co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0070979: protein K11-linked ubiquitination	0.00E+00
4	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
5	GO:0033231: carbohydrate export	0.00E+00
6	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
7	GO:0000373: Group II intron splicing	1.94E-05
8	GO:0010582: floral meristem determinacy	5.40E-05
9	GO:0005992: trehalose biosynthetic process	1.32E-04
10	GO:1902025: nitrate import	3.27E-04
11	GO:0009090: homoserine biosynthetic process	3.27E-04
12	GO:0043266: regulation of potassium ion transport	3.27E-04
13	GO:0010080: regulation of floral meristem growth	3.27E-04
14	GO:2000021: regulation of ion homeostasis	3.27E-04
15	GO:0090548: response to nitrate starvation	3.27E-04
16	GO:0000066: mitochondrial ornithine transport	3.27E-04
17	GO:0034757: negative regulation of iron ion transport	3.27E-04
18	GO:1902334: fructose export from vacuole to cytoplasm	3.27E-04
19	GO:0015755: fructose transport	3.27E-04
20	GO:0051382: kinetochore assembly	3.27E-04
21	GO:0009657: plastid organization	4.21E-04
22	GO:1900871: chloroplast mRNA modification	7.13E-04
23	GO:0010271: regulation of chlorophyll catabolic process	7.13E-04
24	GO:0009786: regulation of asymmetric cell division	7.13E-04
25	GO:0031297: replication fork processing	7.13E-04
26	GO:0080117: secondary growth	1.16E-03
27	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.16E-03
28	GO:0010623: programmed cell death involved in cell development	1.16E-03
29	GO:0071398: cellular response to fatty acid	1.16E-03
30	GO:0030029: actin filament-based process	1.16E-03
31	GO:0010022: meristem determinacy	1.16E-03
32	GO:0040008: regulation of growth	1.64E-03
33	GO:1990019: protein storage vacuole organization	1.66E-03
34	GO:0009800: cinnamic acid biosynthetic process	1.66E-03
35	GO:0009067: aspartate family amino acid biosynthetic process	1.66E-03
36	GO:0010371: regulation of gibberellin biosynthetic process	1.66E-03
37	GO:0051513: regulation of monopolar cell growth	1.66E-03
38	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.66E-03
39	GO:0051639: actin filament network formation	1.66E-03
40	GO:0034059: response to anoxia	1.66E-03
41	GO:0010239: chloroplast mRNA processing	1.66E-03
42	GO:0042989: sequestering of actin monomers	1.66E-03
43	GO:0010431: seed maturation	1.95E-03
44	GO:0008295: spermidine biosynthetic process	2.23E-03
45	GO:0009755: hormone-mediated signaling pathway	2.23E-03
46	GO:0051764: actin crosslink formation	2.23E-03
47	GO:0048442: sepal development	2.23E-03
48	GO:0010508: positive regulation of autophagy	2.23E-03
49	GO:0071215: cellular response to abscisic acid stimulus	2.33E-03
50	GO:0070417: cellular response to cold	2.74E-03
51	GO:0080110: sporopollenin biosynthetic process	2.84E-03
52	GO:0016131: brassinosteroid metabolic process	2.84E-03
53	GO:0030041: actin filament polymerization	2.84E-03
54	GO:0016123: xanthophyll biosynthetic process	2.84E-03
55	GO:0010438: cellular response to sulfur starvation	2.84E-03
56	GO:0010158: abaxial cell fate specification	2.84E-03
57	GO:0032876: negative regulation of DNA endoreduplication	2.84E-03
58	GO:0009696: salicylic acid metabolic process	2.84E-03
59	GO:0010087: phloem or xylem histogenesis	2.96E-03
60	GO:0048831: regulation of shoot system development	3.51E-03
61	GO:0010190: cytochrome b6f complex assembly	3.51E-03
62	GO:0003006: developmental process involved in reproduction	3.51E-03
63	GO:0006559: L-phenylalanine catabolic process	3.51E-03
64	GO:0000302: response to reactive oxygen species	3.94E-03
65	GO:0031930: mitochondria-nucleus signaling pathway	4.23E-03
