co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0090391: granum assembly	9.39E-10
5	GO:0009773: photosynthetic electron transport in photosystem I	1.00E-08
6	GO:0006636: unsaturated fatty acid biosynthetic process	4.46E-06
7	GO:0010196: nonphotochemical quenching	2.90E-05
8	GO:0008610: lipid biosynthetic process	3.81E-05
9	GO:0006633: fatty acid biosynthetic process	5.66E-05
10	GO:0071277: cellular response to calcium ion	7.75E-05
11	GO:0046467: membrane lipid biosynthetic process	7.75E-05
12	GO:0015671: oxygen transport	7.75E-05
13	GO:0080093: regulation of photorespiration	7.75E-05
14	GO:0031998: regulation of fatty acid beta-oxidation	7.75E-05
15	GO:0006631: fatty acid metabolic process	1.25E-04
16	GO:0006094: gluconeogenesis	1.40E-04
17	GO:0010207: photosystem II assembly	1.60E-04
18	GO:0010143: cutin biosynthetic process	1.60E-04
19	GO:0010025: wax biosynthetic process	2.04E-04
20	GO:0080167: response to karrikin	2.13E-04
21	GO:0015979: photosynthesis	2.65E-04
22	GO:0006081: cellular aldehyde metabolic process	3.11E-04
23	GO:0006869: lipid transport	3.32E-04
24	GO:0042631: cellular response to water deprivation	4.24E-04
25	GO:0006021: inositol biosynthetic process	5.98E-04
26	GO:0045727: positive regulation of translation	5.98E-04
27	GO:0015994: chlorophyll metabolic process	5.98E-04
28	GO:0006097: glyoxylate cycle	7.57E-04
29	GO:0051607: defense response to virus	7.57E-04
30	GO:0010027: thylakoid membrane organization	8.00E-04
31	GO:0010190: cytochrome b6f complex assembly	9.24E-04
32	GO:0042549: photosystem II stabilization	9.24E-04
33	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	9.24E-04
34	GO:0015995: chlorophyll biosynthetic process	9.33E-04
35	GO:0055114: oxidation-reduction process	9.39E-04
36	GO:0010189: vitamin E biosynthetic process	1.10E-03
37	GO:0009854: oxidative photosynthetic carbon pathway	1.10E-03
38	GO:0005975: carbohydrate metabolic process	1.20E-03
39	GO:1900057: positive regulation of leaf senescence	1.29E-03
40	GO:0034599: cellular response to oxidative stress	1.35E-03
41	GO:0009704: de-etiolation	1.48E-03
42	GO:0019827: stem cell population maintenance	1.48E-03
43	GO:0009642: response to light intensity	1.48E-03
44	GO:0032544: plastid translation	1.69E-03
45	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.69E-03
46	GO:0071482: cellular response to light stimulus	1.69E-03
47	GO:0019432: triglyceride biosynthetic process	1.91E-03
48	GO:0010206: photosystem II repair	1.91E-03
49	GO:0090333: regulation of stomatal closure	1.91E-03
50	GO:0006783: heme biosynthetic process	1.91E-03
51	GO:0006098: pentose-phosphate shunt	1.91E-03
52	GO:0006779: porphyrin-containing compound biosynthetic process	2.14E-03
53	GO:0006782: protoporphyrinogen IX biosynthetic process	2.37E-03
54	GO:0006096: glycolytic process	2.60E-03
55	GO:0043085: positive regulation of catalytic activity	2.61E-03
56	GO:0000272: polysaccharide catabolic process	2.61E-03
57	GO:0018119: peptidyl-cysteine S-nitrosylation	2.61E-03
58	GO:0000038: very long-chain fatty acid metabolic process	2.61E-03
59	GO:0002213: defense response to insect	2.86E-03
60	GO:0042545: cell wall modification	3.03E-03
61	GO:0006108: malate metabolic process	3.12E-03
62	GO:0009266: response to temperature stimulus	3.38E-03
63	GO:0009409: response to cold	4.38E-03
64	GO:0009695: jasmonic acid biosynthetic process	4.52E-03
65	GO:0009768: photosynthesis, light harvesting in photosystem I	4.52E-03
66	GO:0009735: response to cytokinin	4.64E-03
