co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G17140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0007638: mechanosensory behavior	0.00E+00
9	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
10	GO:0009734: auxin-activated signaling pathway	1.14E-06
11	GO:0040008: regulation of growth	2.20E-06
12	GO:0005983: starch catabolic process	4.42E-06
13	GO:0009733: response to auxin	5.03E-06
14	GO:0015995: chlorophyll biosynthetic process	2.30E-05
15	GO:0046620: regulation of organ growth	2.40E-05
16	GO:0009658: chloroplast organization	9.14E-05
17	GO:0010020: chloroplast fission	1.76E-04
18	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.77E-04
19	GO:0010027: thylakoid membrane organization	1.91E-04
20	GO:0048497: maintenance of floral organ identity	1.92E-04
21	GO:0042793: transcription from plastid promoter	2.73E-04
22	GO:0042372: phylloquinone biosynthetic process	3.65E-04
23	GO:0016042: lipid catabolic process	3.92E-04
24	GO:0015904: tetracycline transport	4.70E-04
25	GO:0000023: maltose metabolic process	4.70E-04
26	GO:0000025: maltose catabolic process	4.70E-04
27	GO:0070509: calcium ion import	4.70E-04
28	GO:0005980: glycogen catabolic process	4.70E-04
29	GO:0030198: extracellular matrix organization	4.70E-04
30	GO:0006438: valyl-tRNA aminoacylation	4.70E-04
31	GO:0046520: sphingoid biosynthetic process	4.70E-04
32	GO:0010442: guard cell morphogenesis	4.70E-04
33	GO:0010480: microsporocyte differentiation	4.70E-04
34	GO:0042759: long-chain fatty acid biosynthetic process	4.70E-04
35	GO:0042371: vitamin K biosynthetic process	4.70E-04
36	GO:0043007: maintenance of rDNA	4.70E-04
37	GO:1902458: positive regulation of stomatal opening	4.70E-04
38	GO:0006631: fatty acid metabolic process	5.75E-04
39	GO:0009640: photomorphogenesis	6.53E-04
40	GO:0010583: response to cyclopentenone	9.82E-04
41	GO:0006568: tryptophan metabolic process	1.01E-03
42	GO:2000123: positive regulation of stomatal complex development	1.01E-03
43	GO:0009638: phototropism	1.01E-03
44	GO:0052541: plant-type cell wall cellulose metabolic process	1.01E-03
45	GO:0006779: porphyrin-containing compound biosynthetic process	1.01E-03
46	GO:1901529: positive regulation of anion channel activity	1.01E-03
47	GO:0009629: response to gravity	1.01E-03
48	GO:0019388: galactose catabolic process	1.01E-03
49	GO:0007154: cell communication	1.01E-03
50	GO:0018026: peptidyl-lysine monomethylation	1.01E-03
51	GO:0071497: cellular response to freezing	1.01E-03
52	GO:0009786: regulation of asymmetric cell division	1.01E-03
53	GO:0031648: protein destabilization	1.01E-03
54	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.01E-03
55	GO:0009828: plant-type cell wall loosening	1.15E-03
56	GO:0006949: syncytium formation	1.17E-03
57	GO:0006782: protoporphyrinogen IX biosynthetic process	1.17E-03
58	GO:0048829: root cap development	1.17E-03
59	GO:0009641: shade avoidance	1.17E-03
60	GO:0009416: response to light stimulus	1.50E-03
61	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.65E-03
62	GO:0033591: response to L-ascorbic acid	1.65E-03
63	GO:1902448: positive regulation of shade avoidance	1.65E-03
64	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.65E-03
65	GO:0030261: chromosome condensation	1.65E-03
66	GO:0010588: cotyledon vascular tissue pattern formation	1.76E-03
67	GO:2000012: regulation of auxin polar transport	1.76E-03
68	GO:0010102: lateral root morphogenesis	1.76E-03
69	GO:0006006: glucose metabolic process	1.76E-03
70	GO:0070588: calcium ion transmembrane transport	2.22E-03
71	GO:0007231: osmosensory signaling pathway	2.39E-03