66	GO:0010076: maintenance of floral meristem identity	4.23E-03
67	GO:0048509: regulation of meristem development	4.23E-03
68	GO:0009088: threonine biosynthetic process	4.23E-03
69	GO:0009648: photoperiodism	4.23E-03
70	GO:0051510: regulation of unidimensional cell growth	4.99E-03
71	GO:0000712: resolution of meiotic recombination intermediates	4.99E-03
72	GO:0010050: vegetative phase change	4.99E-03
73	GO:0010439: regulation of glucosinolate biosynthetic process	5.80E-03
74	GO:0070413: trehalose metabolism in response to stress	5.80E-03
75	GO:0009850: auxin metabolic process	5.80E-03
76	GO:0032875: regulation of DNA endoreduplication	5.80E-03
77	GO:2000070: regulation of response to water deprivation	5.80E-03
78	GO:0009819: drought recovery	5.80E-03
79	GO:0009845: seed germination	6.39E-03
80	GO:0032544: plastid translation	6.65E-03
81	GO:0007129: synapsis	6.65E-03
82	GO:0071482: cellular response to light stimulus	6.65E-03
83	GO:0006098: pentose-phosphate shunt	7.54E-03
84	GO:0048507: meristem development	7.54E-03
85	GO:0000160: phosphorelay signal transduction system	7.82E-03
86	GO:0016571: histone methylation	8.48E-03
87	GO:0016573: histone acetylation	8.48E-03
88	GO:0010018: far-red light signaling pathway	8.48E-03
89	GO:0009086: methionine biosynthetic process	8.48E-03
90	GO:1900865: chloroplast RNA modification	8.48E-03
91	GO:0048527: lateral root development	8.61E-03
92	GO:0009451: RNA modification	8.97E-03
93	GO:0009299: mRNA transcription	9.45E-03
94	GO:0009870: defense response signaling pathway, resistance gene-dependent	9.45E-03
95	GO:0006535: cysteine biosynthetic process from serine	9.45E-03
96	GO:0048829: root cap development	9.45E-03
97	GO:0006995: cellular response to nitrogen starvation	9.45E-03
98	GO:0048441: petal development	9.45E-03
99	GO:0006415: translational termination	1.05E-02
100	GO:0009089: lysine biosynthetic process via diaminopimelate	1.05E-02
101	GO:0009750: response to fructose	1.05E-02
102	GO:0009682: induced systemic resistance	1.05E-02
103	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.15E-02
104	GO:0008283: cell proliferation	1.22E-02
105	GO:0009725: response to hormone	1.26E-02
106	GO:0006094: gluconeogenesis	1.26E-02
107	GO:0009266: response to temperature stimulus	1.37E-02
108	GO:0048467: gynoecium development	1.37E-02
109	GO:0048440: carpel development	1.37E-02
110	GO:0009636: response to toxic substance	1.37E-02
111	GO:0010020: chloroplast fission	1.37E-02
112	GO:0090351: seedling development	1.49E-02
113	GO:0042753: positive regulation of circadian rhythm	1.61E-02
114	GO:0006863: purine nucleobase transport	1.61E-02
115	GO:0019762: glucosinolate catabolic process	1.61E-02
116	GO:0009736: cytokinin-activated signaling pathway	1.65E-02
117	GO:0006364: rRNA processing	1.65E-02
118	GO:0007010: cytoskeleton organization	1.73E-02
119	GO:0051017: actin filament bundle assembly	1.73E-02
120	GO:0019344: cysteine biosynthetic process	1.73E-02
121	GO:0030150: protein import into mitochondrial matrix	1.73E-02
122	GO:0006338: chromatin remodeling	1.73E-02
123	GO:0051260: protein homooligomerization	1.99E-02
124	GO:0048316: seed development	2.02E-02
125	GO:0035428: hexose transmembrane transport	2.12E-02
126	GO:0009625: response to insect	2.25E-02
127	GO:0009693: ethylene biosynthetic process	2.25E-02
128	GO:0010089: xylem development	2.39E-02
129	GO:0010584: pollen exine formation	2.39E-02
130	GO:0048443: stamen development	2.39E-02
131	GO:0016117: carotenoid biosynthetic process	2.53E-02
132	GO:0009958: positive gravitropism	2.82E-02
