Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G12460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902171: regulation of tocopherol cyclase activity0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
4GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0005996: monosaccharide metabolic process0.00E+00
8GO:0046471: phosphatidylglycerol metabolic process0.00E+00
9GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
10GO:0009661: chromoplast organization0.00E+00
11GO:0015979: photosynthesis4.44E-09
12GO:0009773: photosynthetic electron transport in photosystem I1.52E-08
13GO:0015995: chlorophyll biosynthetic process2.85E-07
14GO:0010207: photosystem II assembly2.76E-06
15GO:0055114: oxidation-reduction process8.31E-06
16GO:0032544: plastid translation1.54E-05
17GO:0090391: granum assembly1.84E-05
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.07E-05
19GO:0015994: chlorophyll metabolic process7.23E-05
20GO:0016120: carotene biosynthetic process1.13E-04
21GO:0006636: unsaturated fatty acid biosynthetic process1.22E-04
22GO:0042549: photosystem II stabilization1.63E-04
23GO:0010190: cytochrome b6f complex assembly1.63E-04
24GO:0009228: thiamine biosynthetic process1.63E-04
25GO:0009768: photosynthesis, light harvesting in photosystem I1.65E-04
26GO:1901259: chloroplast rRNA processing2.22E-04
27GO:0010189: vitamin E biosynthetic process2.22E-04
28GO:0010114: response to red light3.05E-04
29GO:0031998: regulation of fatty acid beta-oxidation3.40E-04
30GO:0010028: xanthophyll cycle3.40E-04
31GO:0034337: RNA folding3.40E-04
32GO:0046467: membrane lipid biosynthetic process3.40E-04
33GO:0005980: glycogen catabolic process3.40E-04
34GO:0043953: protein transport by the Tat complex3.40E-04
35GO:0015671: oxygen transport3.40E-04
36GO:0071277: cellular response to calcium ion3.40E-04
37GO:0065002: intracellular protein transmembrane transport3.40E-04
38GO:0080093: regulation of photorespiration3.40E-04
39GO:0050821: protein stabilization3.64E-04
40GO:0019252: starch biosynthetic process4.50E-04
41GO:0006098: pentose-phosphate shunt5.35E-04
42GO:0090333: regulation of stomatal closure5.35E-04
43GO:0005982: starch metabolic process6.32E-04
44GO:0016122: xanthophyll metabolic process7.40E-04
45GO:0051645: Golgi localization7.40E-04
46GO:0080029: cellular response to boron-containing substance levels7.40E-04
47GO:0060151: peroxisome localization7.40E-04
48GO:0006898: receptor-mediated endocytosis7.40E-04
49GO:0034755: iron ion transmembrane transport7.40E-04
50GO:0071457: cellular response to ozone7.40E-04
51GO:1904143: positive regulation of carotenoid biosynthetic process7.40E-04
52GO:0010027: thylakoid membrane organization7.86E-04
53GO:0006094: gluconeogenesis1.10E-03
54GO:0030048: actin filament-based movement1.10E-03
55GO:0005977: glycogen metabolic process1.20E-03
56GO:0006518: peptide metabolic process1.20E-03
57GO:0051646: mitochondrion localization1.20E-03
58GO:0090436: leaf pavement cell development1.20E-03
59GO:0010143: cutin biosynthetic process1.23E-03
60GO:0009735: response to cytokinin1.55E-03
61GO:0046713: borate transport1.72E-03
62GO:1902358: sulfate transmembrane transport1.72E-03
63GO:0006020: inositol metabolic process1.72E-03
64GO:0071484: cellular response to light intensity1.72E-03
65GO:0009152: purine ribonucleotide biosynthetic process1.72E-03
66GO:0046653: tetrahydrofolate metabolic process1.72E-03
67GO:0009052: pentose-phosphate shunt, non-oxidative branch1.72E-03
68GO:0006631: fatty acid metabolic process1.83E-03
69GO:0006810: transport1.88E-03
70GO:0071486: cellular response to high light intensity2.31E-03
71GO:0009765: photosynthesis, light harvesting2.31E-03
