Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G16080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
5GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0005996: monosaccharide metabolic process0.00E+00
8GO:0046471: phosphatidylglycerol metabolic process0.00E+00
9GO:1905157: positive regulation of photosynthesis0.00E+00
10GO:0015995: chlorophyll biosynthetic process9.21E-10
11GO:0010207: photosystem II assembly1.92E-09
12GO:0015979: photosynthesis2.50E-08
13GO:0009773: photosynthetic electron transport in photosystem I3.76E-08
14GO:0032544: plastid translation2.64E-05
15GO:0090391: granum assembly2.76E-05
16GO:0071484: cellular response to light intensity5.99E-05
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.99E-05
18GO:0010114: response to red light6.42E-05
19GO:0015994: chlorophyll metabolic process1.05E-04
20GO:0006094: gluconeogenesis1.17E-04
21GO:0006636: unsaturated fatty acid biosynthetic process1.95E-04
22GO:0010190: cytochrome b6f complex assembly2.32E-04
23GO:0042549: photosystem II stabilization2.32E-04
24GO:0055114: oxidation-reduction process2.36E-04
25GO:0009768: photosynthesis, light harvesting in photosystem I2.60E-04
26GO:1901259: chloroplast rRNA processing3.12E-04
27GO:0009853: photorespiration3.43E-04
28GO:0010196: nonphotochemical quenching4.03E-04
29GO:0006835: dicarboxylic acid transport4.23E-04
30GO:0000476: maturation of 4.5S rRNA4.23E-04
31GO:0000967: rRNA 5'-end processing4.23E-04
32GO:0009090: homoserine biosynthetic process4.23E-04
33GO:0005980: glycogen catabolic process4.23E-04
34GO:0046467: membrane lipid biosynthetic process4.23E-04
35GO:0015671: oxygen transport4.23E-04
36GO:0019544: arginine catabolic process to glutamate4.23E-04
37GO:0071277: cellular response to calcium ion4.23E-04
38GO:0080093: regulation of photorespiration4.23E-04
39GO:0031998: regulation of fatty acid beta-oxidation4.23E-04
40GO:0010028: xanthophyll cycle4.23E-04
41GO:0034337: RNA folding4.23E-04
42GO:0006810: transport5.20E-04
43GO:0009657: plastid organization6.14E-04
44GO:0006098: pentose-phosphate shunt7.36E-04
45GO:0010206: photosystem II repair7.36E-04
46GO:0030388: fructose 1,6-bisphosphate metabolic process9.16E-04
47GO:0010270: photosystem II oxygen evolving complex assembly9.16E-04
48GO:0034470: ncRNA processing9.16E-04
49GO:0006898: receptor-mediated endocytosis9.16E-04
50GO:0071457: cellular response to ozone9.16E-04
51GO:0010353: response to trehalose9.16E-04
52GO:0016122: xanthophyll metabolic process9.16E-04
53GO:0006729: tetrahydrobiopterin biosynthetic process9.16E-04
54GO:0006782: protoporphyrinogen IX biosynthetic process1.01E-03
55GO:0032259: methylation1.05E-03
56GO:0006000: fructose metabolic process1.49E-03
57GO:0006518: peptide metabolic process1.49E-03
58GO:0009405: pathogenesis1.49E-03
59GO:0006696: ergosterol biosynthetic process1.49E-03
60GO:0010143: cutin biosynthetic process1.70E-03
61GO:0009152: purine ribonucleotide biosynthetic process2.15E-03
62GO:0046653: tetrahydrofolate metabolic process2.15E-03
63GO:0009052: pentose-phosphate shunt, non-oxidative branch2.15E-03
64GO:0009067: aspartate family amino acid biosynthetic process2.15E-03
65GO:1902358: sulfate transmembrane transport2.15E-03
66GO:0045338: farnesyl diphosphate metabolic process2.15E-03
67GO:0006020: inositol metabolic process2.15E-03
68GO:0006633: fatty acid biosynthetic process2.76E-03
69GO:0061077: chaperone-mediated protein folding2.86E-03
70GO:0071486: cellular response to high light intensity2.89E-03
71GO:0019464: glycine decarboxylation via glycine cleavage system2.89E-03
