co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G15860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900424: regulation of defense response to bacterium	2.30E-05
2	GO:0035266: meristem growth	2.30E-05
3	GO:0007292: female gamete generation	2.30E-05
4	GO:0050688: regulation of defense response to virus	5.89E-05
5	GO:0009156: ribonucleoside monophosphate biosynthetic process	5.89E-05
6	GO:0035335: peptidyl-tyrosine dephosphorylation	5.89E-05
7	GO:0051788: response to misfolded protein	5.89E-05
8	GO:0060968: regulation of gene silencing	1.04E-04
9	GO:0006511: ubiquitin-dependent protein catabolic process	1.25E-04
10	GO:0030163: protein catabolic process	1.31E-04
11	GO:0048577: negative regulation of short-day photoperiodism, flowering	1.55E-04
12	GO:0051782: negative regulation of cell division	1.55E-04
13	GO:0071786: endoplasmic reticulum tubular network organization	1.55E-04
14	GO:0009165: nucleotide biosynthetic process	2.12E-04
15	GO:0033320: UDP-D-xylose biosynthetic process	2.12E-04
16	GO:0033356: UDP-L-arabinose metabolic process	2.12E-04
17	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.37E-04
18	GO:0048827: phyllome development	3.37E-04
19	GO:0048232: male gamete generation	3.37E-04
20	GO:0043248: proteasome assembly	3.37E-04
21	GO:0042732: D-xylose metabolic process	3.37E-04
22	GO:0042176: regulation of protein catabolic process	3.37E-04
23	GO:0009612: response to mechanical stimulus	4.04E-04
24	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.04E-04
25	GO:0006401: RNA catabolic process	4.74E-04
26	GO:0006744: ubiquinone biosynthetic process	4.74E-04
27	GO:0010078: maintenance of root meristem identity	5.46E-04
28	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.98E-04
29	GO:0000902: cell morphogenesis	6.98E-04
30	GO:0043067: regulation of programmed cell death	7.77E-04
31	GO:0048829: root cap development	8.59E-04
32	GO:0072593: reactive oxygen species metabolic process	9.42E-04
33	GO:0010015: root morphogenesis	9.42E-04
34	GO:0006913: nucleocytoplasmic transport	9.42E-04
35	GO:0009790: embryo development	9.96E-04
36	GO:0009933: meristem structural organization	1.20E-03
37	GO:0090351: seedling development	1.30E-03
38	GO:0009225: nucleotide-sugar metabolic process	1.30E-03
39	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.30E-03
40	GO:0042023: DNA endoreduplication	1.39E-03
41	GO:0034976: response to endoplasmic reticulum stress	1.39E-03
42	GO:0009116: nucleoside metabolic process	1.49E-03
43	GO:0000027: ribosomal large subunit assembly	1.49E-03
44	GO:0008299: isoprenoid biosynthetic process	1.59E-03
45	GO:0030433: ubiquitin-dependent ERAD pathway	1.80E-03
46	GO:0000302: response to reactive oxygen species	2.72E-03
47	GO:0019760: glucosinolate metabolic process	3.09E-03
48	GO:0030244: cellulose biosynthetic process	4.17E-03
49	GO:0009832: plant-type cell wall biogenesis	4.32E-03
50	GO:0010311: lateral root formation	4.32E-03
51	GO:0006499: N-terminal protein myristoylation	4.46E-03
52	GO:0010043: response to zinc ion	4.60E-03
53	GO:0009910: negative regulation of flower development	4.60E-03
54	GO:0045087: innate immune response	4.90E-03
55	GO:0034599: cellular response to oxidative stress	5.05E-03
56	GO:0009735: response to cytokinin	5.19E-03
57	GO:0009926: auxin polar transport	5.84E-03
58	GO:0009965: leaf morphogenesis	6.33E-03
59	GO:0000165: MAPK cascade	6.66E-03
60	GO:0006486: protein glycosylation	7.18E-03
61	GO:0009651: response to salt stress	8.03E-03
62	GO:0048367: shoot system development	8.24E-03
63	GO:0048316: seed development	8.24E-03
64	GO:0009553: embryo sac development	8.98E-03
65	GO:0042744: hydrogen peroxide catabolic process	1.18E-02
