co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G17220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0010203: response to very low fluence red light stimulus	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0090042: tubulin deacetylation	0.00E+00
6	GO:0015882: L-ascorbic acid transport	0.00E+00
7	GO:0008298: intracellular mRNA localization	0.00E+00
8	GO:0071474: cellular hyperosmotic response	0.00E+00
9	GO:0006399: tRNA metabolic process	0.00E+00
10	GO:0043488: regulation of mRNA stability	0.00E+00
11	GO:0009658: chloroplast organization	2.32E-09
12	GO:0009904: chloroplast accumulation movement	3.73E-05
13	GO:0045038: protein import into chloroplast thylakoid membrane	3.73E-05
14	GO:0009903: chloroplast avoidance movement	7.74E-05
15	GO:0006400: tRNA modification	1.03E-04
16	GO:0010362: negative regulation of anion channel activity by blue light	1.73E-04
17	GO:0015969: guanosine tetraphosphate metabolic process	1.73E-04
18	GO:0031426: polycistronic mRNA processing	1.73E-04
19	GO:0051775: response to redox state	1.73E-04
20	GO:0000012: single strand break repair	1.73E-04
21	GO:0043266: regulation of potassium ion transport	1.73E-04
22	GO:0000481: maturation of 5S rRNA	1.73E-04
23	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.73E-04
24	GO:0043087: regulation of GTPase activity	1.73E-04
25	GO:2000021: regulation of ion homeostasis	1.73E-04
26	GO:0070574: cadmium ion transmembrane transport	1.73E-04
27	GO:1902458: positive regulation of stomatal opening	1.73E-04
28	GO:0010028: xanthophyll cycle	1.73E-04
29	GO:0034337: RNA folding	1.73E-04
30	GO:0006419: alanyl-tRNA aminoacylation	1.73E-04
31	GO:0009638: phototropism	2.41E-04
32	GO:0046741: transport of virus in host, tissue to tissue	3.92E-04
33	GO:0060359: response to ammonium ion	3.92E-04
34	GO:1900871: chloroplast mRNA modification	3.92E-04
35	GO:0000256: allantoin catabolic process	3.92E-04
36	GO:0010155: regulation of proton transport	3.92E-04
37	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.92E-04
38	GO:0051262: protein tetramerization	3.92E-04
39	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.92E-04
40	GO:0009767: photosynthetic electron transport chain	4.32E-04
41	GO:0031022: nuclear migration along microfilament	6.40E-04
42	GO:0010136: ureide catabolic process	6.40E-04
43	GO:0017006: protein-tetrapyrrole linkage	6.40E-04
44	GO:0043157: response to cation stress	6.40E-04
45	GO:0005977: glycogen metabolic process	6.40E-04
46	GO:0000913: preprophase band assembly	6.40E-04
47	GO:0006107: oxaloacetate metabolic process	9.13E-04
48	GO:0010239: chloroplast mRNA processing	9.13E-04
49	GO:0009584: detection of visible light	9.13E-04
50	GO:0033014: tetrapyrrole biosynthetic process	9.13E-04
51	GO:0006145: purine nucleobase catabolic process	9.13E-04
52	GO:0009226: nucleotide-sugar biosynthetic process	9.13E-04
53	GO:0051016: barbed-end actin filament capping	9.13E-04
54	GO:0043572: plastid fission	9.13E-04
55	GO:2001141: regulation of RNA biosynthetic process	9.13E-04
56	GO:0051322: anaphase	1.21E-03
57	GO:0006661: phosphatidylinositol biosynthetic process	1.21E-03
58	GO:0006021: inositol biosynthetic process	1.21E-03
59	GO:0006734: NADH metabolic process	1.21E-03
60	GO:0010021: amylopectin biosynthetic process	1.21E-03
61	GO:0048442: sepal development	1.21E-03
62	GO:0007018: microtubule-based movement	1.40E-03
63	GO:0080110: sporopollenin biosynthetic process	1.54E-03
64	GO:0019761: glucosinolate biosynthetic process	1.70E-03
65	GO:0032502: developmental process	1.70E-03
66	GO:0009630: gravitropism	1.70E-03
67	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.89E-03
68	GO:0010190: cytochrome b6f complex assembly	1.89E-03
69	GO:0046855: inositol phosphate dephosphorylation	1.89E-03
70	GO:0050665: hydrogen peroxide biosynthetic process	1.89E-03
71	GO:0009959: negative gravitropism	1.89E-03
72	GO:0000910: cytokinesis	2.17E-03
73	GO:0010076: maintenance of floral meristem identity	2.27E-03
74	GO:0017148: negative regulation of translation	2.27E-03
75	GO:0009854: oxidative photosynthetic carbon pathway	2.27E-03