72GO:0045727: positive regulation of translation2.31E-03
73GO:0010107: potassium ion import2.31E-03
74GO:0006021: inositol biosynthetic process2.31E-03
75GO:0071483: cellular response to blue light2.31E-03
76GO:0010021: amylopectin biosynthetic process2.31E-03
77GO:0016117: carotenoid biosynthetic process2.90E-03
78GO:0006465: signal peptide processing2.96E-03
79GO:0071493: cellular response to UV-B2.96E-03
80GO:0098719: sodium ion import across plasma membrane2.96E-03
81GO:0006564: L-serine biosynthetic process2.96E-03
82GO:0009904: chloroplast accumulation movement2.96E-03
83GO:0010236: plastoquinone biosynthetic process2.96E-03
84GO:0006097: glyoxylate cycle2.96E-03
85GO:0042631: cellular response to water deprivation3.13E-03
86GO:0015986: ATP synthesis coupled proton transport3.63E-03
87GO:0010304: PSII associated light-harvesting complex II catabolic process3.65E-03
88GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.65E-03
89GO:1902456: regulation of stomatal opening3.65E-03
90GO:0046855: inositol phosphate dephosphorylation3.65E-03
91GO:0006096: glycolytic process3.68E-03
92GO:0009791: post-embryonic development3.89E-03
93GO:0009955: adaxial/abaxial pattern specification4.40E-03
94GO:0071333: cellular response to glucose stimulus4.40E-03
95GO:0009903: chloroplast avoidance movement4.40E-03
96GO:0009854: oxidative photosynthetic carbon pathway4.40E-03
97GO:0009772: photosynthetic electron transport in photosystem II5.19E-03
98GO:0010196: nonphotochemical quenching5.19E-03
99GO:1900057: positive regulation of leaf senescence5.19E-03
100GO:0009645: response to low light intensity stimulus5.19E-03
101GO:0008272: sulfate transport5.19E-03
102GO:0009769: photosynthesis, light harvesting in photosystem II5.19E-03
103GO:0005975: carbohydrate metabolic process5.94E-03
104GO:0008610: lipid biosynthetic process6.03E-03
105GO:0009642: response to light intensity6.03E-03
106GO:0009704: de-etiolation6.03E-03
107GO:0070413: trehalose metabolism in response to stress6.03E-03
108GO:0055075: potassium ion homeostasis6.03E-03
109GO:2000031: regulation of salicylic acid mediated signaling pathway6.92E-03
110GO:0071482: cellular response to light stimulus6.92E-03
111GO:0015996: chlorophyll catabolic process6.92E-03
112GO:0019430: removal of superoxide radicals6.92E-03
113GO:0009657: plastid organization6.92E-03
114GO:0009821: alkaloid biosynthetic process7.85E-03
115GO:0019432: triglyceride biosynthetic process7.85E-03
116GO:0006783: heme biosynthetic process7.85E-03
117GO:0006754: ATP biosynthetic process7.85E-03
118GO:0018298: protein-chromophore linkage7.88E-03
119GO:0006633: fatty acid biosynthetic process8.31E-03
120GO:0010218: response to far red light8.69E-03
121GO:0051453: regulation of intracellular pH8.82E-03
122GO:0006779: porphyrin-containing compound biosynthetic process8.82E-03
123GO:0009641: shade avoidance9.84E-03
124GO:0006782: protoporphyrinogen IX biosynthetic process9.84E-03
125GO:0009853: photorespiration1.00E-02
126GO:0009637: response to blue light1.00E-02
127GO:0034599: cellular response to oxidative stress1.05E-02
128GO:0043085: positive regulation of catalytic activity1.09E-02
129GO:0006879: cellular iron ion homeostasis1.09E-02
130GO:0006415: translational termination1.09E-02
131GO:0000272: polysaccharide catabolic process1.09E-02
132GO:0018119: peptidyl-cysteine S-nitrosylation1.09E-02
133GO:0006790: sulfur compound metabolic process1.20E-02
134GO:0002213: defense response to insect1.20E-02
135GO:0016024: CDP-diacylglycerol biosynthetic process1.20E-02
136GO:0009767: photosynthetic electron transport chain1.31E-02
137GO:0006108: malate metabolic process1.31E-02
