Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G18360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905157: positive regulation of photosynthesis0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0015995: chlorophyll biosynthetic process6.73E-09
8GO:0009773: photosynthetic electron transport in photosystem I1.22E-08
9GO:0015979: photosynthesis4.23E-08
10GO:0030388: fructose 1,6-bisphosphate metabolic process4.70E-06
11GO:0032544: plastid translation1.35E-05
12GO:0006000: fructose metabolic process1.67E-05
13GO:0055114: oxidation-reduction process3.76E-05
14GO:0005983: starch catabolic process5.20E-05
15GO:0015994: chlorophyll metabolic process6.61E-05
16GO:0006636: unsaturated fatty acid biosynthetic process1.09E-04
17GO:1901259: chloroplast rRNA processing2.05E-04
18GO:0010196: nonphotochemical quenching2.67E-04
19GO:0019276: UDP-N-acetylgalactosamine metabolic process3.22E-04
20GO:0010028: xanthophyll cycle3.22E-04
21GO:0034337: RNA folding3.22E-04
22GO:0000023: maltose metabolic process3.22E-04
23GO:0006047: UDP-N-acetylglucosamine metabolic process3.22E-04
24GO:0000025: maltose catabolic process3.22E-04
25GO:0005980: glycogen catabolic process3.22E-04
26GO:0000476: maturation of 4.5S rRNA3.22E-04
27GO:0000967: rRNA 5'-end processing3.22E-04
28GO:0009090: homoserine biosynthetic process3.22E-04
29GO:0009642: response to light intensity3.36E-04
30GO:0006002: fructose 6-phosphate metabolic process4.12E-04
31GO:0010206: photosystem II repair4.95E-04
32GO:0005982: starch metabolic process5.85E-04
33GO:0010353: response to trehalose7.02E-04
34GO:0016122: xanthophyll metabolic process7.02E-04
35GO:0010270: photosystem II oxygen evolving complex assembly7.02E-04
36GO:0034470: ncRNA processing7.02E-04
37GO:0006898: receptor-mediated endocytosis7.02E-04
38GO:0005976: polysaccharide metabolic process7.02E-04
39GO:0010027: thylakoid membrane organization7.12E-04
40GO:0043085: positive regulation of catalytic activity7.88E-04
41GO:0006094: gluconeogenesis1.02E-03
42GO:0005986: sucrose biosynthetic process1.02E-03
43GO:0006696: ergosterol biosynthetic process1.14E-03
44GO:0009405: pathogenesis1.14E-03
45GO:0010207: photosystem II assembly1.14E-03
46GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.14E-03
47GO:0090391: granum assembly1.14E-03
48GO:0006518: peptide metabolic process1.14E-03
49GO:0006633: fatty acid biosynthetic process1.47E-03
50GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.63E-03
51GO:0009067: aspartate family amino acid biosynthetic process1.63E-03
52GO:1902358: sulfate transmembrane transport1.63E-03
53GO:0045338: farnesyl diphosphate metabolic process1.63E-03
54GO:0006020: inositol metabolic process1.63E-03
55GO:0071484: cellular response to light intensity1.63E-03
56GO:0051085: chaperone mediated protein folding requiring cofactor1.63E-03
57GO:0009768: photosynthesis, light harvesting in photosystem I1.74E-03
58GO:0006418: tRNA aminoacylation for protein translation1.74E-03
59GO:0010114: response to red light1.84E-03
60GO:0061077: chaperone-mediated protein folding1.91E-03
61GO:0071483: cellular response to blue light2.19E-03
62GO:0010021: amylopectin biosynthetic process2.19E-03
63GO:0006109: regulation of carbohydrate metabolic process2.19E-03
64GO:0045727: positive regulation of translation2.19E-03
65GO:0006021: inositol biosynthetic process2.19E-03
66GO:0006364: rRNA processing2.69E-03
67GO:0009904: chloroplast accumulation movement2.80E-03
68GO:0006656: phosphatidylcholine biosynthetic process2.80E-03
69GO:0006662: glycerol ether metabolic process3.12E-03
70GO:0042254: ribosome biogenesis3.41E-03
71GO:0009643: photosynthetic acclimation3.46E-03
72GO:0010304: PSII associated light-harvesting complex II catabolic process3.46E-03
73GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.46E-03
74GO:0006828: manganese ion transport3.46E-03
75GO:1902456: regulation of stomatal opening3.46E-03
76GO:0010190: cytochrome b6f complex assembly3.46E-03
77GO:0046855: inositol phosphate dephosphorylation3.46E-03
