Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G15980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0046471: phosphatidylglycerol metabolic process0.00E+00
8GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
9GO:1905157: positive regulation of photosynthesis0.00E+00
10GO:1901918: negative regulation of exoribonuclease activity0.00E+00
11GO:0015995: chlorophyll biosynthetic process7.56E-10
12GO:0015979: photosynthesis1.94E-08
13GO:0009773: photosynthetic electron transport in photosystem I3.29E-08
14GO:0090391: granum assembly7.08E-08
15GO:0010207: photosystem II assembly1.07E-07
16GO:0010196: nonphotochemical quenching1.15E-05
17GO:0032544: plastid translation2.45E-05
18GO:0055114: oxidation-reduction process3.01E-05
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.66E-05
20GO:0071484: cellular response to light intensity5.66E-05
21GO:0015994: chlorophyll metabolic process9.96E-05
22GO:0006094: gluconeogenesis1.10E-04
23GO:0010143: cutin biosynthetic process1.31E-04
24GO:0006810: transport1.36E-04
25GO:0006636: unsaturated fatty acid biosynthetic process1.83E-04
26GO:0010190: cytochrome b6f complex assembly2.21E-04
27GO:0042549: photosystem II stabilization2.21E-04
28GO:0009768: photosynthesis, light harvesting in photosystem I2.43E-04
29GO:1901259: chloroplast rRNA processing2.97E-04
30GO:0009854: oxidative photosynthetic carbon pathway2.97E-04
31GO:0009853: photorespiration3.17E-04
32GO:0009772: photosynthetic electron transport in photosystem II3.84E-04
33GO:0005980: glycogen catabolic process4.10E-04
34GO:0046467: membrane lipid biosynthetic process4.10E-04
35GO:0015671: oxygen transport4.10E-04
36GO:0019544: arginine catabolic process to glutamate4.10E-04
37GO:0071277: cellular response to calcium ion4.10E-04
38GO:0080093: regulation of photorespiration4.10E-04
39GO:0031998: regulation of fatty acid beta-oxidation4.10E-04
40GO:0010028: xanthophyll cycle4.10E-04
41GO:0034337: RNA folding4.10E-04
42GO:0006835: dicarboxylic acid transport4.10E-04
43GO:0000023: maltose metabolic process4.10E-04
44GO:0000025: maltose catabolic process4.10E-04
45GO:0010114: response to red light4.76E-04
46GO:0006098: pentose-phosphate shunt7.02E-04
47GO:0010206: photosystem II repair7.02E-04
48GO:0006783: heme biosynthetic process7.02E-04
49GO:0080029: cellular response to boron-containing substance levels8.88E-04
50GO:0005976: polysaccharide metabolic process8.88E-04
51GO:0006898: receptor-mediated endocytosis8.88E-04
52GO:0071457: cellular response to ozone8.88E-04
53GO:0016122: xanthophyll metabolic process8.88E-04
54GO:0006729: tetrahydrobiopterin biosynthetic process8.88E-04
55GO:0030388: fructose 1,6-bisphosphate metabolic process8.88E-04
56GO:0006782: protoporphyrinogen IX biosynthetic process9.63E-04
57GO:0010027: thylakoid membrane organization1.11E-03
58GO:0006000: fructose metabolic process1.44E-03
59GO:0006518: peptide metabolic process1.44E-03
60GO:0019253: reductive pentose-phosphate cycle1.62E-03
61GO:0080167: response to karrikin1.99E-03
62GO:0009052: pentose-phosphate shunt, non-oxidative branch2.08E-03
63GO:0046713: borate transport2.08E-03
64GO:1902358: sulfate transmembrane transport2.08E-03
65GO:0006020: inositol metabolic process2.08E-03
66GO:0009152: purine ribonucleotide biosynthetic process2.08E-03
67GO:0046653: tetrahydrofolate metabolic process2.08E-03
68GO:0006633: fatty acid biosynthetic process2.56E-03
69GO:0006631: fatty acid metabolic process2.62E-03
70GO:0061077: chaperone-mediated protein folding2.73E-03
71GO:0009735: response to cytokinin2.73E-03
72GO:0006021: inositol biosynthetic process2.80E-03
