co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G13700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0008298: intracellular mRNA localization	0.00E+00
4	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
5	GO:0006399: tRNA metabolic process	0.00E+00
6	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
7	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
8	GO:0030155: regulation of cell adhesion	0.00E+00
9	GO:0045038: protein import into chloroplast thylakoid membrane	2.47E-07
10	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.52E-06
11	GO:2001141: regulation of RNA biosynthetic process	1.30E-05
12	GO:0010239: chloroplast mRNA processing	1.30E-05
13	GO:0006400: tRNA modification	1.07E-04
14	GO:0071482: cellular response to light stimulus	1.72E-04
15	GO:0051775: response to redox state	1.77E-04
16	GO:0031426: polycistronic mRNA processing	1.77E-04
17	GO:0043266: regulation of potassium ion transport	1.77E-04
18	GO:0010080: regulation of floral meristem growth	1.77E-04
19	GO:2000021: regulation of ion homeostasis	1.77E-04
20	GO:0070574: cadmium ion transmembrane transport	1.77E-04
21	GO:0051247: positive regulation of protein metabolic process	1.77E-04
22	GO:1902458: positive regulation of stomatal opening	1.77E-04
23	GO:2000905: negative regulation of starch metabolic process	1.77E-04
24	GO:0006419: alanyl-tRNA aminoacylation	1.77E-04
25	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.77E-04
26	GO:0010027: thylakoid membrane organization	2.36E-04
27	GO:0043085: positive regulation of catalytic activity	3.42E-04
28	GO:0006352: DNA-templated transcription, initiation	3.42E-04
29	GO:1901959: positive regulation of cutin biosynthetic process	4.01E-04
30	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.01E-04
31	GO:0060359: response to ammonium ion	4.01E-04
32	GO:0010207: photosystem II assembly	5.04E-04
33	GO:0048586: regulation of long-day photoperiodism, flowering	6.55E-04
34	GO:1904278: positive regulation of wax biosynthetic process	6.55E-04
35	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	6.55E-04
36	GO:0010623: programmed cell death involved in cell development	6.55E-04
37	GO:0080055: low-affinity nitrate transport	6.55E-04
38	GO:0006696: ergosterol biosynthetic process	6.55E-04
39	GO:0043157: response to cation stress	6.55E-04
40	GO:0005977: glycogen metabolic process	6.55E-04
41	GO:0048281: inflorescence morphogenesis	6.55E-04
42	GO:0010022: meristem determinacy	6.55E-04
43	GO:0007017: microtubule-based process	7.64E-04
44	GO:0009226: nucleotide-sugar biosynthetic process	9.34E-04
45	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	9.34E-04
46	GO:0090308: regulation of methylation-dependent chromatin silencing	9.34E-04
47	GO:0006107: oxaloacetate metabolic process	9.34E-04
48	GO:0010148: transpiration	9.34E-04
49	GO:0019722: calcium-mediated signaling	1.07E-03
50	GO:2000122: negative regulation of stomatal complex development	1.24E-03
51	GO:0006546: glycine catabolic process	1.24E-03
52	GO:0006734: NADH metabolic process	1.24E-03
53	GO:0010021: amylopectin biosynthetic process	1.24E-03
54	GO:0006661: phosphatidylinositol biosynthetic process	1.24E-03
55	GO:0009765: photosynthesis, light harvesting	1.24E-03
56	GO:2000306: positive regulation of photomorphogenesis	1.24E-03
57	GO:0006109: regulation of carbohydrate metabolic process	1.24E-03
58	GO:0045723: positive regulation of fatty acid biosynthetic process	1.24E-03
59	GO:0010508: positive regulation of autophagy	1.24E-03
60	GO:0015979: photosynthesis	1.52E-03
61	GO:0080110: sporopollenin biosynthetic process	1.57E-03
62	GO:0043097: pyrimidine nucleoside salvage	1.57E-03
