Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G12230

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0061157: mRNA destabilization0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:2000469: negative regulation of peroxidase activity0.00E+00
5GO:0010081: regulation of inflorescence meristem growth0.00E+00
6GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
7GO:0019323: pentose catabolic process0.00E+00
8GO:0090706: specification of plant organ position0.00E+00
9GO:0017038: protein import0.00E+00
10GO:0090071: negative regulation of ribosome biogenesis0.00E+00
11GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
12GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
13GO:0080127: fruit septum development0.00E+00
14GO:0007638: mechanosensory behavior0.00E+00
15GO:0009733: response to auxin1.86E-09
16GO:0009734: auxin-activated signaling pathway6.33E-08
17GO:0046620: regulation of organ growth3.10E-06
18GO:0040008: regulation of growth8.38E-06
19GO:0015995: chlorophyll biosynthetic process1.81E-04
20GO:1900865: chloroplast RNA modification2.38E-04
21GO:0048829: root cap development2.97E-04
22GO:0005983: starch catabolic process4.37E-04
23GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.62E-04
24GO:0016123: xanthophyll biosynthetic process5.00E-04
25GO:2000012: regulation of auxin polar transport5.20E-04
26GO:0009926: auxin polar transport5.68E-04
27GO:0009828: plant-type cell wall loosening6.46E-04
28GO:0016554: cytidine to uridine editing6.92E-04
29GO:0042759: long-chain fatty acid biosynthetic process8.71E-04
30GO:2000021: regulation of ion homeostasis8.71E-04
31GO:0051247: positive regulation of protein metabolic process8.71E-04
32GO:1902458: positive regulation of stomatal opening8.71E-04
33GO:0015904: tetracycline transport8.71E-04
34GO:2000905: negative regulation of starch metabolic process8.71E-04
35GO:0010450: inflorescence meristem growth8.71E-04
36GO:0000025: maltose catabolic process8.71E-04
37GO:0070509: calcium ion import8.71E-04
38GO:0044262: cellular carbohydrate metabolic process8.71E-04
39GO:0030198: extracellular matrix organization8.71E-04
40GO:0006438: valyl-tRNA aminoacylation8.71E-04
41GO:0043266: regulation of potassium ion transport8.71E-04
42GO:0010063: positive regulation of trichoblast fate specification8.71E-04
43GO:0010480: microsporocyte differentiation8.71E-04
44GO:0010080: regulation of floral meristem growth8.71E-04
45GO:0046520: sphingoid biosynthetic process8.71E-04
46GO:0030488: tRNA methylation9.12E-04
47GO:0048437: floral organ development1.16E-03
48GO:0030307: positive regulation of cell growth1.16E-03
49GO:0001736: establishment of planar polarity1.89E-03
50GO:0080009: mRNA methylation1.89E-03
51GO:0009786: regulation of asymmetric cell division1.89E-03
52GO:0031648: protein destabilization1.89E-03
53GO:0001682: tRNA 5'-leader removal1.89E-03
54GO:1903426: regulation of reactive oxygen species biosynthetic process1.89E-03
55GO:0006568: tryptophan metabolic process1.89E-03
56GO:2000123: positive regulation of stomatal complex development1.89E-03
57GO:0010024: phytochromobilin biosynthetic process1.89E-03
58GO:0010275: NAD(P)H dehydrogenase complex assembly1.89E-03
59GO:1900871: chloroplast mRNA modification1.89E-03
60GO:0048255: mRNA stabilization1.89E-03
61GO:0061062: regulation of nematode larval development1.89E-03
62GO:0018026: peptidyl-lysine monomethylation1.89E-03
63GO:1900033: negative regulation of trichome patterning1.89E-03
64GO:0000902: cell morphogenesis2.13E-03
65GO:0048507: meristem development2.13E-03
66GO:0045892: negative regulation of transcription, DNA-templated2.22E-03