72	GO:0009102: biotin biosynthetic process	2.39E-03
73	GO:0009647: skotomorphogenesis	2.39E-03
74	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.39E-03
75	GO:0010731: protein glutathionylation	2.39E-03
76	GO:0046739: transport of virus in multicellular host	2.39E-03
77	GO:0009590: detection of gravity	2.39E-03
78	GO:0043572: plastid fission	2.39E-03
79	GO:0005975: carbohydrate metabolic process	2.45E-03
80	GO:0006071: glycerol metabolic process	2.48E-03
81	GO:0019953: sexual reproduction	3.04E-03
82	GO:0009765: photosynthesis, light harvesting	3.22E-03
83	GO:0022622: root system development	3.22E-03
84	GO:0033500: carbohydrate homeostasis	3.22E-03
85	GO:2000038: regulation of stomatal complex development	3.22E-03
86	GO:0006808: regulation of nitrogen utilization	3.22E-03
87	GO:1901141: regulation of lignin biosynthetic process	3.22E-03
88	GO:0010109: regulation of photosynthesis	3.22E-03
89	GO:0009926: auxin polar transport	3.78E-03
90	GO:0016123: xanthophyll biosynthetic process	4.13E-03
91	GO:0010375: stomatal complex patterning	4.13E-03
92	GO:0016120: carotene biosynthetic process	4.13E-03
93	GO:0010236: plastoquinone biosynthetic process	4.13E-03
94	GO:0045038: protein import into chloroplast thylakoid membrane	4.13E-03
95	GO:0007094: mitotic spindle assembly checkpoint	4.13E-03
96	GO:0009664: plant-type cell wall organization	5.06E-03
97	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.11E-03
98	GO:0009959: negative gravitropism	5.11E-03
99	GO:0009913: epidermal cell differentiation	5.11E-03
100	GO:0016554: cytidine to uridine editing	5.11E-03
101	GO:1902456: regulation of stomatal opening	5.11E-03
102	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.11E-03
103	GO:0010405: arabinogalactan protein metabolic process	5.11E-03
104	GO:0010182: sugar mediated signaling pathway	5.49E-03
105	GO:0042026: protein refolding	6.17E-03
106	GO:0006458: 'de novo' protein folding	6.17E-03
107	GO:2000033: regulation of seed dormancy process	6.17E-03
108	GO:0030488: tRNA methylation	6.17E-03
109	GO:0080086: stamen filament development	6.17E-03
110	GO:0019252: starch biosynthetic process	6.34E-03
111	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	6.79E-03
112	GO:0071554: cell wall organization or biogenesis	6.79E-03
113	GO:0009793: embryo development ending in seed dormancy	7.16E-03
114	GO:0032502: developmental process	7.26E-03
115	GO:0048528: post-embryonic root development	7.30E-03
116	GO:0009772: photosynthetic electron transport in photosystem II	7.30E-03
117	GO:0048437: floral organ development	7.30E-03
118	GO:0010444: guard mother cell differentiation	7.30E-03
119	GO:0030307: positive regulation of cell growth	7.30E-03
120	GO:0032880: regulation of protein localization	7.30E-03
121	GO:0010161: red light signaling pathway	7.30E-03
122	GO:0009826: unidimensional cell growth	7.45E-03
123	GO:1901657: glycosyl compound metabolic process	7.74E-03
124	GO:0009740: gibberellic acid mediated signaling pathway	8.05E-03
125	GO:0005978: glycogen biosynthetic process	8.49E-03
126	GO:0006605: protein targeting	8.49E-03
127	GO:2000070: regulation of response to water deprivation	8.49E-03
128	GO:0000105: histidine biosynthetic process	8.49E-03
129	GO:0009742: brassinosteroid mediated signaling pathway	9.37E-03
130	GO:0010099: regulation of photomorphogenesis	9.75E-03
131	GO:0015996: chlorophyll catabolic process	9.75E-03
132	GO:0007186: G-protein coupled receptor signaling pathway	9.75E-03
133	GO:0010497: plasmodesmata-mediated intercellular transport	9.75E-03
134	GO:0010100: negative regulation of photomorphogenesis	9.75E-03
