Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G14840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0019323: pentose catabolic process0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
5GO:0071000: response to magnetism0.00E+00
6GO:0009583: detection of light stimulus0.00E+00
7GO:0000372: Group I intron splicing0.00E+00
8GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:0007638: mechanosensory behavior0.00E+00
10GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
11GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
12GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0090042: tubulin deacetylation0.00E+00
14GO:0006399: tRNA metabolic process0.00E+00
15GO:0009733: response to auxin5.19E-07
16GO:0046620: regulation of organ growth2.10E-05
17GO:0009734: auxin-activated signaling pathway3.91E-05
18GO:1900865: chloroplast RNA modification5.39E-05
19GO:0040008: regulation of growth1.35E-04
20GO:0016123: xanthophyll biosynthetic process1.76E-04
21GO:0016554: cytidine to uridine editing2.51E-04
22GO:1902458: positive regulation of stomatal opening4.45E-04
23GO:0006419: alanyl-tRNA aminoacylation4.45E-04
24GO:0070509: calcium ion import4.45E-04
25GO:0044262: cellular carbohydrate metabolic process4.45E-04
26GO:0043266: regulation of potassium ion transport4.45E-04
27GO:0010063: positive regulation of trichoblast fate specification4.45E-04
28GO:0072387: flavin adenine dinucleotide metabolic process4.45E-04
29GO:2000021: regulation of ion homeostasis4.45E-04
30GO:0043609: regulation of carbon utilization4.45E-04
31GO:0016117: carotenoid biosynthetic process5.14E-04
32GO:0009926: auxin polar transport5.76E-04
33GO:0071482: cellular response to light stimulus6.60E-04
34GO:0032544: plastid translation6.60E-04
35GO:0000373: Group II intron splicing7.90E-04
36GO:0009793: embryo development ending in seed dormancy8.74E-04
37GO:0009638: phototropism9.32E-04
38GO:1903426: regulation of reactive oxygen species biosynthetic process9.61E-04
39GO:0006420: arginyl-tRNA aminoacylation9.61E-04
40GO:0010343: singlet oxygen-mediated programmed cell death9.61E-04
41GO:1901529: positive regulation of anion channel activity9.61E-04
42GO:0060359: response to ammonium ion9.61E-04
43GO:1900871: chloroplast mRNA modification9.61E-04
44GO:0010617: circadian regulation of calcium ion oscillation9.61E-04
45GO:0048255: mRNA stabilization9.61E-04
46GO:1901959: positive regulation of cutin biosynthetic process9.61E-04
47GO:0006432: phenylalanyl-tRNA aminoacylation9.61E-04
48GO:0099402: plant organ development9.61E-04
49GO:0006423: cysteinyl-tRNA aminoacylation9.61E-04
50GO:0001736: establishment of planar polarity9.61E-04
51GO:0080009: mRNA methylation9.61E-04
52GO:0009786: regulation of asymmetric cell division9.61E-04
53GO:0007166: cell surface receptor signaling pathway9.95E-04
54GO:0048829: root cap development1.08E-03
55GO:0009416: response to light stimulus1.25E-03
56GO:0007275: multicellular organism development1.45E-03
57GO:0030029: actin filament-based process1.57E-03
58GO:0045910: negative regulation of DNA recombination1.57E-03
59GO:1902448: positive regulation of shade avoidance1.57E-03
60GO:0006000: fructose metabolic process1.57E-03
61GO:0016045: detection of bacterium1.57E-03
62GO:0006696: ergosterol biosynthetic process1.57E-03
63GO:1901672: positive regulation of systemic acquired resistance1.57E-03
64GO:1904278: positive regulation of wax biosynthetic process1.57E-03
65GO:0043157: response to cation stress1.57E-03
66GO:0009785: blue light signaling pathway1.62E-03
67GO:0009658: chloroplast organization1.69E-03
68GO:0010207: photosystem II assembly1.83E-03
69GO:0070588: calcium ion transmembrane transport2.05E-03
70GO:0010071: root meristem specification2.27E-03
71GO:0051513: regulation of monopolar cell growth2.27E-03
72GO:0007231: osmosensory signaling pathway2.27E-03
73GO:0051639: actin filament network formation2.27E-03