72GO:0009765: photosynthesis, light harvesting2.89E-03
73GO:0045727: positive regulation of translation2.89E-03
74GO:0006021: inositol biosynthetic process2.89E-03
75GO:0071483: cellular response to blue light2.89E-03
76GO:0009735: response to cytokinin3.00E-03
77GO:0006465: signal peptide processing3.71E-03
78GO:0071493: cellular response to UV-B3.71E-03
79GO:0006656: phosphatidylcholine biosynthetic process3.71E-03
80GO:0006564: L-serine biosynthetic process3.71E-03
81GO:0009904: chloroplast accumulation movement3.71E-03
82GO:0006097: glyoxylate cycle3.71E-03
83GO:0006364: rRNA processing4.53E-03
84GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.59E-03
85GO:1902456: regulation of stomatal opening4.59E-03
86GO:0006828: manganese ion transport4.59E-03
87GO:0046855: inositol phosphate dephosphorylation4.59E-03
88GO:0009643: photosynthetic acclimation4.59E-03
89GO:0010304: PSII associated light-harvesting complex II catabolic process4.59E-03
90GO:0006751: glutathione catabolic process4.59E-03
91GO:0009955: adaxial/abaxial pattern specification5.53E-03
92GO:0071333: cellular response to glucose stimulus5.53E-03
93GO:0009903: chloroplast avoidance movement5.53E-03
94GO:0009854: oxidative photosynthetic carbon pathway5.53E-03
95GO:0009088: threonine biosynthetic process5.53E-03
96GO:0042254: ribosome biogenesis6.39E-03
97GO:0009772: photosynthetic electron transport in photosystem II6.54E-03
98GO:0009645: response to low light intensity stimulus6.54E-03
99GO:0008272: sulfate transport6.54E-03
100GO:0009769: photosynthesis, light harvesting in photosystem II6.54E-03
101GO:0009610: response to symbiotic fungus6.54E-03
102GO:1901657: glycosyl compound metabolic process6.61E-03
103GO:0030091: protein repair7.60E-03
104GO:0009642: response to light intensity7.60E-03
105GO:0006353: DNA-templated transcription, termination7.60E-03
106GO:0009704: de-etiolation7.60E-03
107GO:0010027: thylakoid membrane organization8.41E-03
108GO:0006002: fructose 6-phosphate metabolic process8.73E-03
109GO:0015996: chlorophyll catabolic process8.73E-03
110GO:0019430: removal of superoxide radicals8.73E-03
111GO:0009821: alkaloid biosynthetic process9.92E-03
112GO:0090333: regulation of stomatal closure9.92E-03
113GO:0019432: triglyceride biosynthetic process9.92E-03
114GO:0006783: heme biosynthetic process9.92E-03
115GO:0006754: ATP biosynthetic process9.92E-03
116GO:0018298: protein-chromophore linkage1.10E-02
117GO:0010205: photoinhibition1.12E-02
118GO:0006779: porphyrin-containing compound biosynthetic process1.12E-02
119GO:0009086: methionine biosynthetic process1.12E-02
120GO:0005982: starch metabolic process1.12E-02
121GO:0009813: flavonoid biosynthetic process1.16E-02
122GO:0010218: response to far red light1.21E-02
123GO:0009641: shade avoidance1.24E-02
124GO:0006949: syncytium formation1.24E-02
125GO:0046686: response to cadmium ion1.28E-02
126GO:0006816: calcium ion transport1.38E-02
127GO:0009089: lysine biosynthetic process via diaminopimelate1.38E-02
128GO:0043085: positive regulation of catalytic activity1.38E-02
129GO:0006415: translational termination1.38E-02
130GO:0000272: polysaccharide catabolic process1.38E-02
131GO:0018119: peptidyl-cysteine S-nitrosylation1.38E-02
132GO:0009637: response to blue light1.40E-02
133GO:0034599: cellular response to oxidative stress1.46E-02
134GO:0006790: sulfur compound metabolic process1.52E-02
135GO:0005983: starch catabolic process1.52E-02
136GO:0016024: CDP-diacylglycerol biosynthetic process1.52E-02
137GO:0009767: photosynthetic electron transport chain1.66E-02