67GO:0010305: leaf vascular tissue pattern formation2.26E-03
68GO:0010182: sugar mediated signaling pathway2.26E-03
69GO:0009958: positive gravitropism2.26E-03
70GO:0006631: fatty acid metabolic process2.40E-03
71GO:0009638: phototropism2.52E-03
72GO:0006779: porphyrin-containing compound biosynthetic process2.52E-03
73GO:0009641: shade avoidance2.96E-03
74GO:0006949: syncytium formation2.96E-03
75GO:0006782: protoporphyrinogen IX biosynthetic process2.96E-03
76GO:0071398: cellular response to fatty acid3.13E-03
77GO:0045165: cell fate commitment3.13E-03
78GO:0090506: axillary shoot meristem initiation3.13E-03
79GO:0033591: response to L-ascorbic acid3.13E-03
80GO:1902448: positive regulation of shade avoidance3.13E-03
81GO:0048586: regulation of long-day photoperiodism, flowering3.13E-03
82GO:0080055: low-affinity nitrate transport3.13E-03
83GO:0010022: meristem determinacy3.13E-03
84GO:0009664: plant-type cell wall organization3.88E-03
85GO:0045037: protein import into chloroplast stroma3.93E-03
86GO:0010582: floral meristem determinacy3.93E-03
87GO:0009725: response to hormone4.48E-03
88GO:0010588: cotyledon vascular tissue pattern formation4.48E-03
89GO:0010628: positive regulation of gene expression4.48E-03
90GO:0010102: lateral root morphogenesis4.48E-03
91GO:1990019: protein storage vacuole organization4.57E-03
92GO:0016556: mRNA modification4.57E-03
93GO:0010371: regulation of gibberellin biosynthetic process4.57E-03
94GO:0010071: root meristem specification4.57E-03
95GO:0051513: regulation of monopolar cell growth4.57E-03
96GO:0007231: osmosensory signaling pathway4.57E-03
97GO:0009102: biotin biosynthetic process4.57E-03
98GO:0051639: actin filament network formation4.57E-03
99GO:0009052: pentose-phosphate shunt, non-oxidative branch4.57E-03
100GO:0046739: transport of virus in multicellular host4.57E-03
101GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.57E-03
102GO:0010027: thylakoid membrane organization4.77E-03
103GO:0010207: photosystem II assembly5.07E-03
104GO:0070588: calcium ion transmembrane transport5.69E-03
105GO:0048629: trichome patterning6.18E-03
106GO:0010109: regulation of photosynthesis6.18E-03
107GO:0051764: actin crosslink formation6.18E-03
108GO:0009765: photosynthesis, light harvesting6.18E-03
109GO:2000306: positive regulation of photomorphogenesis6.18E-03
110GO:0033500: carbohydrate homeostasis6.18E-03
111GO:2000038: regulation of stomatal complex development6.18E-03
112GO:0022622: root system development6.18E-03
113GO:0008295: spermidine biosynthetic process6.18E-03
114GO:0010025: wax biosynthetic process6.36E-03
115GO:0051017: actin filament bundle assembly7.07E-03
116GO:0009624: response to nematode7.43E-03
117GO:0048497: maintenance of floral organ identity7.97E-03
118GO:0045487: gibberellin catabolic process7.97E-03
119GO:0009107: lipoate biosynthetic process7.97E-03
120GO:1902183: regulation of shoot apical meristem development7.97E-03
121GO:0010158: abaxial cell fate specification7.97E-03
122GO:0000304: response to singlet oxygen7.97E-03
123GO:0080110: sporopollenin biosynthetic process7.97E-03
124GO:0010375: stomatal complex patterning7.97E-03
125GO:0045038: protein import into chloroplast thylakoid membrane7.97E-03
126GO:0016120: carotene biosynthetic process7.97E-03
127GO:0009793: embryo development ending in seed dormancy8.20E-03
128GO:0010431: seed maturation8.61E-03
129GO:0006865: amino acid transport8.61E-03
130GO:0003333: amino acid transmembrane transport8.61E-03
131GO:0006351: transcription, DNA-templated8.97E-03
132GO:0071555: cell wall organization9.52E-03