78GO:0019252: starch biosynthetic process3.60E-03
79GO:0009903: chloroplast avoidance movement4.17E-03
80GO:0009854: oxidative photosynthetic carbon pathway4.17E-03
81GO:0009088: threonine biosynthetic process4.17E-03
82GO:0009955: adaxial/abaxial pattern specification4.17E-03
83GO:0042026: protein refolding4.17E-03
84GO:0009610: response to symbiotic fungus4.92E-03
85GO:0009772: photosynthetic electron transport in photosystem II4.92E-03
86GO:0008272: sulfate transport4.92E-03
87GO:0005978: glycogen biosynthetic process5.71E-03
88GO:0030091: protein repair5.71E-03
89GO:0006353: DNA-templated transcription, termination5.71E-03
90GO:0015996: chlorophyll catabolic process6.55E-03
91GO:0009657: plastid organization6.55E-03
92GO:0016311: dephosphorylation6.91E-03
93GO:0006783: heme biosynthetic process7.42E-03
94GO:0006754: ATP biosynthetic process7.42E-03
95GO:0009813: flavonoid biosynthetic process7.64E-03
96GO:0032259: methylation7.80E-03
97GO:0010205: photoinhibition8.34E-03
98GO:0009086: methionine biosynthetic process8.34E-03
99GO:0009631: cold acclimation8.41E-03
100GO:0009641: shade avoidance9.30E-03
101GO:0006782: protoporphyrinogen IX biosynthetic process9.30E-03
102GO:0034599: cellular response to oxidative stress9.65E-03
103GO:0000272: polysaccharide catabolic process1.03E-02
104GO:0009750: response to fructose1.03E-02
105GO:0018119: peptidyl-cysteine S-nitrosylation1.03E-02
106GO:0006816: calcium ion transport1.03E-02
107GO:0009089: lysine biosynthetic process via diaminopimelate1.03E-02
108GO:0006415: translational termination1.03E-02
109GO:0006790: sulfur compound metabolic process1.13E-02
110GO:0009409: response to cold1.15E-02
111GO:0018107: peptidyl-threonine phosphorylation1.24E-02
112GO:0006810: transport1.34E-02
113GO:0007015: actin filament organization1.35E-02
114GO:0010223: secondary shoot formation1.35E-02
115GO:0009266: response to temperature stimulus1.35E-02
116GO:0019253: reductive pentose-phosphate cycle1.35E-02
117GO:0046854: phosphatidylinositol phosphorylation1.46E-02
118GO:0005985: sucrose metabolic process1.46E-02
119GO:0009658: chloroplast organization1.48E-02
120GO:0006813: potassium ion transport1.61E-02
121GO:0051017: actin filament bundle assembly1.70E-02
122GO:0009735: response to cytokinin1.73E-02
123GO:0051260: protein homooligomerization1.95E-02
124GO:0016114: terpenoid biosynthetic process1.95E-02
125GO:0030433: ubiquitin-dependent ERAD pathway2.08E-02
126GO:0007005: mitochondrion organization2.08E-02
127GO:0019748: secondary metabolic process2.08E-02
128GO:0016226: iron-sulfur cluster assembly2.08E-02
129GO:0035428: hexose transmembrane transport2.08E-02
130GO:0009306: protein secretion2.35E-02
131GO:0006396: RNA processing2.37E-02
132GO:0045454: cell redox homeostasis2.43E-02
133GO:0016117: carotenoid biosynthetic process2.49E-02
134GO:0070417: cellular response to cold2.49E-02
135GO:0042631: cellular response to water deprivation2.63E-02
136GO:0046323: glucose import2.78E-02
137GO:0009741: response to brassinosteroid2.78E-02
138GO:0015986: ATP synthesis coupled proton transport2.92E-02
139GO:0006412: translation2.93E-02
140GO:0032502: developmental process3.38E-02
141GO:0009630: gravitropism3.38E-02
142GO:1901657: glycosyl compound metabolic process3.54E-02
143GO:0008152: metabolic process3.56E-02
144GO:0016126: sterol biosynthetic process4.19E-02
145GO:0009627: systemic acquired resistance4.53E-02
146GO:0006906: vesicle fusion4.53E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
3GO:0047668: amygdalin beta-glucosidase activity0.00E+00
4GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
5GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
6GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
7GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
8GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
9GO:0090711: FMN hydrolase activity0.00E+00
10GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
11GO:0046422: violaxanthin de-epoxidase activity0.00E+00
12GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
13GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
14GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
15GO:0004567: beta-mannosidase activity0.00E+00
16GO:0008887: glycerate kinase activity0.00E+00
17GO:0004822: isoleucine-tRNA ligase activity0.00E+00
18GO:0080082: esculin beta-glucosidase activity0.00E+00
19GO:0019843: rRNA binding4.09E-09
20GO:0010297: heteropolysaccharide binding4.70E-06
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.70E-06
22GO:0005528: FK506 binding4.94E-06
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.64E-05
24GO:0016491: oxidoreductase activity9.95E-05
25GO:0034256: chlorophyll(ide) b reductase activity3.22E-04
26GO:0045486: naringenin 3-dioxygenase activity3.22E-04
27GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity3.22E-04
28GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.22E-04
29GO:0080079: cellobiose glucosidase activity3.22E-04
30GO:0050521: alpha-glucan, water dikinase activity3.22E-04
31GO:0008184: glycogen phosphorylase activity3.22E-04
32GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.22E-04
33GO:0004134: 4-alpha-glucanotransferase activity3.22E-04
34GO:0004645: phosphorylase activity3.22E-04
35GO:0004853: uroporphyrinogen decarboxylase activity3.22E-04
36GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity3.22E-04
37GO:0045485: omega-6 fatty acid desaturase activity3.22E-04
38GO:0008047: enzyme activator activity6.82E-04
39GO:0008967: phosphoglycolate phosphatase activity7.02E-04
40GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.02E-04
41GO:0000234: phosphoethanolamine N-methyltransferase activity7.02E-04
42GO:0047746: chlorophyllase activity7.02E-04
43GO:0042389: omega-3 fatty acid desaturase activity7.02E-04
44GO:0052832: inositol monophosphate 3-phosphatase activity7.02E-04
45GO:0033201: alpha-1,4-glucan synthase activity7.02E-04
46GO:0008934: inositol monophosphate 1-phosphatase activity7.02E-04
47GO:0018708: thiol S-methyltransferase activity7.02E-04
48GO:0003844: 1,4-alpha-glucan branching enzyme activity7.02E-04
49GO:0052833: inositol monophosphate 4-phosphatase activity7.02E-04
50GO:0016630: protochlorophyllide reductase activity7.02E-04
51GO:0004412: homoserine dehydrogenase activity7.02E-04
52GO:0044183: protein binding involved in protein folding7.88E-04
53GO:0015386: potassium:proton antiporter activity7.88E-04
54GO:0010277: chlorophyllide a oxygenase [overall] activity1.14E-03
55GO:0043169: cation binding1.14E-03
56GO:0004373: glycogen (starch) synthase activity1.14E-03
57GO:0002161: aminoacyl-tRNA editing activity1.14E-03
58GO:0090729: toxin activity1.14E-03
59GO:0031409: pigment binding1.42E-03
60GO:0004072: aspartate kinase activity1.63E-03
61GO:0019201: nucleotide kinase activity1.63E-03
62GO:0016149: translation release factor activity, codon specific1.63E-03
63GO:0016851: magnesium chelatase activity1.63E-03
64GO:0022890: inorganic cation transmembrane transporter activity1.63E-03
65GO:0015079: potassium ion transmembrane transporter activity1.74E-03
66GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.19E-03
67GO:0045430: chalcone isomerase activity2.19E-03
68GO:0009011: starch synthase activity2.19E-03
69GO:0047134: protein-disulfide reductase activity2.68E-03
70GO:0004812: aminoacyl-tRNA ligase activity2.68E-03
71GO:0003959: NADPH dehydrogenase activity2.80E-03
72GO:0003735: structural constituent of ribosome3.20E-03
73GO:0004791: thioredoxin-disulfide reductase activity3.35E-03
74GO:0008200: ion channel inhibitor activity3.46E-03
75GO:2001070: starch binding3.46E-03
76GO:0048038: quinone binding3.85E-03
77GO:0004602: glutathione peroxidase activity4.17E-03
78GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.17E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.17E-03
80GO:0004017: adenylate kinase activity4.17E-03
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.38E-03
82GO:0004525: ribonuclease III activity5.71E-03
83GO:0004033: aldo-keto reductase (NADP) activity5.71E-03