138GO:0005986: sucrose biosynthetic process1.66E-02
139GO:0006631: fatty acid metabolic process1.66E-02
140GO:0030048: actin filament-based movement1.66E-02
141GO:0006108: malate metabolic process1.66E-02
142GO:0018107: peptidyl-threonine phosphorylation1.66E-02
143GO:0007015: actin filament organization1.81E-02
144GO:0019253: reductive pentose-phosphate cycle1.81E-02
145GO:0010223: secondary shoot formation1.81E-02
146GO:0009266: response to temperature stimulus1.81E-02
147GO:0005985: sucrose metabolic process1.96E-02
148GO:0046854: phosphatidylinositol phosphorylation1.96E-02
149GO:0006418: tRNA aminoacylation for protein translation2.45E-02
150GO:0009409: response to cold2.53E-02
151GO:0019915: lipid storage2.62E-02
152GO:0009269: response to desiccation2.62E-02
153GO:0016114: terpenoid biosynthetic process2.62E-02
154GO:0016226: iron-sulfur cluster assembly2.80E-02
155GO:0030433: ubiquitin-dependent ERAD pathway2.80E-02
156GO:0006096: glycolytic process2.88E-02
157GO:0071215: cellular response to abscisic acid stimulus2.98E-02
158GO:0005975: carbohydrate metabolic process3.12E-02
159GO:0009306: protein secretion3.16E-02
160GO:0080167: response to karrikin3.25E-02
161GO:0016117: carotenoid biosynthetic process3.34E-02
162GO:0042631: cellular response to water deprivation3.54E-02
163GO:0000413: protein peptidyl-prolyl isomerization3.54E-02
164GO:0071472: cellular response to salt stress3.73E-02
165GO:0006662: glycerol ether metabolic process3.73E-02
166GO:0009741: response to brassinosteroid3.73E-02
167GO:0015986: ATP synthesis coupled proton transport3.93E-02
168GO:0019252: starch biosynthetic process4.13E-02
169GO:0032502: developmental process4.54E-02
170GO:0009630: gravitropism4.54E-02
171GO:0009058: biosynthetic process4.56E-02
172GO:0009828: plant-type cell wall loosening4.96E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
3GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
4GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
5GO:0046422: violaxanthin de-epoxidase activity0.00E+00
6GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0046408: chlorophyll synthetase activity0.00E+00
10GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
13GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
14GO:0019843: rRNA binding4.16E-07
15GO:0016851: magnesium chelatase activity5.99E-05
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.03E-05
17GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.05E-04
18GO:0031409: pigment binding1.95E-04
19GO:0005528: FK506 binding2.26E-04
20GO:0004332: fructose-bisphosphate aldolase activity2.32E-04
21GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.23E-04
22GO:0050521: alpha-glucan, water dikinase activity4.23E-04
23GO:0008184: glycogen phosphorylase activity4.23E-04
24GO:0004645: phosphorylase activity4.23E-04
25GO:0009374: biotin binding4.23E-04
26GO:0034256: chlorophyll(ide) b reductase activity4.23E-04
27GO:0004853: uroporphyrinogen decarboxylase activity4.23E-04
28GO:0045485: omega-6 fatty acid desaturase activity4.23E-04
29GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.23E-04
30GO:0045486: naringenin 3-dioxygenase activity4.23E-04
31GO:0005344: oxygen transporter activity4.23E-04
32GO:0035671: enone reductase activity4.23E-04
33GO:0004617: phosphoglycerate dehydrogenase activity9.16E-04
34GO:0052832: inositol monophosphate 3-phosphatase activity9.16E-04
35GO:0033201: alpha-1,4-glucan synthase activity9.16E-04
36GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.16E-04