133GO:0009826: unidimensional cell growth9.67E-03
134GO:0018258: protein O-linked glycosylation via hydroxyproline9.92E-03
135GO:0010405: arabinogalactan protein metabolic process9.92E-03
136GO:0009959: negative gravitropism9.92E-03
137GO:0009913: epidermal cell differentiation9.92E-03
138GO:0006655: phosphatidylglycerol biosynthetic process9.92E-03
139GO:1902456: regulation of stomatal opening9.92E-03
140GO:0042793: transcription from plastid promoter9.92E-03
141GO:0033365: protein localization to organelle9.92E-03
142GO:0003006: developmental process involved in reproduction9.92E-03
143GO:0009658: chloroplast organization1.03E-02
144GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.03E-02
145GO:0009686: gibberellin biosynthetic process1.03E-02
146GO:0007275: multicellular organism development1.10E-02
147GO:0009416: response to light stimulus1.18E-02
148GO:2000033: regulation of seed dormancy process1.20E-02
149GO:0010019: chloroplast-nucleus signaling pathway1.20E-02
150GO:0080086: stamen filament development1.20E-02
151GO:0042372: phylloquinone biosynthetic process1.20E-02
152GO:0006458: 'de novo' protein folding1.20E-02
153GO:0017148: negative regulation of translation1.20E-02
154GO:0042026: protein refolding1.20E-02
155GO:0008033: tRNA processing1.32E-02
156GO:0048366: leaf development1.37E-02
157GO:0015693: magnesium ion transport1.43E-02
158GO:0032880: regulation of protein localization1.43E-02
159GO:0010161: red light signaling pathway1.43E-02
160GO:0048528: post-embryonic root development1.43E-02
161GO:0010098: suspensor development1.43E-02
162GO:0000122: negative regulation of transcription from RNA polymerase II promoter1.43E-02
163GO:0010444: guard mother cell differentiation1.43E-02
164GO:0009646: response to absence of light1.54E-02
165GO:0048544: recognition of pollen1.54E-02
166GO:2000070: regulation of response to water deprivation1.66E-02
167GO:0000105: histidine biosynthetic process1.66E-02
168GO:0006605: protein targeting1.66E-02
169GO:0071554: cell wall organization or biogenesis1.77E-02
170GO:0032502: developmental process1.89E-02
171GO:0010583: response to cyclopentenone1.89E-02
172GO:0010093: specification of floral organ identity1.92E-02
173GO:0010099: regulation of photomorphogenesis1.92E-02
174GO:0015996: chlorophyll catabolic process1.92E-02
175GO:0007186: G-protein coupled receptor signaling pathway1.92E-02
176GO:0010100: negative regulation of photomorphogenesis1.92E-02
177GO:0006526: arginine biosynthetic process1.92E-02
178GO:0010497: plasmodesmata-mediated intercellular transport1.92E-02
179GO:0009657: plastid organization1.92E-02
180GO:0032544: plastid translation1.92E-02
181GO:0009909: regulation of flower development2.11E-02
182GO:0006464: cellular protein modification process2.15E-02
183GO:0000373: Group II intron splicing2.18E-02
184GO:0051865: protein autoubiquitination2.18E-02
185GO:2000024: regulation of leaf development2.18E-02
186GO:0006783: heme biosynthetic process2.18E-02
187GO:0005982: starch metabolic process2.46E-02
188GO:0042761: very long-chain fatty acid biosynthetic process2.46E-02
189GO:0009098: leucine biosynthetic process2.46E-02
190GO:0009740: gibberellic acid mediated signaling pathway2.68E-02
191GO:0010029: regulation of seed germination2.71E-02
192GO:0009299: mRNA transcription2.74E-02
193GO:0010162: seed dormancy process2.74E-02
194GO:0016042: lipid catabolic process2.78E-02
195GO:0018119: peptidyl-cysteine S-nitrosylation3.04E-02
196GO:0006415: translational termination3.04E-02
197GO:0048229: gametophyte development3.04E-02
198GO:0048765: root hair cell differentiation3.04E-02
199GO:0006816: calcium ion transport3.04E-02
