co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0019323: pentose catabolic process	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0009733: response to auxin	2.20E-06
6	GO:0040008: regulation of growth	4.44E-06
7	GO:0009734: auxin-activated signaling pathway	7.98E-06
8	GO:0046620: regulation of organ growth	1.04E-05
9	GO:0015995: chlorophyll biosynthetic process	1.05E-04
10	GO:0030488: tRNA methylation	2.18E-04
11	GO:1902458: positive regulation of stomatal opening	3.34E-04
12	GO:0015904: tetracycline transport	3.34E-04
13	GO:0000025: maltose catabolic process	3.34E-04
14	GO:0070509: calcium ion import	3.34E-04
15	GO:0044262: cellular carbohydrate metabolic process	3.34E-04
16	GO:0010480: microsporocyte differentiation	3.34E-04
17	GO:0042759: long-chain fatty acid biosynthetic process	3.34E-04
18	GO:0009828: plant-type cell wall loosening	6.11E-04
19	GO:0009638: phototropism	6.19E-04
20	GO:0006779: porphyrin-containing compound biosynthetic process	6.19E-04
21	GO:1900865: chloroplast RNA modification	6.19E-04
22	GO:0009641: shade avoidance	7.22E-04
23	GO:0006782: protoporphyrinogen IX biosynthetic process	7.22E-04
24	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.29E-04
25	GO:2000123: positive regulation of stomatal complex development	7.29E-04
26	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.29E-04
27	GO:1900871: chloroplast mRNA modification	7.29E-04
28	GO:0061062: regulation of nematode larval development	7.29E-04
29	GO:0009786: regulation of asymmetric cell division	7.29E-04
30	GO:0031648: protein destabilization	7.29E-04
31	GO:2000012: regulation of auxin polar transport	1.07E-03
32	GO:0080055: low-affinity nitrate transport	1.18E-03
33	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.23E-03
34	GO:0070588: calcium ion transmembrane transport	1.35E-03
35	GO:0010025: wax biosynthetic process	1.50E-03
36	GO:0051513: regulation of monopolar cell growth	1.70E-03
37	GO:0007231: osmosensory signaling pathway	1.70E-03
38	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.70E-03
39	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.70E-03
40	GO:0009926: auxin polar transport	1.98E-03
41	GO:0009765: photosynthesis, light harvesting	2.28E-03
42	GO:0033500: carbohydrate homeostasis	2.28E-03
43	GO:2000038: regulation of stomatal complex development	2.28E-03
44	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.41E-03
45	GO:0009664: plant-type cell wall organization	2.64E-03
46	GO:0016123: xanthophyll biosynthetic process	2.91E-03
47	GO:0010375: stomatal complex patterning	2.91E-03
48	GO:0016120: carotene biosynthetic process	2.91E-03
49	GO:0000304: response to singlet oxygen	2.91E-03
50	GO:0045038: protein import into chloroplast thylakoid membrane	2.91E-03
51	GO:0048497: maintenance of floral organ identity	2.91E-03
52	GO:0009826: unidimensional cell growth	3.42E-03
53	GO:0007275: multicellular organism development	3.58E-03
54	GO:0010405: arabinogalactan protein metabolic process	3.60E-03
55	GO:0016554: cytidine to uridine editing	3.60E-03
56	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.60E-03
57	GO:0009913: epidermal cell differentiation	3.60E-03
58	GO:1902456: regulation of stomatal opening	3.60E-03
59	GO:0071554: cell wall organization or biogenesis	4.08E-03
60	GO:0032502: developmental process	4.35E-03
61	GO:0009742: brassinosteroid mediated signaling pathway	4.88E-03
62	GO:0048528: post-embryonic root development	5.11E-03
63	GO:0048437: floral organ development	5.11E-03
64	GO:0010444: guard mother cell differentiation	5.11E-03
65	GO:0030307: positive regulation of cell growth	5.11E-03
66	GO:0015693: magnesium ion transport	5.11E-03
67	GO:0007267: cell-cell signaling	5.25E-03
68	GO:0009793: embryo development ending in seed dormancy	5.25E-03
69	GO:0010027: thylakoid membrane organization	5.89E-03
70	GO:2000070: regulation of response to water deprivation	5.94E-03
71	GO:0045892: negative regulation of transcription, DNA-templated	6.77E-03
72	GO:0015996: chlorophyll catabolic process	6.81E-03
73	GO:0007186: G-protein coupled receptor signaling pathway	6.81E-03
74	GO:0009657: plastid organization	6.81E-03
75	GO:0006526: arginine biosynthetic process	6.81E-03
76	GO:0051865: protein autoubiquitination	7.73E-03
77	GO:0042761: very long-chain fatty acid biosynthetic process	8.68E-03