37GO:0018708: thiol S-methyltransferase activity9.16E-04
38GO:0016630: protochlorophyllide reductase activity9.16E-04
39GO:0008934: inositol monophosphate 1-phosphatase activity9.16E-04
40GO:0052833: inositol monophosphate 4-phosphatase activity9.16E-04
41GO:0004412: homoserine dehydrogenase activity9.16E-04
42GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.16E-04
43GO:0000234: phosphoethanolamine N-methyltransferase activity9.16E-04
44GO:0008967: phosphoglycolate phosphatase activity9.16E-04
45GO:0047746: chlorophyllase activity9.16E-04
46GO:0042389: omega-3 fatty acid desaturase activity9.16E-04
47GO:0010297: heteropolysaccharide binding9.16E-04
48GO:0003839: gamma-glutamylcyclotransferase activity9.16E-04
49GO:0016491: oxidoreductase activity1.12E-03
50GO:0047372: acylglycerol lipase activity1.16E-03
51GO:0016168: chlorophyll binding1.27E-03
52GO:0008168: methyltransferase activity1.38E-03
53GO:0010277: chlorophyllide a oxygenase [overall] activity1.49E-03
54GO:0005310: dicarboxylic acid transmembrane transporter activity1.49E-03
55GO:0004373: glycogen (starch) synthase activity1.49E-03
56GO:0050734: hydroxycinnamoyltransferase activity1.49E-03
57GO:0090729: toxin activity1.49E-03
58GO:0002161: aminoacyl-tRNA editing activity1.49E-03
59GO:0004751: ribose-5-phosphate isomerase activity1.49E-03
60GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.49E-03
61GO:0008864: formyltetrahydrofolate deformylase activity1.49E-03
62GO:0004072: aspartate kinase activity2.15E-03
63GO:0004375: glycine dehydrogenase (decarboxylating) activity2.15E-03
64GO:0019201: nucleotide kinase activity2.15E-03
65GO:0016149: translation release factor activity, codon specific2.15E-03
66GO:0022890: inorganic cation transmembrane transporter activity2.15E-03
67GO:0017077: oxidative phosphorylation uncoupler activity2.15E-03
68GO:0008453: alanine-glyoxylate transaminase activity2.89E-03
69GO:0045430: chalcone isomerase activity2.89E-03
70GO:0009011: starch synthase activity2.89E-03
71GO:0051537: 2 iron, 2 sulfur cluster binding3.42E-03
72GO:0003959: NADPH dehydrogenase activity3.71E-03
73GO:0003989: acetyl-CoA carboxylase activity3.71E-03
74GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.59E-03
75GO:0004784: superoxide dismutase activity4.59E-03
76GO:0016615: malate dehydrogenase activity4.59E-03
77GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.59E-03
78GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.53E-03
79GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.53E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.53E-03
81GO:0004017: adenylate kinase activity5.53E-03
82GO:0030060: L-malate dehydrogenase activity5.53E-03
83GO:0048038: quinone binding5.80E-03
84GO:0016597: amino acid binding7.94E-03
85GO:0003735: structural constituent of ribosome8.51E-03
86GO:0008271: secondary active sulfate transmembrane transporter activity8.73E-03
87GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.73E-03
88GO:0102483: scopolin beta-glucosidase activity9.92E-03
89GO:0003747: translation release factor activity9.92E-03
90GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.12E-02
91GO:0005384: manganese ion transmembrane transporter activity1.12E-02
92GO:0016844: strictosidine synthase activity1.12E-02
93GO:0004222: metalloendopeptidase activity1.21E-02
94GO:0008047: enzyme activator activity1.24E-02
95GO:0030234: enzyme regulator activity1.24E-02
96GO:0015386: potassium:proton antiporter activity1.38E-02
97GO:0008559: xenobiotic-transporting ATPase activity1.38E-02
98GO:0003993: acid phosphatase activity1.46E-02