67	GO:0016998: cell wall macromolecule catabolic process	4.82E-03
68	GO:0006810: transport	4.95E-03
69	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.13E-03
70	GO:0030433: ubiquitin-dependent ERAD pathway	5.13E-03
71	GO:0009416: response to light stimulus	5.19E-03
72	GO:0045490: pectin catabolic process	5.37E-03
73	GO:0016117: carotenoid biosynthetic process	6.10E-03
74	GO:0042335: cuticle development	6.44E-03
75	GO:0010118: stomatal movement	6.44E-03
76	GO:0006662: glycerol ether metabolic process	6.78E-03
77	GO:0048868: pollen tube development	6.78E-03
78	GO:0008654: phospholipid biosynthetic process	7.49E-03
79	GO:0010193: response to ozone	7.85E-03
80	GO:0009658: chloroplast organization	8.30E-03
81	GO:0042128: nitrate assimilation	1.10E-02
82	GO:0010411: xyloglucan metabolic process	1.14E-02
83	GO:0016311: dephosphorylation	1.18E-02
84	GO:0018298: protein-chromophore linkage	1.22E-02
85	GO:0042742: defense response to bacterium	1.27E-02
86	GO:0010311: lateral root formation	1.27E-02
87	GO:0000160: phosphorelay signal transduction system	1.27E-02
88	GO:0010218: response to far red light	1.31E-02
89	GO:0009637: response to blue light	1.45E-02
90	GO:0009853: photorespiration	1.45E-02
91	GO:0016042: lipid catabolic process	1.48E-02
92	GO:0006099: tricarboxylic acid cycle	1.49E-02
93	GO:0042542: response to hydrogen peroxide	1.68E-02
94	GO:0010114: response to red light	1.73E-02
95	GO:0042546: cell wall biogenesis	1.78E-02
96	GO:0000209: protein polyubiquitination	1.78E-02
97	GO:0009644: response to high light intensity	1.83E-02
98	GO:0006364: rRNA processing	2.14E-02
99	GO:0009736: cytokinin-activated signaling pathway	2.14E-02
100	GO:0010224: response to UV-B	2.19E-02
101	GO:0009611: response to wounding	2.77E-02
102	GO:0045893: positive regulation of transcription, DNA-templated	3.11E-02
103	GO:0009737: response to abscisic acid	3.29E-02
104	GO:0016036: cellular response to phosphate starvation	3.86E-02
105	GO:0007623: circadian rhythm	4.06E-02
106	GO:0010468: regulation of gene expression	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0008465: glycerate dehydrogenase activity	0.00E+00
4	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
5	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
6	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
7	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
8	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
9	GO:0004565: beta-galactosidase activity	2.38E-06
10	GO:0004332: fructose-bisphosphate aldolase activity	1.48E-05
11	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.35E-05
12	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	7.75E-05
13	GO:0031957: very long-chain fatty acid-CoA ligase activity	7.75E-05
14	GO:0005344: oxygen transporter activity	7.75E-05
15	GO:0035671: enone reductase activity	7.75E-05
16	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	7.75E-05
17	GO:0004512: inositol-3-phosphate synthase activity	1.85E-04
18	GO:0008883: glutamyl-tRNA reductase activity	1.85E-04
19	GO:0047746: chlorophyllase activity	1.85E-04
20	GO:0042389: omega-3 fatty acid desaturase activity	1.85E-04
21	GO:0010297: heteropolysaccharide binding	1.85E-04
22	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	3.11E-04
23	GO:0050734: hydroxycinnamoyltransferase activity	3.11E-04
24	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	4.49E-04
25	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	7.57E-04
26	GO:0009922: fatty acid elongase activity	7.57E-04