133	GO:0006520: cellular amino acid metabolic process	2.82E-02
134	GO:0010182: sugar mediated signaling pathway	2.82E-02
135	GO:0046323: glucose import	2.82E-02
136	GO:0009741: response to brassinosteroid	2.82E-02
137	GO:0010268: brassinosteroid homeostasis	2.82E-02
138	GO:0048544: recognition of pollen	2.97E-02
139	GO:0009646: response to absence of light	2.97E-02
140	GO:0071554: cell wall organization or biogenesis	3.28E-02
141	GO:0010583: response to cyclopentenone	3.44E-02
142	GO:0016032: viral process	3.44E-02
143	GO:0019761: glucosinolate biosynthetic process	3.44E-02
144	GO:0007264: small GTPase mediated signal transduction	3.44E-02
145	GO:0006952: defense response	3.54E-02
146	GO:0009639: response to red or far red light	3.76E-02
147	GO:0006464: cellular protein modification process	3.76E-02
148	GO:0051607: defense response to virus	4.09E-02
149	GO:0001666: response to hypoxia	4.26E-02
150	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.43E-02
151	GO:0010029: regulation of seed germination	4.43E-02
152	GO:0009627: systemic acquired resistance	4.61E-02
153	GO:0007166: cell surface receptor signaling pathway	4.63E-02
154	GO:0010411: xyloglucan metabolic process	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
2	GO:0015284: fructose uniporter activity	0.00E+00
3	GO:0004805: trehalose-phosphatase activity	3.39E-05
4	GO:0008395: steroid hydroxylase activity	3.27E-04
5	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.27E-04
6	GO:0005227: calcium activated cation channel activity	3.27E-04
7	GO:0080042: ADP-glucose pyrophosphohydrolase activity	3.27E-04
8	GO:0005290: L-histidine transmembrane transporter activity	3.27E-04
9	GO:0050736: O-malonyltransferase activity	7.13E-04
10	GO:0009884: cytokinin receptor activity	7.13E-04
11	GO:0005353: fructose transmembrane transporter activity	7.13E-04
12	GO:0050017: L-3-cyanoalanine synthase activity	7.13E-04
13	GO:0017118: lipoyltransferase activity	7.13E-04
14	GO:0080041: ADP-ribose pyrophosphohydrolase activity	7.13E-04
15	GO:0043425: bHLH transcription factor binding	7.13E-04
16	GO:0004766: spermidine synthase activity	7.13E-04
17	GO:0008805: carbon-monoxide oxygenase activity	7.13E-04
18	GO:0000064: L-ornithine transmembrane transporter activity	7.13E-04
19	GO:0004412: homoserine dehydrogenase activity	7.13E-04
20	GO:0005034: osmosensor activity	1.16E-03
21	GO:0045548: phenylalanine ammonia-lyase activity	1.16E-03
22	GO:0004148: dihydrolipoyl dehydrogenase activity	1.16E-03
23	GO:0016149: translation release factor activity, codon specific	1.66E-03
24	GO:0080031: methyl salicylate esterase activity	1.66E-03
25	GO:0001872: (1->3)-beta-D-glucan binding	1.66E-03
26	GO:0015189: L-lysine transmembrane transporter activity	1.66E-03
27	GO:0004072: aspartate kinase activity	1.66E-03
28	GO:0015181: arginine transmembrane transporter activity	1.66E-03
29	GO:0042277: peptide binding	2.23E-03
30	GO:0052793: pectin acetylesterase activity	2.23E-03
31	GO:0019199: transmembrane receptor protein kinase activity	2.23E-03
32	GO:0003785: actin monomer binding	2.84E-03
33	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.84E-03
34	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.51E-03
35	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	3.51E-03
36	GO:0016688: L-ascorbate peroxidase activity	3.51E-03
37	GO:0080030: methyl indole-3-acetate esterase activity	3.51E-03
38	GO:0004332: fructose-bisphosphate aldolase activity	3.51E-03
39	GO:0004709: MAP kinase kinase kinase activity	3.51E-03
40	GO:0004130: cytochrome-c peroxidase activity	3.51E-03
41	GO:0019900: kinase binding	4.23E-03
