biotin synthase activity	0.00E+00
9	GO:0071633: dihydroceramidase activity	0.00E+00
10	GO:0010303: limit dextrinase activity	0.00E+00
11	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
12	GO:0005504: fatty acid binding	4.71E-05
13	GO:0043023: ribosomal large subunit binding	9.96E-05
14	GO:0016279: protein-lysine N-methyltransferase activity	1.71E-04
15	GO:0045430: chalcone isomerase activity	1.71E-04
16	GO:0010313: phytochrome binding	5.68E-04
17	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.68E-04
18	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	5.68E-04
19	GO:0000170: sphingosine hydroxylase activity	5.68E-04
20	GO:0050139: nicotinate-N-glucosyltransferase activity	5.68E-04
21	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	5.68E-04
22	GO:0004425: indole-3-glycerol-phosphate synthase activity	5.68E-04
23	GO:0008184: glycogen phosphorylase activity	5.68E-04
24	GO:0050308: sugar-phosphatase activity	5.68E-04
25	GO:0004134: 4-alpha-glucanotransferase activity	5.68E-04
26	GO:0004645: phosphorylase activity	5.68E-04
27	GO:0009374: biotin binding	5.68E-04
28	GO:0019203: carbohydrate phosphatase activity	5.68E-04
29	GO:0016788: hydrolase activity, acting on ester bonds	8.76E-04
30	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.13E-03
31	GO:0004817: cysteine-tRNA ligase activity	1.22E-03
32	GO:0042284: sphingolipid delta-4 desaturase activity	1.22E-03
33	GO:0008493: tetracycline transporter activity	1.22E-03
34	GO:0004614: phosphoglucomutase activity	1.22E-03
35	GO:0052689: carboxylic ester hydrolase activity	1.57E-03
36	GO:0016805: dipeptidase activity	2.01E-03
37	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.01E-03
38	GO:0004180: carboxypeptidase activity	2.01E-03
39	GO:0070330: aromatase activity	2.01E-03
40	GO:0003774: motor activity	2.64E-03
41	GO:0052656: L-isoleucine transaminase activity	2.92E-03
42	GO:0016851: magnesium chelatase activity	2.92E-03
43	GO:0052654: L-leucine transaminase activity	2.92E-03
44	GO:0052655: L-valine transaminase activity	2.92E-03
45	GO:0001872: (1->3)-beta-D-glucan binding	2.92E-03
46	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	2.92E-03
47	GO:0015238: drug transmembrane transporter activity	3.11E-03
48	GO:0004519: endonuclease activity	3.32E-03
49	GO:0005528: FK506 binding	3.68E-03
50	GO:0046556: alpha-L-arabinofuranosidase activity	3.93E-03
51	GO:0004659: prenyltransferase activity	3.93E-03
52	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.93E-03
53	GO:0004084: branched-chain-amino-acid transaminase activity	3.93E-03
54	GO:0005345: purine nucleobase transmembrane transporter activity	4.06E-03
55	GO:0004176: ATP-dependent peptidase activity	4.47E-03
56	GO:0018685: alkane 1-monooxygenase activity	5.05E-03
57	GO:0003989: acetyl-CoA carboxylase activity	5.05E-03
58	GO:0008810: cellulase activity	5.34E-03
59	GO:0003727: single-stranded RNA binding	5.81E-03
60	GO:0005215: transporter activity	6.22E-03
61	GO:2001070: starch binding	6.26E-03
62	GO:0080030: methyl indole-3-acetate esterase activity	6.26E-03
63	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.26E-03
64	GO:0004556: alpha-amylase activity	6.26E-03
65	GO:0016208: AMP binding	6.26E-03
66	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	7.56E-03
67	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.56E-03
68	GO:0016832: aldehyde-lyase activity	7.56E-03
69	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.04E-02
70	GO:0003723: RNA binding	1.08E-02
71	GO:0008237: metallopeptidase activity	1.18E-02
72	GO:0008173: RNA methyltransferase activity	1.20E-02
73	GO:0003724: RNA helicase activity	1.20E-02
