co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042820: vitamin B6 catabolic process	0.00E+00
2	GO:0016118: carotenoid catabolic process	0.00E+00
3	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
4	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
5	GO:1905157: positive regulation of photosynthesis	0.00E+00
6	GO:0015843: methylammonium transport	0.00E+00
7	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
8	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
9	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
10	GO:0033494: ferulate metabolic process	0.00E+00
11	GO:0042821: pyridoxal biosynthetic process	0.00E+00
12	GO:0009773: photosynthetic electron transport in photosystem I	5.99E-07
13	GO:0055114: oxidation-reduction process	2.62E-05
14	GO:0015979: photosynthesis	2.80E-05
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.94E-05
16	GO:0010207: photosystem II assembly	5.78E-05
17	GO:0010218: response to far red light	9.66E-05
18	GO:0009768: photosynthesis, light harvesting in photosystem I	1.12E-04
19	GO:0009228: thiamine biosynthetic process	1.22E-04
20	GO:0009637: response to blue light	1.24E-04
21	GO:0009854: oxidative photosynthetic carbon pathway	1.67E-04
22	GO:0010114: response to red light	1.94E-04
23	GO:0043953: protein transport by the Tat complex	2.82E-04
24	GO:0015671: oxygen transport	2.82E-04
25	GO:0071277: cellular response to calcium ion	2.82E-04
26	GO:0065002: intracellular protein transmembrane transport	2.82E-04
27	GO:0080093: regulation of photorespiration	2.82E-04
28	GO:0031998: regulation of fatty acid beta-oxidation	2.82E-04
29	GO:0000476: maturation of 4.5S rRNA	2.82E-04
30	GO:0009443: pyridoxal 5'-phosphate salvage	2.82E-04
31	GO:0000967: rRNA 5'-end processing	2.82E-04
32	GO:0046467: membrane lipid biosynthetic process	2.82E-04
33	GO:0019252: starch biosynthetic process	3.16E-04
34	GO:0009657: plastid organization	3.40E-04
35	GO:0090333: regulation of stomatal closure	4.10E-04
36	GO:0006098: pentose-phosphate shunt	4.10E-04
37	GO:0005982: starch metabolic process	4.86E-04
38	GO:0010541: acropetal auxin transport	6.19E-04
39	GO:0034755: iron ion transmembrane transport	6.19E-04
40	GO:0060151: peroxisome localization	6.19E-04
41	GO:0071457: cellular response to ozone	6.19E-04
42	GO:0016121: carotene catabolic process	6.19E-04
43	GO:0034470: ncRNA processing	6.19E-04
44	GO:0051645: Golgi localization	6.19E-04
45	GO:0016124: xanthophyll catabolic process	6.19E-04
46	GO:0015995: chlorophyll biosynthetic process	6.87E-04
47	GO:0018298: protein-chromophore linkage	7.82E-04
48	GO:0006094: gluconeogenesis	8.46E-04
49	GO:0048467: gynoecium development	9.50E-04
50	GO:0010143: cutin biosynthetic process	9.50E-04
51	GO:0006810: transport	9.72E-04
52	GO:0051646: mitochondrion localization	1.00E-03
53	GO:0090436: leaf pavement cell development	1.00E-03
54	GO:0010160: formation of animal organ boundary	1.00E-03
55	GO:0005977: glycogen metabolic process	1.00E-03
56	GO:0090391: granum assembly	1.00E-03
57	GO:0034599: cellular response to oxidative stress	1.11E-03
58	GO:0006636: unsaturated fatty acid biosynthetic process	1.18E-03
59	GO:0015696: ammonium transport	1.44E-03
60	GO:1902358: sulfate transmembrane transport	1.44E-03
61	GO:0071484: cellular response to light intensity	1.44E-03
62	GO:0009152: purine ribonucleotide biosynthetic process	1.44E-03
63	GO:0046653: tetrahydrofolate metabolic process	1.44E-03
64	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.44E-03
65	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.44E-03
66	GO:0010021: amylopectin biosynthetic process	1.92E-03
67	GO:0010037: response to carbon dioxide	1.92E-03
68	GO:0015976: carbon utilization	1.92E-03