84GO:0016168: chlorophyll binding5.89E-03
85GO:0008271: secondary active sulfate transmembrane transporter activity6.55E-03
86GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.55E-03
87GO:0003747: translation release factor activity7.42E-03
88GO:0071949: FAD binding7.42E-03
89GO:0004222: metalloendopeptidase activity8.02E-03
90GO:0005384: manganese ion transmembrane transporter activity8.34E-03
91GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.34E-03
92GO:0030234: enzyme regulator activity9.30E-03
93GO:0003993: acid phosphatase activity9.65E-03
94GO:0015116: sulfate transmembrane transporter activity1.13E-02
95GO:0000049: tRNA binding1.13E-02
96GO:0015095: magnesium ion transmembrane transporter activity1.24E-02
97GO:0031072: heat shock protein binding1.24E-02
98GO:0004022: alcohol dehydrogenase (NAD) activity1.24E-02
99GO:0051537: 2 iron, 2 sulfur cluster binding1.29E-02
100GO:0043621: protein self-association1.29E-02
101GO:0008266: poly(U) RNA binding1.35E-02
102GO:0008168: methyltransferase activity1.41E-02
103GO:0051536: iron-sulfur cluster binding1.70E-02
104GO:0031418: L-ascorbic acid binding1.70E-02
105GO:0004857: enzyme inhibitor activity1.70E-02
106GO:0016779: nucleotidyltransferase activity2.08E-02
107GO:0051082: unfolded protein binding2.30E-02
108GO:0003727: single-stranded RNA binding2.35E-02
109GO:0015035: protein disulfide oxidoreductase activity2.37E-02
110GO:0005249: voltage-gated potassium channel activity2.63E-02
111GO:0016787: hydrolase activity2.74E-02
112GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.78E-02
113GO:0015299: solute:proton antiporter activity2.92E-02
114GO:0005355: glucose transmembrane transporter activity2.92E-02
115GO:0050662: coenzyme binding2.92E-02
116GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.95E-02
117GO:0051015: actin filament binding3.54E-02
118GO:0008237: metallopeptidase activity3.86E-02
119GO:0016597: amino acid binding4.03E-02
120GO:0102483: scopolin beta-glucosidase activity4.71E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast1.68E-69
4GO:0009535: chloroplast thylakoid membrane6.46E-42
5GO:0009534: chloroplast thylakoid2.75E-38
6GO:0009941: chloroplast envelope8.12E-27
7GO:0009570: chloroplast stroma1.93E-25
8GO:0009579: thylakoid1.87E-13
9GO:0009543: chloroplast thylakoid lumen2.39E-13
10GO:0031969: chloroplast membrane4.44E-12
11GO:0031977: thylakoid lumen4.59E-11
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.71E-09
13GO:0042651: thylakoid membrane1.47E-04
14GO:0010287: plastoglobule1.56E-04
15GO:0009515: granal stacked thylakoid3.22E-04
16GO:0009547: plastid ribosome3.22E-04
17GO:0009501: amyloplast3.36E-04
18GO:0010319: stromule6.14E-04
19GO:0005840: ribosome6.94E-04
20GO:0000427: plastid-encoded plastid RNA polymerase complex7.02E-04
21GO:0031357: integral component of chloroplast inner membrane7.02E-04
22GO:0030095: chloroplast photosystem II1.14E-03
23GO:0010007: magnesium chelatase complex1.14E-03
24GO:0030076: light-harvesting complex1.28E-03
25GO:0008076: voltage-gated potassium channel complex1.63E-03
26GO:0009654: photosystem II oxygen evolving complex1.74E-03
27GO:0009544: chloroplast ATP synthase complex2.19E-03
28GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.46E-03
29GO:0019898: extrinsic component of membrane3.60E-03
30GO:0009840: chloroplastic endopeptidase Clp complex4.17E-03
31GO:0009706: chloroplast inner membrane4.21E-03
32GO:0031982: vesicle5.71E-03
33GO:0005763: mitochondrial small ribosomal subunit7.42E-03
34GO:0031901: early endosome membrane7.42E-03
35GO:0000311: plastid large ribosomal subunit1.13E-02
36GO:0032040: small-subunit processome1.13E-02
37GO:0022626: cytosolic ribosome1.85E-02
38GO:0015935: small ribosomal subunit1.95E-02
39GO:0009532: plastid stroma1.95E-02
40GO:0015629: actin cytoskeleton2.22E-02
41GO:0009522: photosystem I2.92E-02
42GO:0005623: cell2.95E-02
43GO:0016020: membrane3.18E-02
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Gene type



Gene DE type