74GO:0010239: chloroplast mRNA processing2.27E-03
75GO:0009052: pentose-phosphate shunt, non-oxidative branch2.27E-03
76GO:0019048: modulation by virus of host morphology or physiology2.27E-03
77GO:1901332: negative regulation of lateral root development2.27E-03
78GO:0031048: chromatin silencing by small RNA2.27E-03
79GO:2001141: regulation of RNA biosynthetic process2.27E-03
80GO:0051017: actin filament bundle assembly2.54E-03
81GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.63E-03
82GO:0051764: actin crosslink formation3.05E-03
83GO:0006661: phosphatidylinositol biosynthetic process3.05E-03
84GO:0009765: photosynthesis, light harvesting3.05E-03
85GO:0033500: carbohydrate homeostasis3.05E-03
86GO:0006021: inositol biosynthetic process3.05E-03
87GO:0045723: positive regulation of fatty acid biosynthetic process3.05E-03
88GO:1902347: response to strigolactone3.05E-03
89GO:0051567: histone H3-K9 methylation3.05E-03
90GO:0008295: spermidine biosynthetic process3.05E-03
91GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.68E-03
92GO:0009451: RNA modification3.71E-03
93GO:0010158: abaxial cell fate specification3.90E-03
94GO:0080110: sporopollenin biosynthetic process3.90E-03
95GO:0010117: photoprotection3.90E-03
96GO:0046283: anthocyanin-containing compound metabolic process3.90E-03
97GO:0010236: plastoquinone biosynthetic process3.90E-03
98GO:0045038: protein import into chloroplast thylakoid membrane3.90E-03
99GO:0016120: carotene biosynthetic process3.90E-03
100GO:0009959: negative gravitropism4.83E-03
101GO:0060918: auxin transport4.83E-03
102GO:1901371: regulation of leaf morphogenesis4.83E-03
103GO:0016458: gene silencing4.83E-03
104GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione4.83E-03
105GO:0009958: positive gravitropism5.06E-03
106GO:0010305: leaf vascular tissue pattern formation5.06E-03
107GO:0005975: carbohydrate metabolic process5.40E-03
108GO:0007018: microtubule-based movement5.44E-03
109GO:0010310: regulation of hydrogen peroxide metabolic process5.83E-03
110GO:0042372: phylloquinone biosynthetic process5.83E-03
111GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.83E-03
112GO:0048528: post-embryonic root development6.89E-03
113GO:0030497: fatty acid elongation6.89E-03
114GO:0010098: suspensor development6.89E-03
115GO:0010050: vegetative phase change6.89E-03
116GO:0048437: floral organ development6.89E-03
117GO:0006400: tRNA modification6.89E-03
118GO:0051510: regulation of unidimensional cell growth6.89E-03
119GO:0015693: magnesium ion transport6.89E-03
120GO:0009828: plant-type cell wall loosening7.59E-03
121GO:0009624: response to nematode7.83E-03
122GO:0048564: photosystem I assembly8.02E-03
123GO:0009850: auxin metabolic process8.02E-03
124GO:2000070: regulation of response to water deprivation8.02E-03
125GO:0051276: chromosome organization8.02E-03
126GO:0070413: trehalose metabolism in response to stress8.02E-03
127GO:0000105: histidine biosynthetic process8.02E-03
128GO:0051607: defense response to virus8.56E-03
129GO:0010027: thylakoid membrane organization9.07E-03
130GO:0006002: fructose 6-phosphate metabolic process9.21E-03
131GO:0015996: chlorophyll catabolic process9.21E-03
132GO:0007186: G-protein coupled receptor signaling pathway9.21E-03
133GO:0009657: plastid organization9.21E-03
134GO:0048507: meristem development1.05E-02
135GO:0000902: cell morphogenesis1.05E-02
136GO:0015995: chlorophyll biosynthetic process1.07E-02
137GO:0016311: dephosphorylation1.13E-02
138GO:1900426: positive regulation of defense response to bacterium1.18E-02
139GO:0006779: porphyrin-containing compound biosynthetic process1.18E-02
140GO:0042761: very long-chain fatty acid biosynthetic process1.18E-02
141GO:0009098: leucine biosynthetic process1.18E-02
142GO:0016571: histone methylation1.18E-02
143GO:0016573: histone acetylation1.18E-02
144GO:0018298: protein-chromophore linkage1.19E-02