135	GO:0006526: arginine biosynthetic process	9.75E-03
136	GO:0032544: plastid translation	9.75E-03
137	GO:0051865: protein autoubiquitination	1.11E-02
138	GO:0010206: photosystem II repair	1.11E-02
139	GO:0006783: heme biosynthetic process	1.11E-02
140	GO:0009835: fruit ripening	1.11E-02
141	GO:1900865: chloroplast RNA modification	1.25E-02
142	GO:0007346: regulation of mitotic cell cycle	1.25E-02
143	GO:0000160: phosphorelay signal transduction system	1.36E-02
144	GO:0009813: flavonoid biosynthetic process	1.36E-02
145	GO:0010162: seed dormancy process	1.39E-02
146	GO:0006508: proteolysis	1.45E-02
147	GO:0006816: calcium ion transport	1.54E-02
148	GO:0009773: photosynthetic electron transport in photosystem I	1.54E-02
149	GO:0009073: aromatic amino acid family biosynthetic process	1.54E-02
150	GO:0048229: gametophyte development	1.54E-02
151	GO:0012501: programmed cell death	1.70E-02
152	GO:0045037: protein import into chloroplast stroma	1.70E-02
153	GO:0030048: actin filament-based movement	1.86E-02
154	GO:0009785: blue light signaling pathway	1.86E-02
155	GO:0010628: positive regulation of gene expression	1.86E-02
156	GO:0050826: response to freezing	1.86E-02
157	GO:0010075: regulation of meristem growth	1.86E-02
158	GO:0006629: lipid metabolic process	1.97E-02
159	GO:0009934: regulation of meristem structural organization	2.03E-02
160	GO:0010207: photosystem II assembly	2.03E-02
161	GO:0009266: response to temperature stimulus	2.03E-02
162	GO:0080188: RNA-directed DNA methylation	2.20E-02
163	GO:0090351: seedling development	2.20E-02
164	GO:0010030: positive regulation of seed germination	2.20E-02
165	GO:0000162: tryptophan biosynthetic process	2.38E-02
166	GO:0010025: wax biosynthetic process	2.38E-02
167	GO:0006833: water transport	2.38E-02
168	GO:0080147: root hair cell development	2.56E-02
169	GO:0010187: negative regulation of seed germination	2.56E-02
170	GO:0006418: tRNA aminoacylation for protein translation	2.74E-02
171	GO:0010026: trichome differentiation	2.74E-02
172	GO:0007017: microtubule-based process	2.74E-02
173	GO:0009736: cytokinin-activated signaling pathway	2.86E-02
174	GO:0007275: multicellular organism development	2.89E-02
175	GO:0061077: chaperone-mediated protein folding	2.94E-02
176	GO:0003333: amino acid transmembrane transport	2.94E-02
177	GO:0048511: rhythmic process	2.94E-02
178	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.13E-02
179	GO:0007165: signal transduction	3.25E-02
180	GO:0009693: ethylene biosynthetic process	3.33E-02
181	GO:0009686: gibberellin biosynthetic process	3.33E-02
182	GO:0010091: trichome branching	3.54E-02
183	GO:0016117: carotenoid biosynthetic process	3.74E-02
184	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.74E-02
185	GO:0008284: positive regulation of cell proliferation	3.74E-02
186	GO:0010118: stomatal movement	3.96E-02
187	GO:0048653: anther development	3.96E-02
188	GO:0042631: cellular response to water deprivation	3.96E-02
189	GO:0080022: primary root development	3.96E-02
190	GO:0034220: ion transmembrane transport	3.96E-02
191	GO:0010087: phloem or xylem histogenesis	3.96E-02
192	GO:0009624: response to nematode	4.06E-02
193	GO:0009741: response to brassinosteroid	4.17E-02
194	GO:0009958: positive gravitropism	4.17E-02
195	GO:0006520: cellular amino acid metabolic process	4.17E-02
196	GO:0010305: leaf vascular tissue pattern formation	4.17E-02
197	GO:0009646: response to absence of light	4.39E-02
198	GO:0048544: recognition of pollen	4.39E-02
199	GO:0042752: regulation of circadian rhythm	4.39E-02