73GO:0071483: cellular response to blue light2.80E-03
74GO:0071486: cellular response to high light intensity2.80E-03
75GO:0009765: photosynthesis, light harvesting2.80E-03
76GO:0045727: positive regulation of translation2.80E-03
77GO:0071493: cellular response to UV-B3.59E-03
78GO:0006656: phosphatidylcholine biosynthetic process3.59E-03
79GO:0006564: L-serine biosynthetic process3.59E-03
80GO:0009904: chloroplast accumulation movement3.59E-03
81GO:0006097: glyoxylate cycle3.59E-03
82GO:0006465: signal peptide processing3.59E-03
83GO:0032259: methylation3.67E-03
84GO:0042631: cellular response to water deprivation4.15E-03
85GO:0006364: rRNA processing4.26E-03
86GO:1902456: regulation of stomatal opening4.44E-03
87GO:0009228: thiamine biosynthetic process4.44E-03
88GO:0046855: inositol phosphate dephosphorylation4.44E-03
89GO:0009643: photosynthetic acclimation4.44E-03
90GO:0010304: PSII associated light-harvesting complex II catabolic process4.44E-03
91GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.44E-03
92GO:0006096: glycolytic process5.28E-03
93GO:0009903: chloroplast avoidance movement5.35E-03
94GO:0010189: vitamin E biosynthetic process5.35E-03
95GO:0009955: adaxial/abaxial pattern specification5.35E-03
96GO:0071333: cellular response to glucose stimulus5.35E-03
97GO:0009658: chloroplast organization5.77E-03
98GO:0042254: ribosome biogenesis5.94E-03
99GO:0009645: response to low light intensity stimulus6.32E-03
100GO:0008272: sulfate transport6.32E-03
101GO:0009769: photosynthesis, light harvesting in photosystem II6.32E-03
102GO:0019827: stem cell population maintenance7.35E-03
103GO:0030091: protein repair7.35E-03
104GO:0009642: response to light intensity7.35E-03
105GO:0009704: de-etiolation7.35E-03
106GO:0019430: removal of superoxide radicals8.43E-03
107GO:0009657: plastid organization8.43E-03
108GO:0006002: fructose 6-phosphate metabolic process8.43E-03
109GO:0071482: cellular response to light stimulus8.43E-03
110GO:0015996: chlorophyll catabolic process8.43E-03
111GO:0009409: response to cold8.58E-03
112GO:0009821: alkaloid biosynthetic process9.58E-03
113GO:0090333: regulation of stomatal closure9.58E-03
114GO:0019432: triglyceride biosynthetic process9.58E-03
115GO:0006754: ATP biosynthetic process9.58E-03
116GO:0018298: protein-chromophore linkage1.05E-02
117GO:0005982: starch metabolic process1.08E-02
118GO:0009416: response to light stimulus1.08E-02
119GO:0010205: photoinhibition1.08E-02
120GO:0006779: porphyrin-containing compound biosynthetic process1.08E-02
121GO:0005975: carbohydrate metabolic process1.10E-02
122GO:0009813: flavonoid biosynthetic process1.10E-02
123GO:0010218: response to far red light1.16E-02
124GO:0009641: shade avoidance1.20E-02
125GO:0043085: positive regulation of catalytic activity1.33E-02
126GO:0006415: translational termination1.33E-02
127GO:0000272: polysaccharide catabolic process1.33E-02
128GO:0018119: peptidyl-cysteine S-nitrosylation1.33E-02
129GO:0009637: response to blue light1.33E-02
130GO:0034599: cellular response to oxidative stress1.39E-02
131GO:0005983: starch catabolic process1.47E-02
132GO:0016024: CDP-diacylglycerol biosynthetic process1.47E-02
133GO:0006790: sulfur compound metabolic process1.47E-02
134GO:0030048: actin filament-based movement1.61E-02
135GO:0006108: malate metabolic process1.61E-02
136GO:0006006: glucose metabolic process1.61E-02
137GO:0018107: peptidyl-threonine phosphorylation1.61E-02
138GO:0009725: response to hormone1.61E-02
139GO:0009767: photosynthetic electron transport chain1.61E-02
140GO:0005986: sucrose biosynthetic process1.61E-02