27	GO:0004029: aldehyde dehydrogenase (NAD) activity	9.24E-04
28	GO:0016615: malate dehydrogenase activity	9.24E-04
29	GO:0102391: decanoate--CoA ligase activity	1.10E-03
30	GO:0030060: L-malate dehydrogenase activity	1.10E-03
31	GO:0004620: phospholipase activity	1.29E-03
32	GO:0004467: long-chain fatty acid-CoA ligase activity	1.29E-03
33	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.69E-03
34	GO:0051537: 2 iron, 2 sulfur cluster binding	1.78E-03
35	GO:0008047: enzyme activator activity	2.37E-03
36	GO:0045330: aspartyl esterase activity	2.44E-03
37	GO:0030599: pectinesterase activity	2.94E-03
38	GO:0008266: poly(U) RNA binding	3.38E-03
39	GO:0008289: lipid binding	3.82E-03
40	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.94E-03
41	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.94E-03
42	GO:0031409: pigment binding	3.94E-03
43	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.94E-03
44	GO:0047134: protein-disulfide reductase activity	6.10E-03
45	GO:0042802: identical protein binding	6.82E-03
46	GO:0050662: coenzyme binding	7.13E-03
47	GO:0004791: thioredoxin-disulfide reductase activity	7.13E-03
48	GO:0016853: isomerase activity	7.13E-03
49	GO:0030246: carbohydrate binding	7.57E-03
50	GO:0016762: xyloglucan:xyloglucosyl transferase activity	7.85E-03
51	GO:0016788: hydrolase activity, acting on ester bonds	8.46E-03
52	GO:0000156: phosphorelay response regulator activity	8.59E-03
53	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.59E-03
54	GO:0016168: chlorophyll binding	1.06E-02
55	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.14E-02
56	GO:0052689: carboxylic ester hydrolase activity	1.14E-02
57	GO:0003993: acid phosphatase activity	1.49E-02
58	GO:0050661: NADP binding	1.59E-02
59	GO:0051287: NAD binding	1.98E-02
60	GO:0031625: ubiquitin protein ligase binding	2.30E-02
61	GO:0015035: protein disulfide oxidoreductase activity	2.81E-02
62	GO:0019843: rRNA binding	3.23E-02
63	GO:0016787: hydrolase activity	3.31E-02
64	GO:0019825: oxygen binding	3.85E-02
65	GO:0003743: translation initiation factor activity	4.53E-02
66	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0009534: chloroplast thylakoid	1.37E-17
4	GO:0009507: chloroplast	5.05E-17
5	GO:0009535: chloroplast thylakoid membrane	3.69E-12
6	GO:0009941: chloroplast envelope	5.91E-08
7	GO:0009579: thylakoid	1.30E-07
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.95E-07
9	GO:0048046: apoplast	1.61E-06
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.85E-04
11	GO:0031969: chloroplast membrane	2.13E-04
12	GO:0009570: chloroplast stroma	4.22E-04
13	GO:0010287: plastoglobule	4.28E-04
14	GO:0009543: chloroplast thylakoid lumen	4.59E-04
15	GO:0010319: stromule	7.15E-04
16	GO:0031977: thylakoid lumen	1.52E-03
17	GO:0005618: cell wall	1.79E-03
18	GO:0008180: COP9 signalosome	1.91E-03
19	GO:0030095: chloroplast photosystem II	3.38E-03
20	GO:0030076: light-harvesting complex	3.66E-03
21	GO:0009505: plant-type cell wall	3.89E-03
22	GO:0043234: protein complex	3.94E-03
23	GO:0009654: photosystem II oxygen evolving complex	4.52E-03
24	GO:0005777: peroxisome	6.19E-03
25	GO:0009522: photosystem I	7.13E-03
26	GO:0009523: photosystem II	7.49E-03
27	GO:0019898: extrinsic component of membrane	7.49E-03
28	GO:0005773: vacuole	1.07E-02
29	GO:0019005: SCF ubiquitin ligase complex	1.22E-02
30	GO:0000502: proteasome complex	2.14E-02
31	GO:0016021: integral component of membrane	2.58E-02
32	GO:0005623: cell	3.29E-02
33	GO:0005576: extracellular region	3.96E-02