63	GO:0009107: lipoate biosynthetic process	1.57E-03
64	GO:0010375: stomatal complex patterning	1.57E-03
65	GO:0032502: developmental process	1.76E-03
66	GO:0000741: karyogamy	1.94E-03
67	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.94E-03
68	GO:0009959: negative gravitropism	1.94E-03
69	GO:0006206: pyrimidine nucleobase metabolic process	1.94E-03
70	GO:0032973: amino acid export	1.94E-03
71	GO:0007267: cell-cell signaling	2.12E-03
72	GO:0010019: chloroplast-nucleus signaling pathway	2.32E-03
73	GO:0070370: cellular heat acclimation	2.74E-03
74	GO:0010103: stomatal complex morphogenesis	2.74E-03
75	GO:0010374: stomatal complex development	2.74E-03
76	GO:0043090: amino acid import	2.74E-03
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.74E-03
78	GO:0015995: chlorophyll biosynthetic process	2.80E-03
79	GO:0018298: protein-chromophore linkage	3.09E-03
80	GO:0042255: ribosome assembly	3.17E-03
81	GO:0006353: DNA-templated transcription, termination	3.17E-03
82	GO:0006875: cellular metal ion homeostasis	3.17E-03
83	GO:0009690: cytokinin metabolic process	3.17E-03
84	GO:0006605: protein targeting	3.17E-03
85	GO:2000070: regulation of response to water deprivation	3.17E-03
86	GO:0000105: histidine biosynthetic process	3.17E-03
87	GO:0007155: cell adhesion	3.17E-03
88	GO:0048564: photosystem I assembly	3.17E-03
89	GO:0001558: regulation of cell growth	3.63E-03
90	GO:0010052: guard cell differentiation	3.63E-03
91	GO:0032544: plastid translation	3.63E-03
92	GO:0017004: cytochrome complex assembly	3.63E-03
93	GO:0015996: chlorophyll catabolic process	3.63E-03
94	GO:0007186: G-protein coupled receptor signaling pathway	3.63E-03
95	GO:0009657: plastid organization	3.63E-03
96	GO:0010206: photosystem II repair	4.10E-03
97	GO:0080144: amino acid homeostasis	4.10E-03
98	GO:0006754: ATP biosynthetic process	4.10E-03
99	GO:0048507: meristem development	4.10E-03
100	GO:0009638: phototropism	4.60E-03
101	GO:0009658: chloroplast organization	4.93E-03
102	GO:0009299: mRNA transcription	5.11E-03
103	GO:0019684: photosynthesis, light reaction	5.65E-03
104	GO:0006415: translational termination	5.65E-03
105	GO:0009089: lysine biosynthetic process via diaminopimelate	5.65E-03
106	GO:0018119: peptidyl-cysteine S-nitrosylation	5.65E-03
107	GO:0010216: maintenance of DNA methylation	5.65E-03
108	GO:0045037: protein import into chloroplast stroma	6.20E-03
109	GO:0010582: floral meristem determinacy	6.20E-03
110	GO:0006108: malate metabolic process	6.78E-03
111	GO:0009718: anthocyanin-containing compound biosynthetic process	6.78E-03
112	GO:0009725: response to hormone	6.78E-03
113	GO:0051603: proteolysis involved in cellular protein catabolic process	7.02E-03
114	GO:0019253: reductive pentose-phosphate cycle	7.37E-03
115	GO:0009887: animal organ morphogenesis	7.37E-03
116	GO:0010030: positive regulation of seed germination	7.98E-03
117	GO:0005975: carbohydrate metabolic process	8.94E-03
118	GO:0009740: gibberellic acid mediated signaling pathway	9.09E-03
119	GO:0009944: polarity specification of adaxial/abaxial axis	9.26E-03
120	GO:0051302: regulation of cell division	9.92E-03
121	GO:0010431: seed maturation	1.06E-02
122	GO:0006730: one-carbon metabolic process	1.13E-02
123	GO:0001944: vasculature development	1.20E-02
124	GO:0009306: protein secretion	1.27E-02
125	GO:0010089: xylem development	1.27E-02
126	GO:0010584: pollen exine formation	1.27E-02
127	GO:0016117: carotenoid biosynthetic process	1.35E-02
128	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.35E-02
129	GO:0008033: tRNA processing	1.43E-02
130	GO:0042631: cellular response to water deprivation	1.43E-02
131	GO:0006662: glycerol ether metabolic process	1.50E-02