76	GO:0010019: chloroplast-nucleus signaling pathway	2.27E-03
77	GO:0051693: actin filament capping	2.67E-03
78	GO:0010161: red light signaling pathway	2.67E-03
79	GO:0009395: phospholipid catabolic process	2.67E-03
80	GO:0018298: protein-chromophore linkage	2.99E-03
81	GO:0048564: photosystem I assembly	3.09E-03
82	GO:0042255: ribosome assembly	3.09E-03
83	GO:0006353: DNA-templated transcription, termination	3.09E-03
84	GO:0009690: cytokinin metabolic process	3.09E-03
85	GO:0006875: cellular metal ion homeostasis	3.09E-03
86	GO:0032508: DNA duplex unwinding	3.09E-03
87	GO:2000070: regulation of response to water deprivation	3.09E-03
88	GO:0071482: cellular response to light stimulus	3.54E-03
89	GO:0010204: defense response signaling pathway, resistance gene-independent	3.54E-03
90	GO:0017004: cytochrome complex assembly	3.54E-03
91	GO:0009637: response to blue light	3.78E-03
92	GO:0046685: response to arsenic-containing substance	4.00E-03
93	GO:0009821: alkaloid biosynthetic process	4.00E-03
94	GO:0048507: meristem development	4.00E-03
95	GO:0006783: heme biosynthetic process	4.00E-03
96	GO:0006754: ATP biosynthetic process	4.00E-03
97	GO:0000373: Group II intron splicing	4.00E-03
98	GO:0098656: anion transmembrane transport	4.00E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	4.49E-03
100	GO:0009098: leucine biosynthetic process	4.49E-03
101	GO:0048441: petal development	4.99E-03
102	GO:0043085: positive regulation of catalytic activity	5.52E-03
103	GO:0006415: translational termination	5.52E-03
104	GO:0006352: DNA-templated transcription, initiation	5.52E-03
105	GO:0009684: indoleacetic acid biosynthetic process	5.52E-03
106	GO:0006790: sulfur compound metabolic process	6.06E-03
107	GO:0045037: protein import into chloroplast stroma	6.06E-03
108	GO:0042538: hyperosmotic salinity response	6.10E-03
109	GO:0009585: red, far-red light phototransduction	6.55E-03
110	GO:0009785: blue light signaling pathway	6.61E-03
111	GO:0006108: malate metabolic process	6.61E-03
112	GO:0030036: actin cytoskeleton organization	6.61E-03
113	GO:0048440: carpel development	7.20E-03
114	GO:0010207: photosystem II assembly	7.20E-03
115	GO:0010020: chloroplast fission	7.20E-03
116	GO:0007015: actin filament organization	7.20E-03
117	GO:0006302: double-strand break repair	7.20E-03
118	GO:0019853: L-ascorbic acid biosynthetic process	7.79E-03
119	GO:0046854: phosphatidylinositol phosphorylation	7.79E-03
120	GO:0016575: histone deacetylation	9.69E-03
121	GO:0051302: regulation of cell division	9.69E-03
122	GO:0031348: negative regulation of defense response	1.10E-02
123	GO:0009411: response to UV	1.17E-02
124	GO:0009625: response to insect	1.17E-02
125	GO:0010584: pollen exine formation	1.24E-02
126	GO:0048443: stamen development	1.24E-02
127	GO:0009306: protein secretion	1.24E-02
128	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.32E-02
129	GO:0008033: tRNA processing	1.39E-02
130	GO:0045489: pectin biosynthetic process	1.47E-02
131	GO:0046323: glucose import	1.47E-02
132	GO:0010268: brassinosteroid homeostasis	1.47E-02
133	GO:0009791: post-embryonic development	1.62E-02
134	GO:0019252: starch biosynthetic process	1.62E-02
135	GO:0008654: phospholipid biosynthetic process	1.62E-02
136	GO:0055072: iron ion homeostasis	1.62E-02
137	GO:0000302: response to reactive oxygen species	1.70E-02
138	GO:0016132: brassinosteroid biosynthetic process	1.70E-02
139	GO:0010583: response to cyclopentenone	1.78E-02
140	GO:0016032: viral process	1.78E-02
141	GO:0016125: sterol metabolic process	1.95E-02
142	GO:0016126: sterol biosynthetic process	2.21E-02
143	GO:0010027: thylakoid membrane organization	2.21E-02
144	GO:0009409: response to cold	2.33E-02
145	GO:0015995: chlorophyll biosynthetic process	2.48E-02
146	GO:0005975: carbohydrate metabolic process	2.75E-02
147	GO:0000160: phosphorelay signal transduction system	2.77E-02
148	GO:0006508: proteolysis	2.81E-02
149	GO:0006811: ion transport	2.87E-02
150	GO:0010218: response to far red light	2.87E-02
151	GO:0010119: regulation of stomatal movement	2.96E-02
152	GO:0080167: response to karrikin	3.11E-02
153	GO:0045087: innate immune response	3.16E-02