145GO:0010311: lateral root formation1.25E-02
146GO:0009790: embryo development1.27E-02
147GO:0006298: mismatch repair1.31E-02
148GO:0006949: syncytium formation1.31E-02
149GO:0031627: telomeric loop formation1.31E-02
150GO:0009299: mRNA transcription1.31E-02
151GO:0006535: cysteine biosynthetic process from serine1.31E-02
152GO:0006782: protoporphyrinogen IX biosynthetic process1.31E-02
153GO:0030422: production of siRNA involved in RNA interference1.31E-02
154GO:0009910: negative regulation of flower development1.38E-02
155GO:0006865: amino acid transport1.44E-02
156GO:0006816: calcium ion transport1.46E-02
157GO:0006352: DNA-templated transcription, initiation1.46E-02
158GO:0006415: translational termination1.46E-02
159GO:0048765: root hair cell differentiation1.46E-02
160GO:0009637: response to blue light1.51E-02
161GO:0045490: pectin catabolic process1.57E-02
162GO:0006790: sulfur compound metabolic process1.60E-02
163GO:0045037: protein import into chloroplast stroma1.60E-02
164GO:0010582: floral meristem determinacy1.60E-02
165GO:0009718: anthocyanin-containing compound biosynthetic process1.75E-02
166GO:0010075: regulation of meristem growth1.75E-02
167GO:0009725: response to hormone1.75E-02
168GO:0009266: response to temperature stimulus1.91E-02
169GO:0010020: chloroplast fission1.91E-02
170GO:0009887: animal organ morphogenesis1.91E-02
171GO:0009640: photomorphogenesis1.95E-02
172GO:0010114: response to red light1.95E-02
173GO:0010030: positive regulation of seed germination2.07E-02
174GO:0046854: phosphatidylinositol phosphorylation2.07E-02
175GO:0006833: water transport2.24E-02
176GO:0010025: wax biosynthetic process2.24E-02
177GO:0019344: cysteine biosynthetic process2.41E-02
178GO:0006289: nucleotide-excision repair2.41E-02
179GO:0006338: chromatin remodeling2.41E-02
180GO:2000377: regulation of reactive oxygen species metabolic process2.41E-02
181GO:0005992: trehalose biosynthetic process2.41E-02
182GO:0009664: plant-type cell wall organization2.45E-02
183GO:0016575: histone deacetylation2.59E-02
184GO:0006418: tRNA aminoacylation for protein translation2.59E-02
185GO:0009826: unidimensional cell growth2.60E-02
186GO:0006468: protein phosphorylation2.71E-02
187GO:0006306: DNA methylation2.77E-02
188GO:0003333: amino acid transmembrane transport2.77E-02
189GO:0010082: regulation of root meristem growth3.14E-02
190GO:0071215: cellular response to abscisic acid stimulus3.14E-02
191GO:0048316: seed development3.21E-02
192GO:0010584: pollen exine formation3.33E-02
193GO:0042127: regulation of cell proliferation3.33E-02
194GO:0006284: base-excision repair3.33E-02
195GO:0070417: cellular response to cold3.53E-02
196GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.53E-02
197GO:0010118: stomatal movement3.73E-02
198GO:0042631: cellular response to water deprivation3.73E-02
199GO:0034220: ion transmembrane transport3.73E-02
200GO:0006342: chromatin silencing3.94E-02
201GO:0010182: sugar mediated signaling pathway3.94E-02
202GO:0009742: brassinosteroid mediated signaling pathway3.96E-02
203GO:0042752: regulation of circadian rhythm4.14E-02
204GO:0009646: response to absence of light4.14E-02
205GO:0008654: phospholipid biosynthetic process4.36E-02
206GO:0009630: gravitropism4.79E-02
207GO:0010583: response to cyclopentenone4.79E-02
208GO:0016032: viral process4.79E-02
RankGO TermAdjusted P value
1GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
5GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
6GO:0043014: alpha-tubulin binding0.00E+00
7GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
8GO:0051721: protein phosphatase 2A binding0.00E+00
9GO:0042903: tubulin deacetylase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
12GO:0004401: histidinol-phosphatase activity0.00E+00
13GO:0046905: phytoene synthase activity0.00E+00
14GO:0001872: (1->3)-beta-D-glucan binding6.54E-05
15GO:0003723: RNA binding2.67E-04
