co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G15885

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042821: pyridoxal biosynthetic process	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0042820: vitamin B6 catabolic process	0.00E+00
4	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:0008298: intracellular mRNA localization	0.00E+00
7	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
8	GO:0071474: cellular hyperosmotic response	0.00E+00
9	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
10	GO:0070979: protein K11-linked ubiquitination	0.00E+00
11	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
12	GO:0043488: regulation of mRNA stability	0.00E+00
13	GO:0030155: regulation of cell adhesion	0.00E+00
14	GO:0090279: regulation of calcium ion import	0.00E+00
15	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
16	GO:0015979: photosynthesis	1.50E-06
17	GO:0071482: cellular response to light stimulus	2.01E-05
18	GO:0005977: glycogen metabolic process	2.24E-05
19	GO:2001141: regulation of RNA biosynthetic process	4.92E-05
20	GO:0010021: amylopectin biosynthetic process	8.71E-05
21	GO:0010027: thylakoid membrane organization	1.08E-04
22	GO:0045038: protein import into chloroplast thylakoid membrane	1.36E-04
23	GO:0009658: chloroplast organization	2.34E-04
24	GO:0043266: regulation of potassium ion transport	3.78E-04
25	GO:0051775: response to redox state	3.78E-04
26	GO:0000481: maturation of 5S rRNA	3.78E-04
27	GO:0006659: phosphatidylserine biosynthetic process	3.78E-04
28	GO:0042371: vitamin K biosynthetic process	3.78E-04
29	GO:0071461: cellular response to redox state	3.78E-04
30	GO:2000021: regulation of ion homeostasis	3.78E-04
31	GO:0051247: positive regulation of protein metabolic process	3.78E-04
32	GO:0034337: RNA folding	3.78E-04
33	GO:2000905: negative regulation of starch metabolic process	3.78E-04
34	GO:0009443: pyridoxal 5'-phosphate salvage	3.78E-04
35	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.78E-04
36	GO:0031426: polycistronic mRNA processing	3.78E-04
37	GO:0048564: photosystem I assembly	4.26E-04
38	GO:0019252: starch biosynthetic process	5.52E-04
39	GO:0032502: developmental process	6.55E-04
40	GO:1904143: positive regulation of carotenoid biosynthetic process	8.22E-04
41	GO:0010024: phytochromobilin biosynthetic process	8.22E-04
42	GO:0051262: protein tetramerization	8.22E-04
43	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.22E-04
44	GO:0080005: photosystem stoichiometry adjustment	8.22E-04
45	GO:0060359: response to ammonium ion	8.22E-04
46	GO:0006415: translational termination	9.90E-04
47	GO:0006352: DNA-templated transcription, initiation	9.90E-04
48	GO:0019684: photosynthesis, light reaction	9.90E-04
49	GO:0043085: positive regulation of catalytic activity	9.90E-04
50	GO:0009767: photosynthetic electron transport chain	1.28E-03
51	GO:0006788: heme oxidation	1.33E-03
52	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.33E-03
53	GO:0010623: programmed cell death involved in cell development	1.33E-03
54	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.33E-03
55	GO:0006760: folic acid-containing compound metabolic process	1.33E-03
56	GO:0043157: response to cation stress	1.33E-03
57	GO:0048281: inflorescence morphogenesis	1.33E-03
58	GO:0048586: regulation of long-day photoperiodism, flowering	1.33E-03
59	GO:0006954: inflammatory response	1.33E-03
60	GO:0010207: photosystem II assembly	1.44E-03
61	GO:0046739: transport of virus in multicellular host	1.92E-03
62	GO:0010148: transpiration	1.92E-03
63	GO:0006168: adenine salvage	1.92E-03
64	GO:0016556: mRNA modification	1.92E-03
65	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.92E-03