154	GO:0006099: tricarboxylic acid cycle	3.27E-02
155	GO:0046777: protein autophosphorylation	3.32E-02
156	GO:0030001: metal ion transport	3.47E-02
157	GO:0009640: photomorphogenesis	3.79E-02
158	GO:0010114: response to red light	3.79E-02
159	GO:0042546: cell wall biogenesis	3.90E-02
160	GO:0009644: response to high light intensity	4.01E-02
161	GO:0000165: MAPK cascade	4.34E-02
162	GO:0006629: lipid metabolic process	4.57E-02
163	GO:0051603: proteolysis involved in cellular protein catabolic process	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
4	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
5	GO:0051721: protein phosphatase 2A binding	0.00E+00
6	GO:0042903: tubulin deacetylase activity	0.00E+00
7	GO:0050613: delta14-sterol reductase activity	0.00E+00
8	GO:0043014: alpha-tubulin binding	0.00E+00
9	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
10	GO:0004451: isocitrate lyase activity	1.73E-04
11	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.73E-04
12	GO:0004813: alanine-tRNA ligase activity	1.73E-04
13	GO:0004325: ferrochelatase activity	1.73E-04
14	GO:0008746: NAD(P)+ transhydrogenase activity	1.73E-04
15	GO:0004328: formamidase activity	1.73E-04
16	GO:0031516: far-red light photoreceptor activity	1.73E-04
17	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.73E-04
18	GO:0046906: tetrapyrrole binding	1.73E-04
19	GO:0005227: calcium activated cation channel activity	1.73E-04
20	GO:0004222: metalloendopeptidase activity	3.66E-04
21	GO:0008934: inositol monophosphate 1-phosphatase activity	3.92E-04
22	GO:0052833: inositol monophosphate 4-phosphatase activity	3.92E-04
23	GO:0019156: isoamylase activity	3.92E-04
24	GO:0048531: beta-1,3-galactosyltransferase activity	3.92E-04
25	GO:0008728: GTP diphosphokinase activity	3.92E-04
26	GO:0004103: choline kinase activity	3.92E-04
27	GO:0009883: red or far-red light photoreceptor activity	3.92E-04
28	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.92E-04
29	GO:0052832: inositol monophosphate 3-phosphatase activity	3.92E-04
30	GO:0000155: phosphorelay sensor kinase activity	4.32E-04
31	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.87E-04
32	GO:0042802: identical protein binding	6.36E-04
33	GO:0003861: 3-isopropylmalate dehydratase activity	6.40E-04
34	GO:0008020: G-protein coupled photoreceptor activity	6.40E-04
35	GO:0004180: carboxypeptidase activity	6.40E-04
36	GO:0005354: galactose transmembrane transporter activity	9.13E-04
37	GO:0048027: mRNA 5'-UTR binding	9.13E-04
38	GO:0015086: cadmium ion transmembrane transporter activity	9.13E-04
39	GO:0048487: beta-tubulin binding	9.13E-04
40	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	9.13E-04
41	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	9.13E-04
42	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	9.13E-04
43	GO:0009882: blue light photoreceptor activity	9.13E-04
44	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	9.13E-04
45	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	9.13E-04
46	GO:0080032: methyl jasmonate esterase activity	1.21E-03
47	GO:0016987: sigma factor activity	1.21E-03
48	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.21E-03
49	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.21E-03
50	GO:0008891: glycolate oxidase activity	1.21E-03
51	GO:0001053: plastid sigma factor activity	1.21E-03
52	GO:0016836: hydro-lyase activity	1.21E-03
53	GO:0010181: FMN binding	1.40E-03
54	GO:0008374: O-acyltransferase activity	1.54E-03
55	GO:0004040: amidase activity	1.54E-03
56	GO:0016491: oxidoreductase activity	1.85E-03
57	GO:0000293: ferric-chelate reductase activity	1.89E-03
58	GO:0004556: alpha-amylase activity	1.89E-03
59	GO:0016615: malate dehydrogenase activity	1.89E-03
60	GO:0080030: methyl indole-3-acetate esterase activity	1.89E-03
61	GO:0015144: carbohydrate transmembrane transporter activity	2.26E-03
62	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.27E-03
63	GO:0030060: L-malate dehydrogenase activity	2.27E-03
64	GO:0005261: cation channel activity	2.27E-03
65	GO:0003730: mRNA 3'-UTR binding	2.27E-03