200	GO:0048825: cotyledon development	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0005363: maltose transmembrane transporter activity	0.00E+00
4	GO:0071633: dihydroceramidase activity	0.00E+00
5	GO:0010303: limit dextrinase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
9	GO:0051060: pullulanase activity	0.00E+00
10	GO:0047661: amino-acid racemase activity	0.00E+00
11	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
12	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
13	GO:0005504: fatty acid binding	3.33E-05
14	GO:0045430: chalcone isomerase activity	1.25E-04
15	GO:0004176: ATP-dependent peptidase activity	3.64E-04
16	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.70E-04
17	GO:0000170: sphingosine hydroxylase activity	4.70E-04
18	GO:0050139: nicotinate-N-glucosyltransferase activity	4.70E-04
19	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.70E-04
20	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	4.70E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.70E-04
22	GO:0008184: glycogen phosphorylase activity	4.70E-04
23	GO:0004134: 4-alpha-glucanotransferase activity	4.70E-04
24	GO:0050308: sugar-phosphatase activity	4.70E-04
25	GO:0004645: phosphorylase activity	4.70E-04
26	GO:0009374: biotin binding	4.70E-04
27	GO:0019203: carbohydrate phosphatase activity	4.70E-04
28	GO:0010313: phytochrome binding	4.70E-04
29	GO:0004832: valine-tRNA ligase activity	4.70E-04
30	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.70E-04
31	GO:0008889: glycerophosphodiester phosphodiesterase activity	8.55E-04
32	GO:0052689: carboxylic ester hydrolase activity	8.86E-04
33	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.01E-03
34	GO:0016630: protochlorophyllide reductase activity	1.01E-03
35	GO:0042284: sphingolipid delta-4 desaturase activity	1.01E-03
36	GO:0008493: tetracycline transporter activity	1.01E-03
37	GO:0004614: phosphoglucomutase activity	1.01E-03
38	GO:0008237: metallopeptidase activity	1.24E-03
39	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.65E-03
40	GO:0070330: aromatase activity	1.65E-03
41	GO:0017150: tRNA dihydrouridine synthase activity	1.65E-03
42	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.65E-03
43	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.65E-03
44	GO:0005262: calcium channel activity	1.76E-03
45	GO:0016788: hydrolase activity, acting on ester bonds	2.02E-03
46	GO:0001872: (1->3)-beta-D-glucan binding	2.39E-03
47	GO:0016851: magnesium chelatase activity	2.39E-03
48	GO:0043023: ribosomal large subunit binding	2.39E-03
49	GO:0005528: FK506 binding	2.75E-03
50	GO:0019199: transmembrane receptor protein kinase activity	3.22E-03
51	GO:0004659: prenyltransferase activity	3.22E-03
52	GO:0016279: protein-lysine N-methyltransferase activity	3.22E-03
53	GO:0018685: alkane 1-monooxygenase activity	4.13E-03
54	GO:0003989: acetyl-CoA carboxylase activity	4.13E-03
55	GO:0043621: protein self-association	4.18E-03
56	GO:0003727: single-stranded RNA binding	4.34E-03
57	GO:0046983: protein dimerization activity	4.85E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.11E-03
59	GO:0004556: alpha-amylase activity	5.11E-03
60	GO:0016208: AMP binding	5.11E-03
61	GO:2001070: starch binding	5.11E-03
62	GO:0001085: RNA polymerase II transcription factor binding	5.49E-03
63	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	6.17E-03
64	GO:0000156: phosphorelay response regulator activity	7.74E-03
65	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	8.49E-03
66	GO:0016413: O-acetyltransferase activity	9.30E-03
67	GO:0008173: RNA methyltransferase activity	9.75E-03