99GO:0015116: sulfate transmembrane transporter activity1.52E-02
100GO:0000049: tRNA binding1.52E-02
101GO:0008422: beta-glucosidase activity1.53E-02
102GO:0003725: double-stranded RNA binding1.66E-02
103GO:0004565: beta-galactosidase activity1.66E-02
104GO:0004022: alcohol dehydrogenase (NAD) activity1.66E-02
105GO:0015095: magnesium ion transmembrane transporter activity1.66E-02
106GO:0031072: heat shock protein binding1.66E-02
107GO:0003774: motor activity1.81E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.81E-02
109GO:0008266: poly(U) RNA binding1.81E-02
110GO:0051536: iron-sulfur cluster binding2.29E-02
111GO:0031418: L-ascorbic acid binding2.29E-02
112GO:0015079: potassium ion transmembrane transporter activity2.45E-02
113GO:0003727: single-stranded RNA binding3.16E-02
114GO:0004812: aminoacyl-tRNA ligase activity3.34E-02
115GO:0047134: protein-disulfide reductase activity3.34E-02
116GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.73E-02
117GO:0004791: thioredoxin-disulfide reductase activity3.93E-02
118GO:0016853: isomerase activity3.93E-02
119GO:0015299: solute:proton antiporter activity3.93E-02
120GO:0050662: coenzyme binding3.93E-02
121GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.45E-02
122GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.75E-02
123GO:0030170: pyridoxal phosphate binding4.80E-02
124GO:0016791: phosphatase activity4.96E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0005835: fatty acid synthase complex0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0042579: microbody0.00E+00
5GO:0009507: chloroplast2.80E-62
6GO:0009535: chloroplast thylakoid membrane1.69E-44
7GO:0009534: chloroplast thylakoid1.07E-33
8GO:0009579: thylakoid4.27E-24
9GO:0009941: chloroplast envelope1.48E-22
10GO:0009543: chloroplast thylakoid lumen2.59E-21
11GO:0009570: chloroplast stroma3.11E-20
12GO:0031977: thylakoid lumen1.45E-16
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.39E-09
14GO:0031969: chloroplast membrane1.25E-08
15GO:0010287: plastoglobule4.74E-06
16GO:0009654: photosystem II oxygen evolving complex1.46E-05
17GO:0010007: magnesium chelatase complex2.76E-05
18GO:0019898: extrinsic component of membrane6.50E-05
19GO:0030095: chloroplast photosystem II1.41E-04
20GO:0030076: light-harvesting complex1.67E-04
21GO:0005840: ribosome1.86E-04
22GO:0042651: thylakoid membrane2.60E-04
23GO:0009515: granal stacked thylakoid4.23E-04
24GO:0005787: signal peptidase complex4.23E-04
25GO:0009344: nitrite reductase complex [NAD(P)H]4.23E-04
26GO:0009547: plastid ribosome4.23E-04
27GO:0000427: plastid-encoded plastid RNA polymerase complex9.16E-04
28GO:0010319: stromule1.02E-03
29GO:0033281: TAT protein transport complex1.49E-03
30GO:0009317: acetyl-CoA carboxylase complex1.49E-03
31GO:0005960: glycine cleavage complex2.15E-03
32GO:0009517: PSII associated light-harvesting complex II2.89E-03
33GO:0009544: chloroplast ATP synthase complex2.89E-03
34GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.59E-03
35GO:0009522: photosystem I5.05E-03
36GO:0009523: photosystem II5.42E-03
37GO:0009706: chloroplast inner membrane7.11E-03
38GO:0031982: vesicle7.60E-03
39GO:0009501: amyloplast7.60E-03
40GO:0005763: mitochondrial small ribosomal subunit9.92E-03
41GO:0016459: myosin complex1.24E-02
42GO:0032040: small-subunit processome1.52E-02
43GO:0000311: plastid large ribosomal subunit1.52E-02
44GO:0015935: small ribosomal subunit2.62E-02
45GO:0048046: apoplast3.32E-02
46GO:0005623: cell4.45E-02
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Gene type



Gene DE type