138GO:0006006: glucose metabolic process1.31E-02
139GO:0009409: response to cold1.34E-02
140GO:0009266: response to temperature stimulus1.43E-02
141GO:0048467: gynoecium development1.43E-02
142GO:0007015: actin filament organization1.43E-02
143GO:0019253: reductive pentose-phosphate cycle1.43E-02
144GO:0010223: secondary shoot formation1.43E-02
145GO:0046854: phosphatidylinositol phosphorylation1.55E-02
146GO:0009658: chloroplast organization1.63E-02
147GO:0006364: rRNA processing1.75E-02
148GO:0005992: trehalose biosynthetic process1.80E-02
149GO:0009695: jasmonic acid biosynthetic process1.93E-02
150GO:0019915: lipid storage2.07E-02
151GO:0009269: response to desiccation2.07E-02
152GO:0016114: terpenoid biosynthetic process2.07E-02
153GO:0016998: cell wall macromolecule catabolic process2.07E-02
154GO:0080167: response to karrikin2.14E-02
155GO:0019748: secondary metabolic process2.21E-02
156GO:0016226: iron-sulfur cluster assembly2.21E-02
157GO:2000022: regulation of jasmonic acid mediated signaling pathway2.21E-02
158GO:0030433: ubiquitin-dependent ERAD pathway2.21E-02
159GO:0042742: defense response to bacterium2.22E-02
160GO:0009416: response to light stimulus2.23E-02
161GO:0071215: cellular response to abscisic acid stimulus2.35E-02
162GO:0042335: cuticle development2.79E-02
163GO:0000413: protein peptidyl-prolyl isomerization2.79E-02
164GO:0006885: regulation of pH2.94E-02
165GO:0006520: cellular amino acid metabolic process2.94E-02
166GO:0071472: cellular response to salt stress2.94E-02
167GO:0010154: fruit development2.94E-02
168GO:0006662: glycerol ether metabolic process2.94E-02
169GO:0006814: sodium ion transport3.10E-02
170GO:0009058: biosynthetic process3.28E-02
171GO:0032259: methylation3.31E-02
172GO:0032502: developmental process3.58E-02
173GO:0009630: gravitropism3.58E-02
174GO:1901657: glycosyl compound metabolic process3.75E-02
175GO:0010090: trichome morphogenesis3.75E-02
176GO:0009567: double fertilization forming a zygote and endosperm3.92E-02
177GO:0051607: defense response to virus4.26E-02
178GO:0046686: response to cadmium ion4.62E-02
179GO:0042128: nitrate assimilation4.80E-02
180GO:0006974: cellular response to DNA damage stimulus4.80E-02
181GO:0010411: xyloglucan metabolic process4.98E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
3GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
4GO:0046422: violaxanthin de-epoxidase activity0.00E+00
5GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
6GO:0045550: geranylgeranyl reductase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0016166: phytoene dehydrogenase activity0.00E+00
9GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
10GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
11GO:0008465: glycerate dehydrogenase activity0.00E+00
12GO:0046408: chlorophyll synthetase activity0.00E+00
13GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
14GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
15GO:0009011: starch synthase activity5.92E-07
16GO:0016851: magnesium chelatase activity4.07E-05
17GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.23E-05
18GO:0031409: pigment binding1.22E-04
19GO:0004332: fructose-bisphosphate aldolase activity1.63E-04
20GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.40E-04
21GO:0005344: oxygen transporter activity3.40E-04
22GO:0035671: enone reductase activity3.40E-04
23GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.40E-04
24GO:0008184: glycogen phosphorylase activity3.40E-04
25GO:0004645: phosphorylase activity3.40E-04
26GO:0009374: biotin binding3.40E-04
27GO:0034256: chlorophyll(ide) b reductase activity3.40E-04
28GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.40E-04
29GO:0015168: glycerol transmembrane transporter activity3.40E-04
30GO:0045486: naringenin 3-dioxygenase activity3.40E-04
31GO:0016491: oxidoreductase activity4.68E-04
32GO:0030234: enzyme regulator activity7.37E-04
33GO:0010297: heteropolysaccharide binding7.40E-04
34GO:0009977: proton motive force dependent protein transmembrane transporter activity7.40E-04
35GO:0004617: phosphoglycerate dehydrogenase activity7.40E-04
36GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.40E-04
37GO:0052832: inositol monophosphate 3-phosphatase activity7.40E-04
38GO:0033201: alpha-1,4-glucan synthase activity7.40E-04
39GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.40E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity7.40E-04
41GO:0019172: glyoxalase III activity7.40E-04
42GO:0019156: isoamylase activity7.40E-04
43GO:0052833: inositol monophosphate 4-phosphatase activity7.40E-04
44GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.40E-04
45GO:0008883: glutamyl-tRNA reductase activity7.40E-04
46GO:0047746: chlorophyllase activity7.40E-04
47GO:0042389: omega-3 fatty acid desaturase activity7.40E-04
48GO:0016168: chlorophyll binding8.43E-04
49GO:0004565: beta-galactosidase activity1.10E-03
50GO:0008864: formyltetrahydrofolate deformylase activity1.20E-03
51GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.20E-03
52GO:0004373: glycogen (starch) synthase activity1.20E-03
53GO:0050734: hydroxycinnamoyltransferase activity1.20E-03
54GO:0004751: ribose-5-phosphate isomerase activity1.20E-03
55GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.20E-03
56GO:0003774: motor activity1.23E-03
57GO:0016149: translation release factor activity, codon specific1.72E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.72E-03
59GO:0046715: borate transmembrane transporter activity1.72E-03
60GO:0015204: urea transmembrane transporter activity2.31E-03
61GO:0051287: NAD binding2.60E-03
62GO:0042802: identical protein binding2.77E-03
63GO:0003989: acetyl-CoA carboxylase activity2.96E-03
64GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.96E-03
65GO:2001070: starch binding3.65E-03
66GO:0004556: alpha-amylase activity3.65E-03
67GO:0004462: lactoylglutathione lyase activity3.65E-03
68GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.65E-03
69GO:0004784: superoxide dismutase activity3.65E-03
70GO:0015081: sodium ion transmembrane transporter activity3.65E-03
71GO:0016615: malate dehydrogenase activity3.65E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.65E-03
73GO:0048038: quinone binding4.17E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.40E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.40E-03
76GO:0030060: L-malate dehydrogenase activity4.40E-03
77GO:0016791: phosphatase activity5.05E-03
78GO:0019843: rRNA binding6.21E-03
79GO:0008135: translation factor activity, RNA binding6.92E-03
80GO:0008271: secondary active sulfate transmembrane transporter activity6.92E-03
81GO:0015078: hydrogen ion transmembrane transporter activity6.92E-03
82GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.92E-03
83GO:0003747: translation release factor activity7.85E-03
84GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.82E-03
85GO:0005381: iron ion transmembrane transporter activity8.82E-03
86GO:0016844: strictosidine synthase activity8.82E-03
87GO:0008047: enzyme activator activity9.84E-03
88GO:0003746: translation elongation factor activity1.00E-02
89GO:0047372: acylglycerol lipase activity1.09E-02
90GO:0015386: potassium:proton antiporter activity1.09E-02
91GO:0050661: NADP binding1.14E-02
92GO:0015116: sulfate transmembrane transporter activity1.20E-02