68	GO:0004674: protein serine/threonine kinase activity	9.91E-03
69	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.11E-02
70	GO:0102483: scopolin beta-glucosidase activity	1.16E-02
71	GO:0030170: pyridoxal phosphate binding	1.32E-02
72	GO:0004222: metalloendopeptidase activity	1.42E-02
73	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.49E-02
74	GO:0044183: protein binding involved in protein folding	1.54E-02
75	GO:0047372: acylglycerol lipase activity	1.54E-02
76	GO:0004871: signal transducer activity	1.54E-02
77	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.54E-02
78	GO:0008422: beta-glucosidase activity	1.79E-02
79	GO:0003725: double-stranded RNA binding	1.86E-02
80	GO:0031072: heat shock protein binding	1.86E-02
81	GO:0003774: motor activity	2.03E-02
82	GO:0008083: growth factor activity	2.03E-02
83	GO:0008266: poly(U) RNA binding	2.03E-02
84	GO:0003712: transcription cofactor activity	2.20E-02
85	GO:0008146: sulfotransferase activity	2.20E-02
86	GO:0004190: aspartic-type endopeptidase activity	2.20E-02
87	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.47E-02
88	GO:0033612: receptor serine/threonine kinase binding	2.94E-02
89	GO:0008408: 3'-5' exonuclease activity	2.94E-02
90	GO:0000287: magnesium ion binding	2.96E-02
91	GO:0016298: lipase activity	2.96E-02
92	GO:0008289: lipid binding	3.21E-02
93	GO:0004650: polygalacturonase activity	3.71E-02
94	GO:0004812: aminoacyl-tRNA ligase activity	3.74E-02
95	GO:0005515: protein binding	3.80E-02
96	GO:0051082: unfolded protein binding	4.06E-02
97	GO:0004527: exonuclease activity	4.17E-02
98	GO:0016853: isomerase activity	4.39E-02
99	GO:0019901: protein kinase binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	5.51E-10
2	GO:0009941: chloroplast envelope	6.36E-10
3	GO:0009507: chloroplast	1.07E-08
4	GO:0009534: chloroplast thylakoid	1.56E-07
5	GO:0009706: chloroplast inner membrane	3.38E-04
6	GO:0000796: condensin complex	4.70E-04
7	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.01E-03
8	GO:0031357: integral component of chloroplast inner membrane	1.01E-03
9	GO:0010319: stromule	1.24E-03
10	GO:0009536: plastid	1.41E-03
11	GO:0009528: plastid inner membrane	1.65E-03
12	GO:0019897: extrinsic component of plasma membrane	1.65E-03
13	GO:0010007: magnesium chelatase complex	1.65E-03
14	GO:0030139: endocytic vesicle	1.65E-03
15	GO:0009317: acetyl-CoA carboxylase complex	1.65E-03
16	GO:0009508: plastid chromosome	1.76E-03
17	GO:0032585: multivesicular body membrane	2.39E-03
18	GO:0005886: plasma membrane	2.58E-03
19	GO:0009535: chloroplast thylakoid membrane	2.61E-03
20	GO:0009527: plastid outer membrane	3.22E-03
21	GO:0030286: dynein complex	3.22E-03
22	GO:0005828: kinetochore microtubule	3.22E-03
23	GO:0000776: kinetochore	4.13E-03
24	GO:0010369: chromocenter	6.17E-03
25	GO:0005655: nucleolar ribonuclease P complex	6.17E-03
26	GO:0000777: condensed chromosome kinetochore	6.17E-03
27	GO:0046658: anchored component of plasma membrane	6.22E-03
28	GO:0009986: cell surface	7.30E-03
29	GO:0009501: amyloplast	8.49E-03
30	GO:0009295: nucleoid	8.76E-03
31	GO:0031969: chloroplast membrane	1.10E-02
32	GO:0005667: transcription factor complex	1.10E-02
33	GO:0009543: chloroplast thylakoid lumen	1.16E-02
34	GO:0005876: spindle microtubule	1.25E-02
35	GO:0000418: DNA-directed RNA polymerase IV complex	1.39E-02
36	GO:0016459: myosin complex	1.39E-02
37	GO:0005884: actin filament	1.54E-02
38	GO:0009532: plastid stroma	2.94E-02
39	GO:0031225: anchored component of membrane	3.27E-02
40	GO:0015629: actin cytoskeleton	3.33E-02