141GO:0007015: actin filament organization1.75E-02
142GO:0010223: secondary shoot formation1.75E-02
143GO:0009266: response to temperature stimulus1.75E-02
144GO:0005985: sucrose metabolic process1.90E-02
145GO:0046854: phosphatidylinositol phosphorylation1.90E-02
146GO:0010025: wax biosynthetic process2.05E-02
147GO:0006418: tRNA aminoacylation for protein translation2.37E-02
148GO:0016114: terpenoid biosynthetic process2.53E-02
149GO:0019915: lipid storage2.53E-02
150GO:0009269: response to desiccation2.53E-02
151GO:0016226: iron-sulfur cluster assembly2.70E-02
152GO:0030433: ubiquitin-dependent ERAD pathway2.70E-02
153GO:0019748: secondary metabolic process2.70E-02
154GO:0071215: cellular response to abscisic acid stimulus2.87E-02
155GO:0046686: response to cadmium ion2.99E-02
156GO:0016117: carotenoid biosynthetic process3.23E-02
157GO:0070417: cellular response to cold3.23E-02
158GO:0042335: cuticle development3.41E-02
159GO:0000413: protein peptidyl-prolyl isomerization3.41E-02
160GO:0006520: cellular amino acid metabolic process3.60E-02
161GO:0071472: cellular response to salt stress3.60E-02
162GO:0006662: glycerol ether metabolic process3.60E-02
163GO:0009741: response to brassinosteroid3.60E-02
164GO:0015986: ATP synthesis coupled proton transport3.79E-02
165GO:0019252: starch biosynthetic process3.99E-02
166GO:0009058: biosynthetic process4.35E-02
167GO:0032502: developmental process4.38E-02
168GO:0009630: gravitropism4.38E-02
169GO:1901657: glycosyl compound metabolic process4.59E-02
170GO:0006629: lipid metabolic process4.93E-02
RankGO TermAdjusted P value
1GO:0046422: violaxanthin de-epoxidase activity0.00E+00
2GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0008887: glycerate kinase activity0.00E+00
5GO:0045550: geranylgeranyl reductase activity0.00E+00
6GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
9GO:0008465: glycerate dehydrogenase activity0.00E+00
10GO:0046408: chlorophyll synthetase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
13GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
14GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
15GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
16GO:0019843: rRNA binding4.84E-06
17GO:0010297: heteropolysaccharide binding7.51E-06
18GO:0009011: starch synthase activity9.96E-05
19GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.96E-05
20GO:0004565: beta-galactosidase activity1.10E-04
21GO:0031409: pigment binding1.83E-04
22GO:0005528: FK506 binding2.12E-04
23GO:0004332: fructose-bisphosphate aldolase activity2.21E-04
24GO:0004134: 4-alpha-glucanotransferase activity4.10E-04
25GO:0004645: phosphorylase activity4.10E-04
26GO:0009374: biotin binding4.10E-04
27GO:0034256: chlorophyll(ide) b reductase activity4.10E-04
28GO:0004853: uroporphyrinogen decarboxylase activity4.10E-04
29GO:0015168: glycerol transmembrane transporter activity4.10E-04
30GO:0045485: omega-6 fatty acid desaturase activity4.10E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.10E-04
32GO:0031957: very long-chain fatty acid-CoA ligase activity4.10E-04
33GO:0045486: naringenin 3-dioxygenase activity4.10E-04
34GO:0005344: oxygen transporter activity4.10E-04
35GO:0035671: enone reductase activity4.10E-04
36GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.10E-04
37GO:0008184: glycogen phosphorylase activity4.10E-04
38GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.05E-04
39GO:0048038: quinone binding7.01E-04
40GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.88E-04
41GO:0008934: inositol monophosphate 1-phosphatase activity8.88E-04
42GO:0019172: glyoxalase III activity8.88E-04