16GO:0030570: pectate lyase activity4.15E-04
17GO:0004519: endonuclease activity4.21E-04
18GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.45E-04
19GO:0005227: calcium activated cation channel activity4.45E-04
20GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity4.45E-04
21GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.45E-04
22GO:0004813: alanine-tRNA ligase activity4.45E-04
23GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.45E-04
24GO:0051996: squalene synthase activity4.45E-04
25GO:0010347: L-galactose-1-phosphate phosphatase activity4.45E-04
26GO:0004675: transmembrane receptor protein serine/threonine kinase activity6.95E-04
27GO:0043425: bHLH transcription factor binding9.61E-04
28GO:0004814: arginine-tRNA ligase activity9.61E-04
29GO:0004766: spermidine synthase activity9.61E-04
30GO:0052832: inositol monophosphate 3-phosphatase activity9.61E-04
31GO:0004817: cysteine-tRNA ligase activity9.61E-04
32GO:0004750: ribulose-phosphate 3-epimerase activity9.61E-04
33GO:0008805: carbon-monoxide oxygenase activity9.61E-04
34GO:0008934: inositol monophosphate 1-phosphatase activity9.61E-04
35GO:0052833: inositol monophosphate 4-phosphatase activity9.61E-04
36GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.61E-04
37GO:0004826: phenylalanine-tRNA ligase activity9.61E-04
38GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity9.61E-04
39GO:0050736: O-malonyltransferase activity9.61E-04
40GO:0050017: L-3-cyanoalanine synthase activity9.61E-04
41GO:0017118: lipoyltransferase activity9.61E-04
42GO:0003852: 2-isopropylmalate synthase activity9.61E-04
43GO:0005524: ATP binding1.29E-03
44GO:0000049: tRNA binding1.43E-03
45GO:0004180: carboxypeptidase activity1.57E-03
46GO:0003913: DNA photolyase activity1.57E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity1.57E-03
48GO:0016805: dipeptidase activity1.57E-03
49GO:0005262: calcium channel activity1.62E-03
50GO:0004222: metalloendopeptidase activity2.06E-03
51GO:0048487: beta-tubulin binding2.27E-03
52GO:0016149: translation release factor activity, codon specific2.27E-03
53GO:0035197: siRNA binding2.27E-03
54GO:0009882: blue light photoreceptor activity2.27E-03
55GO:0016829: lyase activity2.47E-03
56GO:0001053: plastid sigma factor activity3.05E-03
57GO:0010011: auxin binding3.05E-03
58GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.05E-03
59GO:0016987: sigma factor activity3.05E-03
60GO:0070628: proteasome binding3.05E-03
61GO:0010328: auxin influx transmembrane transporter activity3.05E-03
62GO:0019199: transmembrane receptor protein kinase activity3.05E-03
63GO:0004176: ATP-dependent peptidase activity3.08E-03
64GO:0008725: DNA-3-methyladenine glycosylase activity3.90E-03
65GO:0005471: ATP:ADP antiporter activity3.90E-03
66GO:2001070: starch binding4.83E-03
67GO:0030983: mismatched DNA binding4.83E-03
68GO:0043140: ATP-dependent 3'-5' DNA helicase activity4.83E-03
69GO:0031593: polyubiquitin binding4.83E-03
70GO:0016208: AMP binding4.83E-03
71GO:0004462: lactoylglutathione lyase activity4.83E-03
72GO:0009378: four-way junction helicase activity4.83E-03
73GO:0003777: microtubule motor activity5.68E-03
74GO:0004124: cysteine synthase activity5.83E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.83E-03
76GO:0043138: 3'-5' DNA helicase activity5.83E-03
77GO:0004656: procollagen-proline 4-dioxygenase activity5.83E-03
78GO:0009881: photoreceptor activity6.89E-03
79GO:0051015: actin filament binding7.13E-03
80GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.19E-03
81GO:0003684: damaged DNA binding7.59E-03
82GO:0008237: metallopeptidase activity8.07E-03
83GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.21E-03
84GO:0071949: FAD binding1.05E-02
85GO:0003747: translation release factor activity1.05E-02
86GO:0030247: polysaccharide binding1.07E-02
87GO:0004805: trehalose-phosphatase activity1.31E-02
88GO:0003691: double-stranded telomeric DNA binding1.46E-02