66	GO:0004672: protein kinase activity	2.30E-03
67	GO:0005351: sugar:proton symporter activity	2.63E-03
68	GO:0015103: inorganic anion transmembrane transporter activity	2.67E-03
69	GO:0019899: enzyme binding	2.67E-03
70	GO:0008017: microtubule binding	2.87E-03
71	GO:0043022: ribosome binding	3.09E-03
72	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.54E-03
73	GO:0003993: acid phosphatase activity	3.95E-03
74	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.00E-03
75	GO:0003747: translation release factor activity	4.00E-03
76	GO:0016887: ATPase activity	4.15E-03
77	GO:0016844: strictosidine synthase activity	4.49E-03
78	GO:0003824: catalytic activity	4.78E-03
79	GO:0016788: hydrolase activity, acting on ester bonds	4.83E-03
80	GO:0004673: protein histidine kinase activity	4.99E-03
81	GO:0000049: tRNA binding	6.06E-03
82	GO:0008081: phosphoric diester hydrolase activity	6.61E-03
83	GO:0005315: inorganic phosphate transmembrane transporter activity	6.61E-03
84	GO:0031072: heat shock protein binding	6.61E-03
85	GO:0003690: double-stranded DNA binding	6.78E-03
86	GO:0003777: microtubule motor activity	7.25E-03
87	GO:0004871: signal transducer activity	8.28E-03
88	GO:0004407: histone deacetylase activity	9.03E-03
89	GO:0004176: ATP-dependent peptidase activity	1.03E-02
90	GO:0003727: single-stranded RNA binding	1.24E-02
91	GO:0008514: organic anion transmembrane transporter activity	1.24E-02
92	GO:0008080: N-acetyltransferase activity	1.47E-02
93	GO:0004527: exonuclease activity	1.47E-02
94	GO:0046873: metal ion transmembrane transporter activity	1.47E-02
95	GO:0005355: glucose transmembrane transporter activity	1.54E-02
96	GO:0050662: coenzyme binding	1.54E-02
97	GO:0048038: quinone binding	1.70E-02
98	GO:0008237: metallopeptidase activity	2.04E-02
99	GO:0016597: amino acid binding	2.12E-02
100	GO:0008236: serine-type peptidase activity	2.58E-02
101	GO:0005096: GTPase activator activity	2.77E-02
102	GO:0003697: single-stranded DNA binding	3.16E-02
103	GO:0004185: serine-type carboxypeptidase activity	3.79E-02
104	GO:0043621: protein self-association	4.01E-02
105	GO:0035091: phosphatidylinositol binding	4.01E-02
106	GO:0005509: calcium ion binding	4.57E-02
107	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.90E-16
3	GO:0009535: chloroplast thylakoid membrane	2.47E-05
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.02E-04
5	GO:0009570: chloroplast stroma	2.81E-04
6	GO:0080085: signal recognition particle, chloroplast targeting	3.92E-04
7	GO:0008290: F-actin capping protein complex	3.92E-04
8	GO:0009574: preprophase band	4.32E-04
9	GO:0033281: TAT protein transport complex	6.40E-04
10	GO:0009941: chloroplast envelope	9.80E-04
11	GO:0005871: kinesin complex	1.12E-03
12	GO:0031969: chloroplast membrane	1.18E-03
13	GO:0009898: cytoplasmic side of plasma membrane	1.21E-03
14	GO:0005773: vacuole	1.34E-03
15	GO:0009706: chloroplast inner membrane	1.36E-03
16	GO:0055035: plastid thylakoid membrane	1.54E-03
17	GO:0005623: cell	1.87E-03
18	GO:0009986: cell surface	2.67E-03
19	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.54E-03
20	GO:0046658: anchored component of plasma membrane	3.87E-03
21	GO:0042644: chloroplast nucleoid	4.00E-03
22	GO:0016604: nuclear body	4.49E-03
23	GO:0009536: plastid	5.81E-03
24	GO:0005874: microtubule	5.94E-03
25	GO:0032040: small-subunit processome	6.06E-03
26	GO:0030176: integral component of endoplasmic reticulum membrane	7.79E-03
27	GO:0009654: photosystem II oxygen evolving complex	9.69E-03
28	GO:0042651: thylakoid membrane	9.69E-03
29	GO:0016021: integral component of membrane	9.89E-03
30	GO:0009524: phragmoplast	1.23E-02
31	GO:0005886: plasma membrane	1.39E-02
32	GO:0009504: cell plate	1.62E-02
33	GO:0019898: extrinsic component of membrane	1.62E-02
34	GO:0005694: chromosome	1.78E-02
35	GO:0030529: intracellular ribonucleoprotein complex	2.21E-02
36	GO:0009579: thylakoid	2.64E-02
37	GO:0009707: chloroplast outer membrane	2.67E-02
38	GO:0016020: membrane	3.01E-02
39	GO:0005819: spindle	3.37E-02
40	GO:0031225: anchored component of membrane	3.67E-02
41	GO:0005622: intracellular	4.30E-02