69	GO:0071486: cellular response to high light intensity	1.92E-03
70	GO:0009765: photosynthesis, light harvesting	1.92E-03
71	GO:0015994: chlorophyll metabolic process	1.92E-03
72	GO:0072488: ammonium transmembrane transport	1.92E-03
73	GO:0010107: potassium ion import	1.92E-03
74	GO:2000122: negative regulation of stomatal complex development	1.92E-03
75	GO:0006546: glycine catabolic process	1.92E-03
76	GO:0098719: sodium ion import across plasma membrane	2.46E-03
77	GO:0006564: L-serine biosynthetic process	2.46E-03
78	GO:0043097: pyrimidine nucleoside salvage	2.46E-03
79	GO:0010236: plastoquinone biosynthetic process	2.46E-03
80	GO:0006097: glyoxylate cycle	2.46E-03
81	GO:0006465: signal peptide processing	2.46E-03
82	GO:0071493: cellular response to UV-B	2.46E-03
83	GO:0009958: positive gravitropism	2.58E-03
84	GO:0006206: pyrimidine nucleobase metabolic process	3.03E-03
85	GO:0009643: photosynthetic acclimation	3.03E-03
86	GO:0050665: hydrogen peroxide biosynthetic process	3.03E-03
87	GO:0042549: photosystem II stabilization	3.03E-03
88	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.03E-03
89	GO:0060918: auxin transport	3.03E-03
90	GO:1902456: regulation of stomatal opening	3.03E-03
91	GO:0010190: cytochrome b6f complex assembly	3.03E-03
92	GO:0010189: vitamin E biosynthetic process	3.65E-03
93	GO:0071333: cellular response to glucose stimulus	3.65E-03
94	GO:0009645: response to low light intensity stimulus	4.30E-03
95	GO:0008272: sulfate transport	4.30E-03
96	GO:0009769: photosynthesis, light harvesting in photosystem II	4.30E-03
97	GO:1900056: negative regulation of leaf senescence	4.30E-03
98	GO:0009058: biosynthetic process	4.68E-03
99	GO:0010078: maintenance of root meristem identity	4.99E-03
100	GO:0070413: trehalose metabolism in response to stress	4.99E-03
101	GO:0009704: de-etiolation	4.99E-03
102	GO:0050821: protein stabilization	4.99E-03
103	GO:0055075: potassium ion homeostasis	4.99E-03
104	GO:0052543: callose deposition in cell wall	4.99E-03
105	GO:0016559: peroxisome fission	4.99E-03
106	GO:0008610: lipid biosynthetic process	4.99E-03
107	GO:0009642: response to light intensity	4.99E-03
108	GO:0010204: defense response signaling pathway, resistance gene-independent	5.72E-03
109	GO:0043562: cellular response to nitrogen levels	5.72E-03
110	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.72E-03
111	GO:0071482: cellular response to light stimulus	5.72E-03
112	GO:0019430: removal of superoxide radicals	5.72E-03
113	GO:0019432: triglyceride biosynthetic process	6.48E-03
114	GO:0006783: heme biosynthetic process	6.48E-03
115	GO:0009821: alkaloid biosynthetic process	6.48E-03
116	GO:0048527: lateral root development	6.92E-03
117	GO:0010380: regulation of chlorophyll biosynthetic process	7.28E-03
118	GO:0051453: regulation of intracellular pH	7.28E-03
119	GO:0006779: porphyrin-containing compound biosynthetic process	7.28E-03
120	GO:0009853: photorespiration	7.59E-03
121	GO:0009641: shade avoidance	8.11E-03
122	GO:0006782: protoporphyrinogen IX biosynthetic process	8.11E-03
123	GO:0006879: cellular iron ion homeostasis	8.97E-03
124	GO:0018119: peptidyl-cysteine S-nitrosylation	8.97E-03
125	GO:0009684: indoleacetic acid biosynthetic process	8.97E-03
126	GO:0072593: reactive oxygen species metabolic process	8.97E-03
127	GO:0043085: positive regulation of catalytic activity	8.97E-03
128	GO:0006631: fatty acid metabolic process	9.03E-03
129	GO:0005975: carbohydrate metabolic process	9.80E-03
130	GO:0016024: CDP-diacylglycerol biosynthetic process	9.88E-03
131	GO:0008361: regulation of cell size	9.88E-03
132	GO:0002213: defense response to insect	9.88E-03
133	GO:0006108: malate metabolic process	1.08E-02