66	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.92E-03
67	GO:0006166: purine ribonucleoside salvage	1.92E-03
68	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.92E-03
69	GO:0006107: oxaloacetate metabolic process	1.92E-03
70	GO:0010239: chloroplast mRNA processing	1.92E-03
71	GO:0009226: nucleotide-sugar biosynthetic process	1.92E-03
72	GO:0051016: barbed-end actin filament capping	1.92E-03
73	GO:0010508: positive regulation of autophagy	2.58E-03
74	GO:0006021: inositol biosynthetic process	2.58E-03
75	GO:0006734: NADH metabolic process	2.58E-03
76	GO:0009765: photosynthesis, light harvesting	2.58E-03
77	GO:2000306: positive regulation of photomorphogenesis	2.58E-03
78	GO:0006109: regulation of carbohydrate metabolic process	2.58E-03
79	GO:0010107: potassium ion import	2.58E-03
80	GO:0031122: cytoplasmic microtubule organization	2.58E-03
81	GO:0006546: glycine catabolic process	2.58E-03
82	GO:0046656: folic acid biosynthetic process	2.58E-03
83	GO:0098719: sodium ion import across plasma membrane	3.30E-03
84	GO:0009107: lipoate biosynthetic process	3.30E-03
85	GO:0044209: AMP salvage	3.30E-03
86	GO:0080110: sporopollenin biosynthetic process	3.30E-03
87	GO:0032876: negative regulation of DNA endoreduplication	3.30E-03
88	GO:0006465: signal peptide processing	3.30E-03
89	GO:0010087: phloem or xylem histogenesis	3.68E-03
90	GO:0032973: amino acid export	4.08E-03
91	GO:0000741: karyogamy	4.08E-03
92	GO:0050665: hydrogen peroxide biosynthetic process	4.08E-03
93	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.08E-03
94	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.08E-03
95	GO:0009959: negative gravitropism	4.08E-03
96	GO:0006655: phosphatidylglycerol biosynthetic process	4.08E-03
97	GO:0010190: cytochrome b6f complex assembly	4.08E-03
98	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.08E-03
99	GO:0008654: phospholipid biosynthetic process	4.57E-03
100	GO:0009791: post-embryonic development	4.57E-03
101	GO:1901259: chloroplast rRNA processing	4.92E-03
102	GO:0046654: tetrahydrofolate biosynthetic process	4.92E-03
103	GO:0010189: vitamin E biosynthetic process	4.92E-03
104	GO:0009854: oxidative photosynthetic carbon pathway	4.92E-03
105	GO:0010019: chloroplast-nucleus signaling pathway	4.92E-03
106	GO:0080086: stamen filament development	4.92E-03
107	GO:0006400: tRNA modification	5.81E-03
108	GO:0010103: stomatal complex morphogenesis	5.81E-03
109	GO:0009395: phospholipid catabolic process	5.81E-03
110	GO:0043090: amino acid import	5.81E-03
111	GO:0051693: actin filament capping	5.81E-03
112	GO:0070370: cellular heat acclimation	5.81E-03
113	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.81E-03
114	GO:0009690: cytokinin metabolic process	6.75E-03
115	GO:0042255: ribosome assembly	6.75E-03
116	GO:0006605: protein targeting	6.75E-03
117	GO:0046620: regulation of organ growth	6.75E-03
118	GO:0006353: DNA-templated transcription, termination	6.75E-03
119	GO:0010078: maintenance of root meristem identity	6.75E-03
120	GO:0032875: regulation of DNA endoreduplication	6.75E-03
121	GO:0032508: DNA duplex unwinding	6.75E-03
122	GO:0055075: potassium ion homeostasis	6.75E-03
123	GO:0007155: cell adhesion	6.75E-03
124	GO:0010497: plasmodesmata-mediated intercellular transport	7.75E-03
125	GO:0009657: plastid organization	7.75E-03
126	GO:0010204: defense response signaling pathway, resistance gene-independent	7.75E-03
127	GO:0032544: plastid translation	7.75E-03
128	GO:0043562: cellular response to nitrogen levels	7.75E-03
129	GO:0017004: cytochrome complex assembly	7.75E-03
130	GO:0001558: regulation of cell growth	7.75E-03
131	GO:0009627: systemic acquired resistance	7.92E-03
132	GO:0015995: chlorophyll biosynthetic process	8.36E-03