42	GO:0004124: cysteine synthase activity	4.23E-03
43	GO:0043022: ribosome binding	5.80E-03
44	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.54E-03
45	GO:0003747: translation release factor activity	7.54E-03
46	GO:0003924: GTPase activity	8.63E-03
47	GO:0004673: protein histidine kinase activity	9.45E-03
48	GO:0030234: enzyme regulator activity	9.45E-03
49	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	9.65E-03
50	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.05E-02
51	GO:0000155: phosphorelay sensor kinase activity	1.26E-02
52	GO:0009982: pseudouridine synthase activity	1.26E-02
53	GO:0015266: protein channel activity	1.26E-02
54	GO:0043621: protein self-association	1.32E-02
55	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.37E-02
56	GO:0051119: sugar transmembrane transporter activity	1.49E-02
57	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.61E-02
58	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.61E-02
59	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.61E-02
60	GO:0003723: RNA binding	1.68E-02
61	GO:0003690: double-stranded DNA binding	1.71E-02
62	GO:0031418: L-ascorbic acid binding	1.73E-02
63	GO:0043424: protein histidine kinase binding	1.86E-02
64	GO:0005345: purine nucleobase transmembrane transporter activity	1.86E-02
65	GO:0003964: RNA-directed DNA polymerase activity	1.99E-02
66	GO:0016787: hydrolase activity	2.87E-02
67	GO:0010181: FMN binding	2.97E-02
68	GO:0005355: glucose transmembrane transporter activity	2.97E-02
69	GO:0050662: coenzyme binding	2.97E-02
70	GO:0016491: oxidoreductase activity	3.20E-02
71	GO:0030170: pyridoxal phosphate binding	3.27E-02
72	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.28E-02
73	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.35E-02
74	GO:0004518: nuclease activity	3.44E-02
75	GO:0000156: phosphorelay response regulator activity	3.60E-02
76	GO:0004519: endonuclease activity	3.60E-02
77	GO:0051015: actin filament binding	3.60E-02
78	GO:0016791: phosphatase activity	3.76E-02
79	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.78E-02
80	GO:0005200: structural constituent of cytoskeleton	3.92E-02
81	GO:0016597: amino acid binding	4.09E-02
82	GO:0016413: O-acetyltransferase activity	4.09E-02
83	GO:0051213: dioxygenase activity	4.26E-02
84	GO:0030247: polysaccharide binding	4.78E-02
85	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0043240: Fanconi anaemia nuclear complex	3.27E-04
4	GO:0071821: FANCM-MHF complex	3.27E-04
5	GO:0009513: etioplast	7.13E-04
6	GO:0030139: endocytic vesicle	1.16E-03
7	GO:0009509: chromoplast	1.16E-03
8	GO:0032585: multivesicular body membrane	1.66E-03
9	GO:0032432: actin filament bundle	1.66E-03
10	GO:0009986: cell surface	4.99E-03
11	GO:0031305: integral component of mitochondrial inner membrane	5.80E-03
12	GO:0009501: amyloplast	5.80E-03
13	GO:0005680: anaphase-promoting complex	7.54E-03
14	GO:0016604: nuclear body	8.48E-03
15	GO:0005884: actin filament	1.05E-02
16	GO:0005938: cell cortex	1.26E-02
17	GO:0009508: plastid chromosome	1.26E-02
18	GO:0030095: chloroplast photosystem II	1.37E-02
19	GO:0042651: thylakoid membrane	1.86E-02
20	GO:0009654: photosystem II oxygen evolving complex	1.86E-02
21	GO:0009507: chloroplast	2.20E-02
22	GO:0015629: actin cytoskeleton	2.25E-02
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.39E-02
24	GO:0019898: extrinsic component of membrane	3.12E-02
25	GO:0031965: nuclear membrane	3.12E-02
26	GO:0009295: nucleoid	3.92E-02
27	GO:0009705: plant-type vacuole membrane	4.05E-02
28	GO:0030529: intracellular ribonucleoprotein complex	4.26E-02