89GO:0003697: single-stranded DNA binding1.51E-02
90GO:0003993: acid phosphatase activity1.58E-02
91GO:0004521: endoribonuclease activity1.60E-02
92GO:0000976: transcription regulatory region sequence-specific DNA binding1.60E-02
93GO:0009982: pseudouridine synthase activity1.75E-02
94GO:0003725: double-stranded RNA binding1.75E-02
95GO:0004565: beta-galactosidase activity1.75E-02
96GO:0015095: magnesium ion transmembrane transporter activity1.75E-02
97GO:0031072: heat shock protein binding1.75E-02
98GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.91E-02
99GO:0008061: chitin binding2.07E-02
100GO:0008146: sulfotransferase activity2.07E-02
101GO:0043621: protein self-association2.11E-02
102GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.24E-02
103GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.24E-02
104GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.24E-02
105GO:0031418: L-ascorbic acid binding2.41E-02
106GO:0004407: histone deacetylase activity2.41E-02
107GO:0043130: ubiquitin binding2.41E-02
108GO:0005528: FK506 binding2.41E-02
109GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.63E-02
110GO:0015171: amino acid transmembrane transporter activity2.91E-02
111GO:0003756: protein disulfide isomerase activity3.33E-02
112GO:0016887: ATPase activity3.33E-02
113GO:0003727: single-stranded RNA binding3.33E-02
114GO:0004650: polygalacturonase activity3.42E-02
115GO:0004812: aminoacyl-tRNA ligase activity3.53E-02
116GO:0008536: Ran GTPase binding3.94E-02
117GO:0008080: N-acetyltransferase activity3.94E-02
118GO:0008026: ATP-dependent helicase activity3.96E-02
119GO:0050662: coenzyme binding4.14E-02
120GO:0010181: FMN binding4.14E-02
121GO:0019901: protein kinase binding4.36E-02
122GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.79E-02
123GO:0046872: metal ion binding4.86E-02
RankGO TermAdjusted P value
1GO:0009537: proplastid0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0009507: chloroplast1.70E-09
4GO:0031969: chloroplast membrane1.31E-04
5GO:0005886: plasma membrane1.94E-04
6GO:0009986: cell surface4.34E-04
7GO:0009941: chloroplast envelope5.36E-04
8GO:0009501: amyloplast5.41E-04
9GO:0009513: etioplast9.61E-04
10GO:0031357: integral component of chloroplast inner membrane9.61E-04
11GO:0009528: plastid inner membrane1.57E-03
12GO:0009509: chromoplast1.57E-03
13GO:0030139: endocytic vesicle1.57E-03
14GO:0016605: PML body1.57E-03
15GO:0009508: plastid chromosome1.62E-03
16GO:0032585: multivesicular body membrane2.27E-03
17GO:0032432: actin filament bundle2.27E-03
18GO:0005719: nuclear euchromatin2.27E-03
19GO:0030663: COPI-coated vesicle membrane3.05E-03
20GO:0009527: plastid outer membrane3.05E-03
21GO:0009532: plastid stroma3.08E-03
22GO:0005871: kinesin complex4.34E-03
23GO:0010319: stromule8.07E-03
24GO:0009295: nucleoid8.07E-03
25GO:0009570: chloroplast stroma8.22E-03
26GO:0009536: plastid9.07E-03
27GO:0030529: intracellular ribonucleoprotein complex9.07E-03
28GO:0000783: nuclear telomere cap complex9.21E-03
29GO:0031225: anchored component of membrane9.95E-03
30GO:0015030: Cajal body1.18E-02
31GO:0016604: nuclear body1.18E-02
32GO:0030125: clathrin vesicle coat1.31E-02
33GO:0000418: DNA-directed RNA polymerase IV complex1.31E-02
34GO:0005759: mitochondrial matrix1.40E-02
35GO:0005884: actin filament1.46E-02
36GO:0005578: proteinaceous extracellular matrix1.75E-02
37GO:0030095: chloroplast photosystem II1.91E-02
38GO:0005856: cytoskeleton2.19E-02
39GO:0046658: anchored component of plasma membrane2.25E-02
40GO:0009654: photosystem II oxygen evolving complex2.59E-02
41GO:0015629: actin cytoskeleton3.14E-02
42GO:0019898: extrinsic component of membrane4.36E-02
43GO:0031965: nuclear membrane4.36E-02
44GO:0009543: chloroplast thylakoid lumen4.67E-02
45GO:0005694: chromosome4.79E-02
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Gene type



Gene DE type