co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
2	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
3	GO:0006426: glycyl-tRNA aminoacylation	4.88E-05
4	GO:0043686: co-translational protein modification	4.88E-05
5	GO:0005983: starch catabolic process	6.18E-05
6	GO:0080005: photosystem stoichiometry adjustment	1.20E-04
7	GO:0031648: protein destabilization	1.20E-04
8	GO:0043039: tRNA aminoacylation	1.20E-04
9	GO:0006518: peptide metabolic process	2.06E-04
10	GO:0006424: glutamyl-tRNA aminoacylation	3.01E-04
11	GO:0007276: gamete generation	3.01E-04
12	GO:0048629: trichome patterning	4.04E-04
13	GO:0031365: N-terminal protein amino acid modification	5.13E-04
14	GO:0009082: branched-chain amino acid biosynthetic process	7.50E-04
15	GO:0009099: valine biosynthetic process	7.50E-04
16	GO:0045995: regulation of embryonic development	8.75E-04
17	GO:0010492: maintenance of shoot apical meristem identity	1.01E-03
18	GO:0009231: riboflavin biosynthetic process	1.01E-03
19	GO:0042255: ribosome assembly	1.01E-03
20	GO:0006353: DNA-templated transcription, termination	1.01E-03
21	GO:0009097: isoleucine biosynthetic process	1.14E-03
22	GO:0009657: plastid organization	1.14E-03
23	GO:0051865: protein autoubiquitination	1.28E-03
24	GO:0005982: starch metabolic process	1.43E-03
25	GO:0010629: negative regulation of gene expression	1.59E-03
26	GO:0009767: photosynthetic electron transport chain	2.08E-03
27	GO:0009887: animal organ morphogenesis	2.26E-03
28	GO:0006302: double-strand break repair	2.26E-03
29	GO:0090351: seedling development	2.44E-03
30	GO:0006863: purine nucleobase transport	2.62E-03
31	GO:0051321: meiotic cell cycle	3.20E-03
32	GO:0006470: protein dephosphorylation	3.37E-03
33	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.41E-03
34	GO:0007005: mitochondrion organization	3.41E-03
35	GO:0009686: gibberellin biosynthetic process	3.61E-03
36	GO:0042127: regulation of cell proliferation	3.82E-03
37	GO:0000271: polysaccharide biosynthetic process	4.26E-03
38	GO:0045489: pectin biosynthetic process	4.48E-03
39	GO:0009658: chloroplast organization	4.55E-03
40	GO:0019760: glucosinolate metabolic process	5.91E-03
41	GO:0010027: thylakoid membrane organization	6.67E-03
42	GO:0048573: photoperiodism, flowering	7.48E-03
43	GO:0016311: dephosphorylation	7.75E-03
44	GO:0048481: plant ovule development	8.03E-03
45	GO:0048364: root development	8.67E-03
46	GO:0009867: jasmonic acid mediated signaling pathway	9.47E-03
47	GO:0016051: carbohydrate biosynthetic process	9.47E-03
48	GO:0005975: carbohydrate metabolic process	1.00E-02
49	GO:0048367: shoot system development	1.61E-02
50	GO:0009740: gibberellic acid mediated signaling pathway	1.72E-02
51	GO:0009553: embryo sac development	1.76E-02
52	GO:0016310: phosphorylation	1.84E-02
53	GO:0009790: embryo development	2.35E-02
54	GO:0007166: cell surface receptor signaling pathway	2.91E-02
55	GO:0008380: RNA splicing	3.00E-02
56	GO:0046777: protein autophosphorylation	4.41E-02
57	GO:0045892: negative regulation of transcription, DNA-templated	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
3	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
4	GO:0004818: glutamate-tRNA ligase activity	4.88E-05
5	GO:0004820: glycine-tRNA ligase activity	4.88E-05
6	GO:0042586: peptide deformylase activity	4.88E-05
7	GO:0004160: dihydroxy-acid dehydratase activity	4.88E-05
8	GO:0019156: isoamylase activity	1.20E-04
9	GO:0019200: carbohydrate kinase activity	1.20E-04
10	GO:0016836: hydro-lyase activity	4.04E-04
11	GO:0004556: alpha-amylase activity	6.29E-04
12	GO:2001070: starch binding	6.29E-04
13	GO:0004722: protein serine/threonine phosphatase activity	1.02E-03
14	GO:0000049: tRNA binding	1.91E-03
15	GO:0008061: chitin binding	2.44E-03
16	GO:0005345: purine nucleobase transmembrane transporter activity	3.01E-03
17	GO:0004176: ATP-dependent peptidase activity	3.20E-03
18	GO:0008408: 3'-5' exonuclease activity	3.20E-03
19	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.41E-03
20	GO:0003727: single-stranded RNA binding	3.82E-03
21	GO:0016791: phosphatase activity	5.91E-03
22	GO:0008237: metallopeptidase activity	6.16E-03
23	GO:0004222: metalloendopeptidase activity	8.60E-03
24	GO:0030145: manganese ion binding	8.88E-03
25	GO:0004519: endonuclease activity	9.04E-03
26	GO:0051539: 4 iron, 4 sulfur cluster binding	1.04E-02
27	GO:0043621: protein self-association	1.20E-02
28	GO:0016887: ATPase activity	1.29E-02
29	GO:0003690: double-stranded DNA binding	1.43E-02
30	GO:0016758: transferase activity, transferring hexosyl groups	2.06E-02
31	GO:0019843: rRNA binding	2.10E-02
32	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.52E-02
33	GO:0016301: kinase activity	2.67E-02
34	GO:0003824: catalytic activity	3.29E-02
35	GO:0008168: methyltransferase activity	3.52E-02
36	GO:0000287: magnesium ion binding	3.56E-02
37	GO:0046872: metal ion binding	3.92E-02
38	GO:0046983: protein dimerization activity	4.00E-02
39	GO:0042803: protein homodimerization activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0009570: chloroplast stroma	1.29E-06
3	GO:0000791: euchromatin	4.88E-05
4	GO:0030870: Mre11 complex	1.20E-04
5	GO:0009569: chloroplast starch grain	1.20E-04
6	GO:0008287: protein serine/threonine phosphatase complex	2.06E-04
7	GO:0009507: chloroplast	3.61E-04
8	GO:0000795: synaptonemal complex	5.13E-04
9	GO:0009536: plastid	1.49E-03
10	GO:0000785: chromatin	5.42E-03
11	GO:0015934: large ribosomal subunit	8.88E-03
12	GO:0005739: mitochondrion	3.79E-02