74	GO:0046914: transition metal ion binding	1.20E-02
75	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.36E-02
76	GO:0102483: scopolin beta-glucosidase activity	1.56E-02
77	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.74E-02
78	GO:0044183: protein binding involved in protein folding	1.90E-02
79	GO:0047372: acylglycerol lipase activity	1.90E-02
80	GO:0030170: pyridoxal phosphate binding	1.92E-02
81	GO:0015266: protein channel activity	2.29E-02
82	GO:0004089: carbonate dehydratase activity	2.29E-02
83	GO:0005262: calcium channel activity	2.29E-02
84	GO:0009982: pseudouridine synthase activity	2.29E-02
85	GO:0015297: antiporter activity	2.38E-02
86	GO:0004871: signal transducer activity	2.39E-02
87	GO:0008422: beta-glucosidase activity	2.40E-02
88	GO:0008266: poly(U) RNA binding	2.50E-02
89	GO:0008146: sulfotransferase activity	2.71E-02
90	GO:0004190: aspartic-type endopeptidase activity	2.71E-02
91	GO:0003712: transcription cofactor activity	2.71E-02
92	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.93E-02
93	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.93E-02
94	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.93E-02
95	GO:0035091: phosphatidylinositol binding	3.07E-02
96	GO:0051536: iron-sulfur cluster binding	3.15E-02
97	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.31E-02
98	GO:0033612: receptor serine/threonine kinase binding	3.62E-02
99	GO:0003824: catalytic activity	3.95E-02
100	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.02E-02
101	GO:0030246: carbohydrate binding	4.15E-02
102	GO:0003777: microtubule motor activity	4.23E-02
103	GO:0015171: amino acid transmembrane transporter activity	4.23E-02
104	GO:0047134: protein-disulfide reductase activity	4.61E-02
105	GO:0008289: lipid binding	4.89E-02
106	GO:0004650: polygalacturonase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	1.74E-11
2	GO:0009507: chloroplast	4.43E-11
3	GO:0009508: plastid chromosome	2.21E-04
4	GO:0009295: nucleoid	2.55E-04
5	GO:0009534: chloroplast thylakoid	4.62E-04
6	GO:0009941: chloroplast envelope	8.92E-04
7	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.22E-03
8	GO:0016459: myosin complex	1.55E-03
9	GO:0010319: stromule	1.79E-03
10	GO:0009317: acetyl-CoA carboxylase complex	2.01E-03
11	GO:0009528: plastid inner membrane	2.01E-03
12	GO:0019897: extrinsic component of plasma membrane	2.01E-03
13	GO:0010007: magnesium chelatase complex	2.01E-03
14	GO:0005886: plasma membrane	2.21E-03
15	GO:0046658: anchored component of plasma membrane	2.48E-03
16	GO:0009543: chloroplast thylakoid lumen	3.87E-03
17	GO:0009544: chloroplast ATP synthase complex	3.93E-03
18	GO:0009527: plastid outer membrane	3.93E-03
19	GO:0009654: photosystem II oxygen evolving complex	4.06E-03
20	GO:0015629: actin cytoskeleton	5.34E-03
21	GO:0031225: anchored component of membrane	7.49E-03
22	GO:0019898: extrinsic component of membrane	8.50E-03
23	GO:0009501: amyloplast	1.04E-02
24	GO:0010494: cytoplasmic stress granule	1.36E-02
25	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.36E-02
26	GO:0031969: chloroplast membrane	1.70E-02
27	GO:0000418: DNA-directed RNA polymerase IV complex	1.71E-02
28	GO:0009707: chloroplast outer membrane	1.73E-02
29	GO:0090404: pollen tube tip	1.90E-02
30	GO:0005578: proteinaceous extracellular matrix	2.29E-02
31	GO:0030095: chloroplast photosystem II	2.50E-02
32	GO:0031977: thylakoid lumen	2.62E-02
33	GO:0009579: thylakoid	3.42E-02
34	GO:0043231: intracellular membrane-bounded organelle	3.50E-02
35	GO:0009532: plastid stroma	3.62E-02
36	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.36E-02
37	GO:0005871: kinesin complex	4.61E-02