43GO:0052833: inositol monophosphate 4-phosphatase activity8.88E-04
44GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.88E-04
45GO:0000234: phosphoethanolamine N-methyltransferase activity8.88E-04
46GO:0008967: phosphoglycolate phosphatase activity8.88E-04
47GO:0008883: glutamyl-tRNA reductase activity8.88E-04
48GO:0047746: chlorophyllase activity8.88E-04
49GO:0042389: omega-3 fatty acid desaturase activity8.88E-04
50GO:0004617: phosphoglycerate dehydrogenase activity8.88E-04
51GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity8.88E-04
52GO:0052832: inositol monophosphate 3-phosphatase activity8.88E-04
53GO:0033201: alpha-1,4-glucan synthase activity8.88E-04
54GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.88E-04
55GO:0018708: thiol S-methyltransferase activity8.88E-04
56GO:0030234: enzyme regulator activity9.63E-04
57GO:0016491: oxidoreductase activity9.92E-04
58GO:0047372: acylglycerol lipase activity1.11E-03
59GO:0016168: chlorophyll binding1.19E-03
60GO:0005310: dicarboxylic acid transmembrane transporter activity1.44E-03
61GO:0004373: glycogen (starch) synthase activity1.44E-03
62GO:0050734: hydroxycinnamoyltransferase activity1.44E-03
63GO:0002161: aminoacyl-tRNA editing activity1.44E-03
64GO:0004751: ribose-5-phosphate isomerase activity1.44E-03
65GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.44E-03
66GO:0008864: formyltetrahydrofolate deformylase activity1.44E-03
67GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.44E-03
68GO:0010277: chlorophyllide a oxygenase [overall] activity1.44E-03
69GO:0008266: poly(U) RNA binding1.62E-03
70GO:0016149: translation release factor activity, codon specific2.08E-03
71GO:0022890: inorganic cation transmembrane transporter activity2.08E-03
72GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.08E-03
73GO:0016851: magnesium chelatase activity2.08E-03
74GO:0046715: borate transmembrane transporter activity2.08E-03
75GO:0017077: oxidative phosphorylation uncoupler activity2.08E-03
76GO:0019201: nucleotide kinase activity2.08E-03
77GO:0045430: chalcone isomerase activity2.80E-03
78GO:0015204: urea transmembrane transporter activity2.80E-03
79GO:0008453: alanine-glyoxylate transaminase activity2.80E-03
80GO:0051537: 2 iron, 2 sulfur cluster binding3.22E-03
81GO:0003989: acetyl-CoA carboxylase activity3.59E-03
82GO:0051287: NAD binding3.72E-03
83GO:0004462: lactoylglutathione lyase activity4.44E-03
84GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.44E-03
85GO:0004784: superoxide dismutase activity4.44E-03
86GO:0016615: malate dehydrogenase activity4.44E-03
87GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.44E-03
88GO:2001070: starch binding4.44E-03
89GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.35E-03
90GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.35E-03
91GO:0004017: adenylate kinase activity5.35E-03
92GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.35E-03
93GO:0102391: decanoate--CoA ligase activity5.35E-03
94GO:0030060: L-malate dehydrogenase activity5.35E-03
95GO:0008168: methyltransferase activity5.45E-03
96GO:0004467: long-chain fatty acid-CoA ligase activity6.32E-03
97GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.43E-03
98GO:0008271: secondary active sulfate transmembrane transporter activity8.43E-03
99GO:0003747: translation release factor activity9.58E-03
100GO:0016844: strictosidine synthase activity1.08E-02
101GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.08E-02
102GO:0008047: enzyme activator activity1.20E-02
103GO:0015386: potassium:proton antiporter activity1.33E-02
104GO:0000049: tRNA binding1.47E-02