78	GO:0016042: lipid catabolic process	8.70E-03
79	GO:0006949: syncytium formation	9.69E-03
80	GO:0009299: mRNA transcription	9.69E-03
81	GO:0048829: root cap development	9.69E-03
82	GO:0006816: calcium ion transport	1.07E-02
83	GO:0008285: negative regulation of cell proliferation	1.07E-02
84	GO:0006415: translational termination	1.07E-02
85	GO:0009073: aromatic amino acid family biosynthetic process	1.07E-02
86	GO:0048229: gametophyte development	1.07E-02
87	GO:0006631: fatty acid metabolic process	1.16E-02
88	GO:0012501: programmed cell death	1.18E-02
89	GO:0005983: starch catabolic process	1.18E-02
90	GO:0045037: protein import into chloroplast stroma	1.18E-02
91	GO:0050826: response to freezing	1.29E-02
92	GO:0010075: regulation of meristem growth	1.29E-02
93	GO:0009725: response to hormone	1.29E-02
94	GO:0010588: cotyledon vascular tissue pattern formation	1.29E-02
95	GO:0010102: lateral root morphogenesis	1.29E-02
96	GO:0009785: blue light signaling pathway	1.29E-02
97	GO:0006006: glucose metabolic process	1.29E-02
98	GO:0009934: regulation of meristem structural organization	1.41E-02
99	GO:0010207: photosystem II assembly	1.41E-02
100	GO:0090351: seedling development	1.53E-02
101	GO:0048366: leaf development	1.95E-02
102	GO:0048511: rhythmic process	2.03E-02
103	GO:0031408: oxylipin biosynthetic process	2.03E-02
104	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.17E-02
105	GO:0010082: regulation of root meristem growth	2.31E-02
106	GO:0009294: DNA mediated transformation	2.31E-02
107	GO:0009624: response to nematode	2.43E-02
108	GO:0006284: base-excision repair	2.45E-02
109	GO:0019722: calcium-mediated signaling	2.45E-02
110	GO:0006396: RNA processing	2.51E-02
111	GO:0016117: carotenoid biosynthetic process	2.60E-02
112	GO:0010118: stomatal movement	2.74E-02
113	GO:0048653: anther development	2.74E-02
114	GO:0080022: primary root development	2.74E-02
115	GO:0000413: protein peptidyl-prolyl isomerization	2.74E-02
116	GO:0010087: phloem or xylem histogenesis	2.74E-02
117	GO:0006351: transcription, DNA-templated	2.76E-02
118	GO:0010305: leaf vascular tissue pattern formation	2.89E-02
119	GO:0006520: cellular amino acid metabolic process	2.89E-02
120	GO:0010182: sugar mediated signaling pathway	2.89E-02
121	GO:0007165: signal transduction	2.90E-02
122	GO:0007018: microtubule-based movement	3.05E-02
123	GO:0042752: regulation of circadian rhythm	3.05E-02
124	GO:0048544: recognition of pollen	3.05E-02
125	GO:0048825: cotyledon development	3.20E-02
126	GO:0009058: biosynthetic process	3.21E-02
127	GO:0010583: response to cyclopentenone	3.52E-02
128	GO:0016032: viral process	3.52E-02
129	GO:0030163: protein catabolic process	3.69E-02
130	GO:0006464: cellular protein modification process	3.85E-02
131	GO:0051607: defense response to virus	4.19E-02
132	GO:0045490: pectin catabolic process	4.19E-02
133	GO:0005975: carbohydrate metabolic process	4.27E-02
134	GO:0007166: cell surface receptor signaling pathway	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.34E-04
5	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.34E-04
6	GO:0050139: nicotinate-N-glucosyltransferase activity	3.34E-04
7	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.34E-04
8	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	3.34E-04
9	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.34E-04
10	GO:0005227: calcium activated cation channel activity	3.34E-04
11	GO:0004134: 4-alpha-glucanotransferase activity	3.34E-04
12	GO:0043425: bHLH transcription factor binding	7.29E-04
13	GO:0004750: ribulose-phosphate 3-epimerase activity	7.29E-04
14	GO:0008805: carbon-monoxide oxygenase activity	7.29E-04
15	GO:0008493: tetracycline transporter activity	7.29E-04
16	GO:0017118: lipoyltransferase activity	7.29E-04
17	GO:0005262: calcium channel activity	1.07E-03
18	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.18E-03
19	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.18E-03
20	GO:0003913: DNA photolyase activity	1.18E-03
21	GO:0005504: fatty acid binding	1.18E-03
22	GO:0001872: (1->3)-beta-D-glucan binding	1.70E-03
23	GO:0016851: magnesium chelatase activity	1.70E-03
24	GO:0016149: translation release factor activity, codon specific	1.70E-03
25	GO:0004871: signal transducer activity	1.73E-03