134	GO:0009767: photosynthetic electron transport chain	1.08E-02
135	GO:0010588: cotyledon vascular tissue pattern formation	1.08E-02
136	GO:0030048: actin filament-based movement	1.08E-02
137	GO:0019253: reductive pentose-phosphate cycle	1.18E-02
138	GO:0010223: secondary shoot formation	1.18E-02
139	GO:0010540: basipetal auxin transport	1.18E-02
140	GO:0010020: chloroplast fission	1.18E-02
141	GO:0009735: response to cytokinin	1.29E-02
142	GO:0042742: defense response to bacterium	1.39E-02
143	GO:0005992: trehalose biosynthetic process	1.48E-02
144	GO:0006096: glycolytic process	1.57E-02
145	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.58E-02
146	GO:0009695: jasmonic acid biosynthetic process	1.59E-02
147	GO:0007017: microtubule-based process	1.59E-02
148	GO:0016114: terpenoid biosynthetic process	1.70E-02
149	GO:0003333: amino acid transmembrane transport	1.70E-02
150	GO:0019915: lipid storage	1.70E-02
151	GO:0009269: response to desiccation	1.70E-02
152	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.81E-02
153	GO:0030433: ubiquitin-dependent ERAD pathway	1.81E-02
154	GO:0019748: secondary metabolic process	1.81E-02
155	GO:0016226: iron-sulfur cluster assembly	1.81E-02
156	GO:0009624: response to nematode	1.89E-02
157	GO:0071215: cellular response to abscisic acid stimulus	1.93E-02
158	GO:0048443: stamen development	2.05E-02
159	GO:0016117: carotenoid biosynthetic process	2.17E-02
160	GO:0042335: cuticle development	2.29E-02
161	GO:0080022: primary root development	2.29E-02
162	GO:0010087: phloem or xylem histogenesis	2.29E-02
163	GO:0042631: cellular response to water deprivation	2.29E-02
164	GO:0009409: response to cold	2.32E-02
165	GO:0010154: fruit development	2.42E-02
166	GO:0006662: glycerol ether metabolic process	2.42E-02
167	GO:0006885: regulation of pH	2.42E-02
168	GO:0006520: cellular amino acid metabolic process	2.42E-02
169	GO:0071472: cellular response to salt stress	2.42E-02
170	GO:0006814: sodium ion transport	2.54E-02
171	GO:0048825: cotyledon development	2.67E-02
172	GO:0009851: auxin biosynthetic process	2.67E-02
173	GO:0009791: post-embryonic development	2.67E-02
174	GO:0032502: developmental process	2.94E-02
175	GO:0009630: gravitropism	2.94E-02
176	GO:0010090: trichome morphogenesis	3.08E-02
177	GO:1901657: glycosyl compound metabolic process	3.08E-02
178	GO:0009567: double fertilization forming a zygote and endosperm	3.22E-02
179	GO:0009639: response to red or far red light	3.22E-02
180	GO:0010150: leaf senescence	3.27E-02
181	GO:0051607: defense response to virus	3.50E-02
182	GO:0010027: thylakoid membrane organization	3.65E-02
183	GO:0042128: nitrate assimilation	3.95E-02
184	GO:0006974: cellular response to DNA damage stimulus	3.95E-02
185	GO:0016049: cell growth	4.25E-02
186	GO:0016311: dephosphorylation	4.25E-02
187	GO:0009817: defense response to fungus, incompatible interaction	4.41E-02
188	GO:0009910: negative regulation of flower development	4.88E-02
189	GO:0010119: regulation of stomatal movement	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
2	GO:0008974: phosphoribulokinase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0008465: glycerate dehydrogenase activity	0.00E+00
6	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
7	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
8	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
9	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
10	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
11	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
12	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
13	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
14	GO:0009011: starch synthase activity	3.62E-07
15	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.29E-05