133	GO:0090333: regulation of stomatal closure	8.79E-03
134	GO:0048507: meristem development	8.79E-03
135	GO:0000373: Group II intron splicing	8.79E-03
136	GO:0009051: pentose-phosphate shunt, oxidative branch	8.79E-03
137	GO:0010206: photosystem II repair	8.79E-03
138	GO:0080144: amino acid homeostasis	8.79E-03
139	GO:0018298: protein-chromophore linkage	9.27E-03
140	GO:0051453: regulation of intracellular pH	9.89E-03
141	GO:0019538: protein metabolic process	1.10E-02
142	GO:0009684: indoleacetic acid biosynthetic process	1.22E-02
143	GO:0009089: lysine biosynthetic process via diaminopimelate	1.22E-02
144	GO:0016024: CDP-diacylglycerol biosynthetic process	1.34E-02
145	GO:0006108: malate metabolic process	1.47E-02
146	GO:0030036: actin cytoskeleton organization	1.47E-02
147	GO:0010588: cotyledon vascular tissue pattern formation	1.47E-02
148	GO:0007015: actin filament organization	1.60E-02
149	GO:0048467: gynoecium development	1.60E-02
150	GO:0010030: positive regulation of seed germination	1.74E-02
151	GO:0019853: L-ascorbic acid biosynthetic process	1.74E-02
152	GO:0009944: polarity specification of adaxial/abaxial axis	2.02E-02
153	GO:0007017: microtubule-based process	2.17E-02
154	GO:0051302: regulation of cell division	2.17E-02
155	GO:0008299: isoprenoid biosynthetic process	2.17E-02
156	GO:0005975: carbohydrate metabolic process	2.27E-02
157	GO:0010431: seed maturation	2.32E-02
158	GO:0019915: lipid storage	2.32E-02
159	GO:0006096: glycolytic process	2.43E-02
160	GO:0006730: one-carbon metabolic process	2.48E-02
161	GO:0009686: gibberellin biosynthetic process	2.64E-02
162	GO:0001944: vasculature development	2.64E-02
163	GO:0006012: galactose metabolic process	2.64E-02
164	GO:0019722: calcium-mediated signaling	2.80E-02
165	GO:0009561: megagametogenesis	2.80E-02
166	GO:0009306: protein secretion	2.80E-02
167	GO:0010089: xylem development	2.80E-02
168	GO:0010584: pollen exine formation	2.80E-02
169	GO:0009416: response to light stimulus	2.83E-02
170	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.96E-02
171	GO:0080022: primary root development	3.13E-02
172	GO:0008033: tRNA processing	3.13E-02
173	GO:0042631: cellular response to water deprivation	3.13E-02
174	GO:0006662: glycerol ether metabolic process	3.30E-02
175	GO:0010197: polar nucleus fusion	3.30E-02
176	GO:0048868: pollen tube development	3.30E-02
177	GO:0009741: response to brassinosteroid	3.30E-02
178	GO:0010268: brassinosteroid homeostasis	3.30E-02
179	GO:0009958: positive gravitropism	3.30E-02
180	GO:0006885: regulation of pH	3.30E-02
181	GO:0045489: pectin biosynthetic process	3.30E-02
182	GO:0055114: oxidation-reduction process	3.38E-02
183	GO:0006814: sodium ion transport	3.48E-02
184	GO:0009646: response to absence of light	3.48E-02
185	GO:0009851: auxin biosynthetic process	3.66E-02
186	GO:0048825: cotyledon development	3.66E-02
187	GO:0016132: brassinosteroid biosynthetic process	3.83E-02
188	GO:0009630: gravitropism	4.02E-02
189	GO:0010583: response to cyclopentenone	4.02E-02
190	GO:0006629: lipid metabolic process	4.26E-02
191	GO:0016125: sterol metabolic process	4.40E-02
192	GO:0007267: cell-cell signaling	4.59E-02
193	GO:0006413: translational initiation	4.69E-02
194	GO:0016126: sterol biosynthetic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
7	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
8	GO:0050613: delta14-sterol reductase activity	0.00E+00
9	GO:0019156: isoamylase activity	6.42E-06
10	GO:0019899: enzyme binding	9.38E-06
11	GO:0070402: NADPH binding	2.24E-05
12	GO:0043495: protein anchor	8.71E-05
13	GO:0001053: plastid sigma factor activity	8.71E-05
14	GO:0016987: sigma factor activity	8.71E-05
15	GO:0004556: alpha-amylase activity	1.95E-04