66	GO:0006470: protein dephosphorylation	1.48E-02
67	GO:0009617: response to bacterium	1.53E-02
68	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	1.74E-02
69	GO:0046686: response to cadmium ion	1.79E-02
70	GO:0007165: signal transduction	2.40E-02
71	GO:0045454: cell redox homeostasis	2.43E-02
72	GO:0009408: response to heat	2.83E-02
73	GO:0048364: root development	2.91E-02
74	GO:0009908: flower development	3.96E-02
75	GO:0009555: pollen development	4.25E-02
76	GO:0051301: cell division	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0004725: protein tyrosine phosphatase activity	3.57E-05
2	GO:0050347: trans-octaprenyltranstransferase activity	5.89E-05
3	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	5.89E-05
4	GO:0000030: mannosyltransferase activity	1.04E-04
5	GO:0004749: ribose phosphate diphosphokinase activity	1.55E-04
6	GO:0004659: prenyltransferase activity	2.12E-04
7	GO:0031593: polyubiquitin binding	3.37E-04
8	GO:0016688: L-ascorbate peroxidase activity	3.37E-04
9	GO:0036402: proteasome-activating ATPase activity	3.37E-04
10	GO:0048040: UDP-glucuronate decarboxylase activity	3.37E-04
11	GO:0004130: cytochrome-c peroxidase activity	3.37E-04
12	GO:0070403: NAD+ binding	4.04E-04
13	GO:0030234: enzyme regulator activity	8.59E-04
14	GO:0004161: dimethylallyltranstransferase activity	9.42E-04
15	GO:0017025: TBP-class protein binding	1.30E-03
16	GO:0004190: aspartic-type endopeptidase activity	1.30E-03
17	GO:0043130: ubiquitin binding	1.49E-03
18	GO:0004298: threonine-type endopeptidase activity	1.70E-03
19	GO:0003756: protein disulfide isomerase activity	2.02E-03
20	GO:0004518: nuclease activity	2.84E-03
21	GO:0004722: protein serine/threonine phosphatase activity	2.87E-03
22	GO:0004721: phosphoprotein phosphatase activity	3.89E-03
23	GO:0005096: GTPase activator activity	4.32E-03
24	GO:0016887: ATPase activity	4.95E-03
25	GO:0030246: carbohydrate binding	7.62E-03
26	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.18E-02
27	GO:0046983: protein dimerization activity	1.54E-02
28	GO:0000287: magnesium ion binding	1.81E-02
29	GO:0046982: protein heterodimerization activity	1.81E-02
30	GO:0004601: peroxidase activity	1.84E-02
31	GO:0008233: peptidase activity	2.11E-02
32	GO:0000166: nucleotide binding	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0000502: proteasome complex	4.46E-09
3	GO:0008541: proteasome regulatory particle, lid subcomplex	1.68E-05
4	GO:0005838: proteasome regulatory particle	1.04E-04
5	GO:0071782: endoplasmic reticulum tubular network	1.55E-04
6	GO:0031597: cytosolic proteasome complex	4.04E-04
7	GO:0031595: nuclear proteasome complex	4.74E-04
8	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	5.46E-04
9	GO:0000326: protein storage vacuole	6.21E-04
10	GO:0019773: proteasome core complex, alpha-subunit complex	6.21E-04
11	GO:0008540: proteasome regulatory particle, base subcomplex	7.77E-04
12	GO:0005783: endoplasmic reticulum	1.05E-03
13	GO:0005839: proteasome core complex	1.70E-03
14	GO:0031965: nuclear membrane	2.60E-03
15	GO:0005788: endoplasmic reticulum lumen	3.62E-03
16	GO:0005667: transcription factor complex	3.75E-03
17	GO:0005829: cytosol	4.93E-03
18	GO:0005819: spindle	5.21E-03
19	GO:0005635: nuclear envelope	7.52E-03
20	GO:0009543: chloroplast thylakoid lumen	1.07E-02
21	GO:0009524: phragmoplast	1.11E-02
22	GO:0016020: membrane	1.23E-02
23	GO:0005789: endoplasmic reticulum membrane	1.76E-02
24	GO:0005730: nucleolus	1.95E-02
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.96E-02
26	GO:0005737: cytoplasm	2.11E-02
27	GO:0005774: vacuolar membrane	3.99E-02
28	GO:0009579: thylakoid	4.83E-02