132	GO:0010197: polar nucleus fusion	1.50E-02
133	GO:0010182: sugar mediated signaling pathway	1.50E-02
134	GO:0045489: pectin biosynthetic process	1.50E-02
135	GO:0019252: starch biosynthetic process	1.66E-02
136	GO:0008654: phospholipid biosynthetic process	1.66E-02
137	GO:0055072: iron ion homeostasis	1.66E-02
138	GO:0009791: post-embryonic development	1.66E-02
139	GO:0045490: pectin catabolic process	1.68E-02
140	GO:0009451: RNA modification	1.71E-02
141	GO:0010583: response to cyclopentenone	1.83E-02
142	GO:0009630: gravitropism	1.83E-02
143	GO:0008380: RNA splicing	2.00E-02
144	GO:0010468: regulation of gene expression	2.00E-02
145	GO:0009416: response to light stimulus	2.20E-02
146	GO:0010029: regulation of seed germination	2.36E-02
147	GO:0009627: systemic acquired resistance	2.45E-02
148	GO:0009407: toxin catabolic process	2.94E-02
149	GO:0055085: transmembrane transport	2.97E-02
150	GO:0009637: response to blue light	3.24E-02
151	GO:0034599: cellular response to oxidative stress	3.35E-02
152	GO:0006099: tricarboxylic acid cycle	3.35E-02
153	GO:0030001: metal ion transport	3.56E-02
154	GO:0006839: mitochondrial transport	3.56E-02
155	GO:0010114: response to red light	3.88E-02
156	GO:0042546: cell wall biogenesis	4.00E-02
157	GO:0009644: response to high light intensity	4.11E-02
158	GO:0007275: multicellular organism development	4.22E-02
159	GO:0009636: response to toxic substance	4.22E-02
160	GO:0009965: leaf morphogenesis	4.22E-02
161	GO:0009664: plant-type cell wall organization	4.56E-02
162	GO:0042538: hyperosmotic salinity response	4.56E-02
163	GO:0006629: lipid metabolic process	4.73E-02
164	GO:0009585: red, far-red light phototransduction	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0008974: phosphoribulokinase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
6	GO:0019899: enzyme binding	1.39E-06
7	GO:0043495: protein anchor	2.40E-05
8	GO:0001053: plastid sigma factor activity	2.40E-05
9	GO:0016987: sigma factor activity	2.40E-05
10	GO:0051996: squalene synthase activity	1.77E-04
11	GO:0008746: NAD(P)+ transhydrogenase activity	1.77E-04
12	GO:0003879: ATP phosphoribosyltransferase activity	1.77E-04
13	GO:0046906: tetrapyrrole binding	1.77E-04
14	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.77E-04
15	GO:0004813: alanine-tRNA ligase activity	1.77E-04
16	GO:0048531: beta-1,3-galactosyltransferase activity	4.01E-04
17	GO:0019156: isoamylase activity	4.01E-04
18	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.01E-04
19	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.01E-04
20	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	4.01E-04
21	GO:0043425: bHLH transcription factor binding	4.01E-04
22	GO:0004047: aminomethyltransferase activity	4.01E-04
23	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.04E-04
24	GO:0080054: low-affinity nitrate transmembrane transporter activity	6.55E-04
25	GO:0016992: lipoate synthase activity	6.55E-04
26	GO:0015086: cadmium ion transmembrane transporter activity	9.34E-04
27	GO:0016149: translation release factor activity, codon specific	9.34E-04
28	GO:0048027: mRNA 5'-UTR binding	9.34E-04
29	GO:0030570: pectate lyase activity	9.92E-04
30	GO:0022891: substrate-specific transmembrane transporter activity	9.92E-04
31	GO:0042277: peptide binding	1.24E-03
32	GO:0019199: transmembrane receptor protein kinase activity	1.24E-03
33	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.57E-03
34	GO:0004556: alpha-amylase activity	1.94E-03
35	GO:0004462: lactoylglutathione lyase activity	1.94E-03
36	GO:0016615: malate dehydrogenase activity	1.94E-03
37	GO:0008200: ion channel inhibitor activity	1.94E-03
38	GO:0005200: structural constituent of cytoskeleton	2.12E-03