16	GO:0003993: acid phosphatase activity	2.81E-04
17	GO:0005080: protein kinase C binding	3.78E-04
18	GO:0008746: NAD(P)+ transhydrogenase activity	3.78E-04
19	GO:0004328: formamidase activity	3.78E-04
20	GO:0046906: tetrapyrrole binding	3.78E-04
21	GO:0005227: calcium activated cation channel activity	3.78E-04
22	GO:0051777: ent-kaurenoate oxidase activity	3.78E-04
23	GO:0008568: microtubule-severing ATPase activity	3.78E-04
24	GO:0004033: aldo-keto reductase (NADP) activity	4.26E-04
25	GO:0003747: translation release factor activity	6.25E-04
26	GO:0004802: transketolase activity	8.22E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.22E-04
28	GO:0004512: inositol-3-phosphate synthase activity	8.22E-04
29	GO:0048531: beta-1,3-galactosyltransferase activity	8.22E-04
30	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	8.22E-04
31	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.22E-04
32	GO:0004047: aminomethyltransferase activity	8.22E-04
33	GO:0102083: 7,8-dihydromonapterin aldolase activity	8.22E-04
34	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.22E-04
35	GO:0004150: dihydroneopterin aldolase activity	8.22E-04
36	GO:0016992: lipoate synthase activity	1.33E-03
37	GO:0016149: translation release factor activity, codon specific	1.92E-03
38	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.92E-03
39	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.92E-03
40	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.92E-03
41	GO:0016851: magnesium chelatase activity	1.92E-03
42	GO:0017057: 6-phosphogluconolactonase activity	1.92E-03
43	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.92E-03
44	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.92E-03
45	GO:0048027: mRNA 5'-UTR binding	1.92E-03
46	GO:0003999: adenine phosphoribosyltransferase activity	1.92E-03
47	GO:0005528: FK506 binding	1.99E-03
48	GO:0016491: oxidoreductase activity	2.14E-03
49	GO:0019199: transmembrane receptor protein kinase activity	2.58E-03
50	GO:0042277: peptide binding	2.58E-03
51	GO:0004392: heme oxygenase (decyclizing) activity	2.58E-03
52	GO:0008891: glycolate oxidase activity	2.58E-03
53	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.58E-03
54	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.58E-03
55	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.58E-03
56	GO:0004045: aminoacyl-tRNA hydrolase activity	2.58E-03
57	GO:0080032: methyl jasmonate esterase activity	2.58E-03
58	GO:0009011: starch synthase activity	2.58E-03
59	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.58E-03
60	GO:0022891: substrate-specific transmembrane transporter activity	2.89E-03
61	GO:0030570: pectate lyase activity	2.89E-03
62	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.30E-03
63	GO:0008374: O-acyltransferase activity	3.30E-03
64	GO:0016846: carbon-sulfur lyase activity	3.30E-03
65	GO:0004462: lactoylglutathione lyase activity	4.08E-03
66	GO:0015081: sodium ion transmembrane transporter activity	4.08E-03
67	GO:0016615: malate dehydrogenase activity	4.08E-03
68	GO:0008200: ion channel inhibitor activity	4.08E-03
69	GO:0004605: phosphatidate cytidylyltransferase activity	4.08E-03
70	GO:0080030: methyl indole-3-acetate esterase activity	4.08E-03
71	GO:0003824: catalytic activity	4.19E-03
72	GO:0048038: quinone binding	4.89E-03
73	GO:0030060: L-malate dehydrogenase activity	4.92E-03
74	GO:0003730: mRNA 3'-UTR binding	4.92E-03
75	GO:0005261: cation channel activity	4.92E-03
76	GO:0008195: phosphatidate phosphatase activity	4.92E-03
77	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.92E-03
78	GO:0016788: hydrolase activity, acting on ester bonds	4.94E-03
79	GO:0008312: 7S RNA binding	6.75E-03