105GO:0015116: sulfate transmembrane transporter activity1.47E-02
106GO:0050661: NADP binding1.52E-02
107GO:0003725: double-stranded RNA binding1.61E-02
108GO:0004022: alcohol dehydrogenase (NAD) activity1.61E-02
109GO:0031072: heat shock protein binding1.61E-02
110GO:0004185: serine-type carboxypeptidase activity1.72E-02
111GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.75E-02
112GO:0003774: motor activity1.75E-02
113GO:0042802: identical protein binding1.82E-02
114GO:0003735: structural constituent of ribosome1.94E-02
115GO:0051536: iron-sulfur cluster binding2.21E-02
116GO:0031418: L-ascorbic acid binding2.21E-02
117GO:0016787: hydrolase activity2.25E-02
118GO:0015079: potassium ion transmembrane transporter activity2.37E-02
119GO:0003727: single-stranded RNA binding3.05E-02
120GO:0047134: protein-disulfide reductase activity3.23E-02
121GO:0004812: aminoacyl-tRNA ligase activity3.23E-02
122GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.60E-02
123GO:0015299: solute:proton antiporter activity3.79E-02
124GO:0050662: coenzyme binding3.79E-02
125GO:0004791: thioredoxin-disulfide reductase activity3.79E-02
126GO:0016853: isomerase activity3.79E-02
127GO:0004872: receptor activity3.99E-02
128GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.24E-02
129GO:0030170: pyridoxal phosphate binding4.58E-02
130GO:0000156: phosphorelay response regulator activity4.59E-02
131GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.59E-02
132GO:0016791: phosphatase activity4.79E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0009507: chloroplast5.49E-59
5GO:0009535: chloroplast thylakoid membrane1.15E-43
6GO:0009534: chloroplast thylakoid1.63E-35
7GO:0009941: chloroplast envelope4.36E-26
8GO:0009579: thylakoid2.26E-24
9GO:0009543: chloroplast thylakoid lumen2.49E-18
10GO:0009570: chloroplast stroma9.11E-18
11GO:0031977: thylakoid lumen1.99E-13
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.34E-09
13GO:0031969: chloroplast membrane1.25E-07
14GO:0010287: plastoglobule2.78E-07
15GO:0009654: photosystem II oxygen evolving complex1.32E-05
16GO:0019898: extrinsic component of membrane5.94E-05
17GO:0010319: stromule1.09E-04
18GO:0030095: chloroplast photosystem II1.31E-04
19GO:0030076: light-harvesting complex1.56E-04
20GO:0042651: thylakoid membrane2.43E-04
21GO:0048046: apoplast3.53E-04
22GO:0005787: signal peptidase complex4.10E-04
23GO:0009344: nitrite reductase complex [NAD(P)H]4.10E-04
24GO:0009547: plastid ribosome4.10E-04
25GO:0031357: integral component of chloroplast inner membrane8.88E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex8.88E-04
27GO:0009706: chloroplast inner membrane1.28E-03
28GO:0010007: magnesium chelatase complex1.44E-03
29GO:0009317: acetyl-CoA carboxylase complex1.44E-03
30GO:0005840: ribosome1.66E-03
31GO:0009517: PSII associated light-harvesting complex II2.80E-03
32GO:0009544: chloroplast ATP synthase complex2.80E-03
33GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.44E-03
34GO:0009522: photosystem I4.81E-03
35GO:0009523: photosystem II5.16E-03
36GO:0031982: vesicle7.35E-03
37GO:0009501: amyloplast7.35E-03
38GO:0005763: mitochondrial small ribosomal subunit9.58E-03
39GO:0016459: myosin complex1.20E-02
40GO:0000311: plastid large ribosomal subunit1.47E-02
41GO:0032040: small-subunit processome1.47E-02
42GO:0043234: protein complex2.05E-02
43GO:0015935: small ribosomal subunit2.53E-02
44GO:0016021: integral component of membrane3.41E-02
45GO:0005777: peroxisome4.13E-02
46GO:0005623: cell4.24E-02
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Gene type



Gene DE type