16	GO:0031409: pigment binding	8.19E-05
17	GO:0004332: fructose-bisphosphate aldolase activity	1.22E-04
18	GO:0004328: formamidase activity	2.82E-04
19	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.82E-04
20	GO:0005344: oxygen transporter activity	2.82E-04
21	GO:0035671: enone reductase activity	2.82E-04
22	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.82E-04
23	GO:0016168: chlorophyll binding	6.00E-04
24	GO:0019172: glyoxalase III activity	6.19E-04
25	GO:0019156: isoamylase activity	6.19E-04
26	GO:0008883: glutamyl-tRNA reductase activity	6.19E-04
27	GO:0047746: chlorophyllase activity	6.19E-04
28	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	6.19E-04
29	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.19E-04
30	GO:0004617: phosphoglycerate dehydrogenase activity	6.19E-04
31	GO:0004047: aminomethyltransferase activity	6.19E-04
32	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	6.19E-04
33	GO:0033201: alpha-1,4-glucan synthase activity	6.19E-04
34	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	6.19E-04
35	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.19E-04
36	GO:0015386: potassium:proton antiporter activity	6.54E-04
37	GO:0016491: oxidoreductase activity	7.50E-04
38	GO:0004751: ribose-5-phosphate isomerase activity	1.00E-03
39	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.00E-03
40	GO:0070402: NADPH binding	1.00E-03
41	GO:0008864: formyltetrahydrofolate deformylase activity	1.00E-03
42	GO:0004373: glycogen (starch) synthase activity	1.00E-03
43	GO:0050734: hydroxycinnamoyltransferase activity	1.00E-03
44	GO:0022890: inorganic cation transmembrane transporter activity	1.44E-03
45	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.44E-03
46	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.44E-03
47	GO:0016851: magnesium chelatase activity	1.44E-03
48	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.44E-03
49	GO:0001872: (1->3)-beta-D-glucan binding	1.44E-03
50	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.44E-03
51	GO:0042802: identical protein binding	1.83E-03
52	GO:0008891: glycolate oxidase activity	1.92E-03
53	GO:0004045: aminoacyl-tRNA hydrolase activity	1.92E-03
54	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	2.46E-03
55	GO:0016846: carbon-sulfur lyase activity	2.46E-03
56	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.46E-03
57	GO:0004556: alpha-amylase activity	3.03E-03
58	GO:0004462: lactoylglutathione lyase activity	3.03E-03
59	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.03E-03
60	GO:0004784: superoxide dismutase activity	3.03E-03
61	GO:0015081: sodium ion transmembrane transporter activity	3.03E-03
62	GO:0016615: malate dehydrogenase activity	3.03E-03
63	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.03E-03
64	GO:0008519: ammonium transmembrane transporter activity	3.03E-03
65	GO:2001070: starch binding	3.03E-03
66	GO:0048038: quinone binding	3.18E-03
67	GO:0030060: L-malate dehydrogenase activity	3.65E-03
68	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.65E-03
69	GO:0004849: uridine kinase activity	3.65E-03
70	GO:0016791: phosphatase activity	3.85E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	4.99E-03
72	GO:0008271: secondary active sulfate transmembrane transporter activity	5.72E-03
73	GO:0016844: strictosidine synthase activity	7.28E-03
74	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.28E-03
75	GO:0005381: iron ion transmembrane transporter activity	7.28E-03
76	GO:0015174: basic amino acid transmembrane transporter activity	7.28E-03
77	GO:0030234: enzyme regulator activity	8.11E-03
78	GO:0008047: enzyme activator activity	8.11E-03
79	GO:0047372: acylglycerol lipase activity	8.97E-03