39	GO:0003924: GTPase activity	2.25E-03
40	GO:0030060: L-malate dehydrogenase activity	2.32E-03
41	GO:0004849: uridine kinase activity	2.32E-03
42	GO:0016168: chlorophyll binding	2.51E-03
43	GO:0015103: inorganic anion transmembrane transporter activity	2.74E-03
44	GO:0008312: 7S RNA binding	3.17E-03
45	GO:0042802: identical protein binding	3.84E-03
46	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.10E-03
47	GO:0003747: translation release factor activity	4.10E-03
48	GO:0030955: potassium ion binding	4.60E-03
49	GO:0004743: pyruvate kinase activity	4.60E-03
50	GO:0004185: serine-type carboxypeptidase activity	5.03E-03
51	GO:0008047: enzyme activator activity	5.11E-03
52	GO:0000976: transcription regulatory region sequence-specific DNA binding	6.20E-03
53	GO:0000049: tRNA binding	6.20E-03
54	GO:0008081: phosphoric diester hydrolase activity	6.78E-03
55	GO:0031072: heat shock protein binding	6.78E-03
56	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.78E-03
57	GO:0004871: signal transducer activity	8.65E-03
58	GO:0004857: enzyme inhibitor activity	9.26E-03
59	GO:0005528: FK506 binding	9.26E-03
60	GO:0005525: GTP binding	1.14E-02
61	GO:0003727: single-stranded RNA binding	1.27E-02
62	GO:0016829: lyase activity	1.31E-02
63	GO:0047134: protein-disulfide reductase activity	1.35E-02
64	GO:0046873: metal ion transmembrane transporter activity	1.50E-02
65	GO:0008080: N-acetyltransferase activity	1.50E-02
66	GO:0050662: coenzyme binding	1.58E-02
67	GO:0004791: thioredoxin-disulfide reductase activity	1.58E-02
68	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.91E-02
69	GO:0008483: transaminase activity	2.09E-02
70	GO:0016597: amino acid binding	2.18E-02
71	GO:0000287: magnesium ion binding	2.55E-02
72	GO:0008236: serine-type peptidase activity	2.64E-02
73	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.74E-02
74	GO:0004222: metalloendopeptidase activity	2.94E-02
75	GO:0003993: acid phosphatase activity	3.35E-02
76	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.45E-02
77	GO:0004364: glutathione transferase activity	3.78E-02
78	GO:0035091: phosphatidylinositol binding	4.11E-02
79	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.33E-02
80	GO:0003690: double-stranded DNA binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	2.41E-15
3	GO:0009570: chloroplast stroma	1.28E-07
4	GO:0080085: signal recognition particle, chloroplast targeting	1.52E-06
5	GO:0009535: chloroplast thylakoid membrane	4.61E-06
6	GO:0042651: thylakoid membrane	4.11E-05
7	GO:0009941: chloroplast envelope	1.00E-04
8	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.72E-04
9	GO:0010319: stromule	2.01E-04
10	GO:0009579: thylakoid	4.02E-04
11	GO:0009528: plastid inner membrane	6.55E-04
12	GO:0046658: anchored component of plasma membrane	7.14E-04
13	GO:0015630: microtubule cytoskeleton	9.34E-04
14	GO:0009527: plastid outer membrane	1.24E-03
15	GO:0009523: photosystem II	1.55E-03
16	GO:0048046: apoplast	1.68E-03
17	GO:0009543: chloroplast thylakoid lumen	1.89E-03
18	GO:0031225: anchored component of membrane	2.74E-03
19	GO:0045298: tubulin complex	4.10E-03
20	GO:0005720: nuclear heterochromatin	4.10E-03
21	GO:0042644: chloroplast nucleoid	4.10E-03
22	GO:0031977: thylakoid lumen	4.64E-03
23	GO:0009505: plant-type cell wall	6.41E-03
24	GO:0031969: chloroplast membrane	6.49E-03
25	GO:0009654: photosystem II oxygen evolving complex	9.92E-03
26	GO:0009532: plastid stroma	1.06E-02
27	GO:0019898: extrinsic component of membrane	1.66E-02
28	GO:0009707: chloroplast outer membrane	2.74E-02
29	GO:0005773: vacuole	2.95E-02
30	GO:0005874: microtubule	3.11E-02
31	GO:0005618: cell wall	4.52E-02