80	GO:0016168: chlorophyll binding	7.50E-03
81	GO:0016829: lyase activity	8.44E-03
82	GO:0030955: potassium ion binding	9.89E-03
83	GO:0004743: pyruvate kinase activity	9.89E-03
84	GO:0004222: metalloendopeptidase activity	1.02E-02
85	GO:0008047: enzyme activator activity	1.10E-02
86	GO:0015020: glucuronosyltransferase activity	1.10E-02
87	GO:0015386: potassium:proton antiporter activity	1.22E-02
88	GO:0008378: galactosyltransferase activity	1.34E-02
89	GO:0008081: phosphoric diester hydrolase activity	1.47E-02
90	GO:0031072: heat shock protein binding	1.47E-02
91	GO:0042802: identical protein binding	1.56E-02
92	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.60E-02
93	GO:0035091: phosphatidylinositol binding	1.65E-02
94	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.78E-02
95	GO:0004857: enzyme inhibitor activity	2.02E-02
96	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.05E-02
97	GO:0003690: double-stranded DNA binding	2.13E-02
98	GO:0004176: ATP-dependent peptidase activity	2.32E-02
99	GO:0005509: calcium ion binding	2.55E-02
100	GO:0003727: single-stranded RNA binding	2.80E-02
101	GO:0003723: RNA binding	2.95E-02
102	GO:0047134: protein-disulfide reductase activity	2.96E-02
103	GO:0016746: transferase activity, transferring acyl groups	3.01E-02
104	GO:0008080: N-acetyltransferase activity	3.30E-02
105	GO:0050662: coenzyme binding	3.48E-02
106	GO:0010181: FMN binding	3.48E-02
107	GO:0004791: thioredoxin-disulfide reductase activity	3.48E-02
108	GO:0016853: isomerase activity	3.48E-02
109	GO:0019843: rRNA binding	3.66E-02
110	GO:0015385: sodium:proton antiporter activity	4.21E-02
111	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.21E-02
112	GO:0003924: GTPase activity	4.26E-02
113	GO:0008237: metallopeptidase activity	4.59E-02
114	GO:0005200: structural constituent of cytoskeleton	4.59E-02
115	GO:0008483: transaminase activity	4.59E-02
116	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.89E-34
3	GO:0009570: chloroplast stroma	4.86E-14
4	GO:0009535: chloroplast thylakoid membrane	1.00E-12
5	GO:0009579: thylakoid	2.04E-07
6	GO:0009543: chloroplast thylakoid lumen	2.15E-07
7	GO:0009654: photosystem II oxygen evolving complex	2.73E-07
8	GO:0080085: signal recognition particle, chloroplast targeting	6.42E-06
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.76E-05
10	GO:0031977: thylakoid lumen	3.65E-05
11	GO:0019898: extrinsic component of membrane	4.73E-05
12	GO:0042651: thylakoid membrane	2.06E-04
13	GO:0005787: signal peptidase complex	3.78E-04
14	GO:0009344: nitrite reductase complex [NAD(P)H]	3.78E-04
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.22E-04
16	GO:0009941: chloroplast envelope	5.61E-04
17	GO:0008290: F-actin capping protein complex	8.22E-04
18	GO:0010007: magnesium chelatase complex	1.33E-03
19	GO:0030095: chloroplast photosystem II	1.44E-03
20	GO:0031969: chloroplast membrane	1.61E-03
21	GO:0009534: chloroplast thylakoid	3.72E-03
22	GO:0046658: anchored component of plasma membrane	3.78E-03
23	GO:0009523: photosystem II	4.57E-03
24	GO:0031225: anchored component of membrane	6.15E-03
25	GO:0030529: intracellular ribonucleoprotein complex	7.09E-03
26	GO:0009539: photosystem II reaction center	7.75E-03
27	GO:0042644: chloroplast nucleoid	8.79E-03
28	GO:0045298: tubulin complex	8.79E-03
29	GO:0005680: anaphase-promoting complex	8.79E-03
30	GO:0016604: nuclear body	9.89E-03
31	GO:0000311: plastid large ribosomal subunit	1.34E-02
32	GO:0032040: small-subunit processome	1.34E-02
33	GO:0030176: integral component of endoplasmic reticulum membrane	1.74E-02
34	GO:0048046: apoplast	2.28E-02
35	GO:0009522: photosystem I	3.48E-02
36	GO:0009505: plant-type cell wall	4.23E-02
37	GO:0010319: stromule	4.59E-02