80	GO:0004185: serine-type carboxypeptidase activity	9.80E-03
81	GO:0015116: sulfate transmembrane transporter activity	9.88E-03
82	GO:0010329: auxin efflux transmembrane transporter activity	1.08E-02
83	GO:0004022: alcohol dehydrogenase (NAD) activity	1.08E-02
84	GO:0004089: carbonate dehydratase activity	1.08E-02
85	GO:0003725: double-stranded RNA binding	1.08E-02
86	GO:0004565: beta-galactosidase activity	1.08E-02
87	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.14E-02
88	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.18E-02
89	GO:0008266: poly(U) RNA binding	1.18E-02
90	GO:0003774: motor activity	1.18E-02
91	GO:0051287: NAD binding	1.19E-02
92	GO:0051536: iron-sulfur cluster binding	1.48E-02
93	GO:0005528: FK506 binding	1.48E-02
94	GO:0015079: potassium ion transmembrane transporter activity	1.59E-02
95	GO:0030570: pectate lyase activity	1.93E-02
96	GO:0003727: single-stranded RNA binding	2.05E-02
97	GO:0047134: protein-disulfide reductase activity	2.17E-02
98	GO:0010181: FMN binding	2.54E-02
99	GO:0004791: thioredoxin-disulfide reductase activity	2.54E-02
100	GO:0016853: isomerase activity	2.54E-02
101	GO:0015299: solute:proton antiporter activity	2.54E-02
102	GO:0015385: sodium:proton antiporter activity	3.08E-02
103	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.08E-02
104	GO:0005200: structural constituent of cytoskeleton	3.36E-02
105	GO:0008483: transaminase activity	3.36E-02
106	GO:0016597: amino acid binding	3.50E-02
107	GO:0003743: translation initiation factor activity	3.81E-02
108	GO:0030247: polysaccharide binding	4.10E-02
109	GO:0102483: scopolin beta-glucosidase activity	4.10E-02
110	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.14E-02
111	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.25E-02
112	GO:0008168: methyltransferase activity	4.84E-02
113	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	2.90E-33
4	GO:0009941: chloroplast envelope	2.24E-13
5	GO:0009570: chloroplast stroma	6.68E-12
6	GO:0009534: chloroplast thylakoid	9.78E-12
7	GO:0009535: chloroplast thylakoid membrane	1.33E-10
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.85E-07
9	GO:0009579: thylakoid	1.97E-07
10	GO:0010287: plastoglobule	6.12E-07
11	GO:0009522: photosystem I	1.74E-05
12	GO:0010319: stromule	3.86E-05
13	GO:0030076: light-harvesting complex	6.92E-05
14	GO:0009543: chloroplast thylakoid lumen	1.18E-04
15	GO:0031969: chloroplast membrane	1.42E-04
16	GO:0005787: signal peptidase complex	2.82E-04
17	GO:0009344: nitrite reductase complex [NAD(P)H]	2.82E-04
18	GO:0031361: integral component of thylakoid membrane	2.82E-04
19	GO:0009523: photosystem II	3.16E-04
20	GO:0048046: apoplast	4.23E-04
21	GO:0043036: starch grain	6.19E-04
22	GO:0033281: TAT protein transport complex	1.00E-03
23	GO:0010007: magnesium chelatase complex	1.00E-03
24	GO:0031977: thylakoid lumen	1.30E-03
25	GO:0030658: transport vesicle membrane	1.44E-03
26	GO:0009654: photosystem II oxygen evolving complex	1.44E-03
27	GO:0009517: PSII associated light-harvesting complex II	1.92E-03
28	GO:0019898: extrinsic component of membrane	2.97E-03
29	GO:0005773: vacuole	3.33E-03
30	GO:0009501: amyloplast	4.99E-03
31	GO:0005777: peroxisome	5.17E-03
32	GO:0045298: tubulin complex	6.48E-03
33	GO:0016459: myosin complex	8.11E-03
34	GO:0030095: chloroplast photosystem II	1.18E-02
35	GO:0043234: protein complex	1.38E-02
36	GO:0042651: thylakoid membrane	1.59E-02
37	GO:0005623: cell	2.43E-02
38	GO:0005618: cell wall	2.51E-02
39	GO:0030529: intracellular ribonucleoprotein complex	3.65E-02
40	GO:0016021: integral component of membrane	4.11E-02
41	GO:0005886: plasma membrane	4.26E-02
42	GO:0009707: chloroplast outer membrane	4.41E-02