26	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.28E-03
27	GO:0019199: transmembrane receptor protein kinase activity	2.28E-03
28	GO:0045430: chalcone isomerase activity	2.28E-03
29	GO:0030570: pectate lyase activity	2.41E-03
30	GO:0008725: DNA-3-methyladenine glycosylase activity	2.91E-03
31	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.60E-03
32	GO:0046983: protein dimerization activity	4.29E-03
33	GO:0051753: mannan synthase activity	4.33E-03
34	GO:0009881: photoreceptor activity	5.11E-03
35	GO:0016413: O-acetyltransferase activity	5.57E-03
36	GO:0008173: RNA methyltransferase activity	6.81E-03
37	GO:0003747: translation release factor activity	7.73E-03
38	GO:0009055: electron carrier activity	1.01E-02
39	GO:0047372: acylglycerol lipase activity	1.07E-02
40	GO:0015095: magnesium ion transmembrane transporter activity	1.29E-02
41	GO:0031072: heat shock protein binding	1.29E-02
42	GO:0004565: beta-galactosidase activity	1.29E-02
43	GO:0003725: double-stranded RNA binding	1.29E-02
44	GO:0008266: poly(U) RNA binding	1.41E-02
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.48E-02
46	GO:0004190: aspartic-type endopeptidase activity	1.53E-02
47	GO:0008146: sulfotransferase activity	1.53E-02
48	GO:0003712: transcription cofactor activity	1.53E-02
49	GO:0051536: iron-sulfur cluster binding	1.77E-02
50	GO:0005528: FK506 binding	1.77E-02
51	GO:0003777: microtubule motor activity	1.89E-02
52	GO:0043424: protein histidine kinase binding	1.90E-02
53	GO:0005345: purine nucleobase transmembrane transporter activity	1.90E-02
54	GO:0004176: ATP-dependent peptidase activity	2.03E-02
55	GO:0033612: receptor serine/threonine kinase binding	2.03E-02
56	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.09E-02
57	GO:0004650: polygalacturonase activity	2.22E-02
58	GO:0052689: carboxylic ester hydrolase activity	2.36E-02
59	GO:0003727: single-stranded RNA binding	2.45E-02
60	GO:0003756: protein disulfide isomerase activity	2.45E-02
61	GO:0015035: protein disulfide oxidoreductase activity	2.51E-02
62	GO:0004674: protein serine/threonine kinase activity	2.94E-02
63	GO:0016853: isomerase activity	3.05E-02
64	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.13E-02
65	GO:0019901: protein kinase binding	3.20E-02
66	GO:0016829: lyase activity	3.30E-02
67	GO:0004518: nuclease activity	3.52E-02
68	GO:0000156: phosphorelay response regulator activity	3.69E-02
69	GO:0003723: RNA binding	3.86E-02
70	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.91E-02
71	GO:0008483: transaminase activity	4.02E-02
72	GO:0008237: metallopeptidase activity	4.02E-02
73	GO:0005200: structural constituent of cytoskeleton	4.02E-02
74	GO:0016597: amino acid binding	4.19E-02
75	GO:0008017: microtubule binding	4.39E-02
76	GO:0030247: polysaccharide binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	5.80E-06
2	GO:0009507: chloroplast	1.96E-05
3	GO:0009941: chloroplast envelope	9.48E-05
4	GO:0009570: chloroplast stroma	3.64E-04
5	GO:0010319: stromule	6.60E-04
6	GO:0009528: plastid inner membrane	1.18E-03
7	GO:0019897: extrinsic component of plasma membrane	1.18E-03
8	GO:0010007: magnesium chelatase complex	1.18E-03
9	GO:0030139: endocytic vesicle	1.18E-03
10	GO:0032585: multivesicular body membrane	1.70E-03
11	GO:0009527: plastid outer membrane	2.28E-03
12	GO:0005886: plasma membrane	3.50E-03
13	GO:0009535: chloroplast thylakoid membrane	4.86E-03
14	GO:0009986: cell surface	5.11E-03
15	GO:0009533: chloroplast stromal thylakoid	5.11E-03
16	GO:0009501: amyloplast	5.94E-03
17	GO:0009543: chloroplast thylakoid lumen	6.03E-03
18	GO:0090404: pollen tube tip	1.07E-02
19	GO:0031977: thylakoid lumen	1.16E-02
20	GO:0005578: proteinaceous extracellular matrix	1.29E-02
21	GO:0009508: plastid chromosome	1.29E-02
22	GO:0030095: chloroplast photosystem II	1.41E-02
23	GO:0043234: protein complex	1.65E-02
24	GO:0009654: photosystem II oxygen evolving complex	1.90E-02
25	GO:0009532: plastid stroma	2.03E-02
26	GO:0031969: chloroplast membrane	2.08E-02
27	GO:0015629: actin cytoskeleton	2.31E-02
28	GO:0005871: kinesin complex	2.60E-02
29	GO:0009579: thylakoid	2.81E-02
30	GO:0019898: extrinsic component of membrane	3.20E-02
31	GO:0009295: nucleoid	4.02E-02
32	GO:0030529: intracellular ribonucleoprotein complex	4.37E-02