93GO:0004185: serine-type carboxypeptidase activity1.29E-02
94GO:0031072: heat shock protein binding1.31E-02
95GO:0003725: double-stranded RNA binding1.31E-02
96GO:0004022: alcohol dehydrogenase (NAD) activity1.31E-02
97GO:0051537: 2 iron, 2 sulfur cluster binding1.40E-02
98GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.43E-02
99GO:0008266: poly(U) RNA binding1.43E-02
100GO:0008168: methyltransferase activity1.56E-02
101GO:0051536: iron-sulfur cluster binding1.80E-02
102GO:0031418: L-ascorbic acid binding1.80E-02
103GO:0003727: single-stranded RNA binding2.49E-02
104GO:0047134: protein-disulfide reductase activity2.64E-02
105GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.94E-02
106GO:0004791: thioredoxin-disulfide reductase activity3.10E-02
107GO:0016853: isomerase activity3.10E-02
108GO:0050662: coenzyme binding3.10E-02
109GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.20E-02
110GO:0016762: xyloglucan:xyloglucosyl transferase activity3.42E-02
111GO:0015385: sodium:proton antiporter activity3.75E-02
112GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.75E-02
113GO:0016722: oxidoreductase activity, oxidizing metal ions4.09E-02
114GO:0016597: amino acid binding4.26E-02
115GO:0015250: water channel activity4.44E-02
116GO:0016798: hydrolase activity, acting on glycosyl bonds4.98E-02
117GO:0102483: scopolin beta-glucosidase activity4.98E-02
118GO:0003743: translation initiation factor activity4.99E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast1.76E-46
4GO:0009534: chloroplast thylakoid1.18E-31
5GO:0009535: chloroplast thylakoid membrane1.64E-30
6GO:0009941: chloroplast envelope6.88E-23
7GO:0009579: thylakoid5.15E-18
8GO:0009570: chloroplast stroma6.10E-15
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.38E-09
10GO:0010287: plastoglobule4.56E-09
11GO:0009543: chloroplast thylakoid lumen5.83E-09
12GO:0031977: thylakoid lumen6.14E-08
13GO:0031969: chloroplast membrane4.89E-06
14GO:0009654: photosystem II oxygen evolving complex7.32E-06
15GO:0010007: magnesium chelatase complex1.84E-05
16GO:0048046: apoplast3.24E-05
17GO:0019898: extrinsic component of membrane3.46E-05
18GO:0010319: stromule6.49E-05
19GO:0030076: light-harvesting complex1.04E-04
20GO:0031361: integral component of thylakoid membrane3.40E-04
21GO:0009515: granal stacked thylakoid3.40E-04
22GO:0005787: signal peptidase complex3.40E-04
23GO:0009344: nitrite reductase complex [NAD(P)H]3.40E-04
24GO:0009522: photosystem I4.11E-04
25GO:0016459: myosin complex7.37E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex7.40E-04
27GO:0043036: starch grain7.40E-04
28GO:0033281: TAT protein transport complex1.20E-03
29GO:0009509: chromoplast1.20E-03
30GO:0009317: acetyl-CoA carboxylase complex1.20E-03
31GO:0030095: chloroplast photosystem II1.23E-03
32GO:0009517: PSII associated light-harvesting complex II2.31E-03
33GO:0009544: chloroplast ATP synthase complex2.31E-03
34GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.65E-03
35GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.65E-03
36GO:0009523: photosystem II3.89E-03
37GO:0009501: amyloplast6.03E-03
38GO:0031982: vesicle6.03E-03
39GO:0005763: mitochondrial small ribosomal subunit7.85E-03
40GO:0008180: COP9 signalosome7.85E-03
41GO:0032040: small-subunit processome1.20E-02
42GO:0005773: vacuole1.64E-02
43GO:0043234: protein complex1.67E-02
44GO:0042651: thylakoid membrane1.93E-02
45GO:0015935: small ribosomal subunit2.07E-02
46GO:0005777: peroxisome2.73E-02
47GO:0009536: plastid3.12E-02
48GO:0005623: cell3.20E-02
49GO:0005618: cell wall4.37E-02
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Gene type



Gene DE type