200GO:0009073: aromatic amino acid family biosynthetic process3.04E-02
201GO:0009773: photosynthetic electron transport in photosystem I3.04E-02
202GO:0008285: negative regulation of cell proliferation3.04E-02
203GO:0009750: response to fructose3.04E-02
204GO:0009742: brassinosteroid mediated signaling pathway3.11E-02
205GO:0012501: programmed cell death3.35E-02
206GO:0016024: CDP-diacylglycerol biosynthetic process3.35E-02
207GO:0010311: lateral root formation3.52E-02
208GO:0000160: phosphorelay signal transduction system3.52E-02
209GO:0009813: flavonoid biosynthetic process3.52E-02
210GO:0009691: cytokinin biosynthetic process3.67E-02
211GO:0050826: response to freezing3.67E-02
212GO:0010075: regulation of meristem growth3.67E-02
213GO:0006006: glucose metabolic process3.67E-02
214GO:0009785: blue light signaling pathway3.67E-02
215GO:0006355: regulation of transcription, DNA-templated3.84E-02
216GO:0048527: lateral root development3.87E-02
217GO:0010223: secondary shoot formation4.00E-02
218GO:0009934: regulation of meristem structural organization4.00E-02
219GO:0048467: gynoecium development4.00E-02
220GO:0010020: chloroplast fission4.00E-02
221GO:0009933: meristem structural organization4.00E-02
222GO:0090351: seedling development4.34E-02
223GO:0010030: positive regulation of seed germination4.34E-02
224GO:0009790: embryo development4.63E-02
225GO:0006833: water transport4.69E-02
226GO:0000162: tryptophan biosynthetic process4.69E-02
RankGO TermAdjusted P value
1GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor0.00E+00
2GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
3GO:0005201: extracellular matrix structural constituent0.00E+00
4GO:0004076: biotin synthase activity0.00E+00
5GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity0.00E+00
6GO:0071633: dihydroceramidase activity0.00E+00
7GO:0019203: carbohydrate phosphatase activity0.00E+00
8GO:0047661: amino-acid racemase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
11GO:0017118: lipoyltransferase activity3.15E-05
12GO:0005504: fatty acid binding9.94E-05
13GO:0005528: FK506 binding9.94E-05
14GO:0043023: ribosomal large subunit binding2.03E-04
15GO:0001872: (1->3)-beta-D-glucan binding2.03E-04
16GO:0045430: chalcone isomerase activity3.36E-04
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.50E-04
18GO:0052381: tRNA dimethylallyltransferase activity8.71E-04
19GO:0010313: phytochrome binding8.71E-04
20GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity8.71E-04
21GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity8.71E-04
22GO:0000170: sphingosine hydroxylase activity8.71E-04
23GO:0050139: nicotinate-N-glucosyltransferase activity8.71E-04
24GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity8.71E-04
25GO:0047259: glucomannan 4-beta-mannosyltransferase activity8.71E-04
26GO:0005227: calcium activated cation channel activity8.71E-04
27GO:0004425: indole-3-glycerol-phosphate synthase activity8.71E-04
28GO:0004134: 4-alpha-glucanotransferase activity8.71E-04
29GO:0009374: biotin binding8.71E-04
30GO:0050308: sugar-phosphatase activity8.71E-04
31GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.71E-04
32GO:0004832: valine-tRNA ligase activity8.71E-04
33GO:0003852: 2-isopropylmalate synthase activity1.89E-03
34GO:0045543: gibberellin 2-beta-dioxygenase activity1.89E-03
35GO:0043425: bHLH transcription factor binding1.89E-03
36GO:0016415: octanoyltransferase activity1.89E-03
37GO:0004766: spermidine synthase activity1.89E-03
38GO:0004750: ribulose-phosphate 3-epimerase activity1.89E-03
39GO:0008805: carbon-monoxide oxygenase activity1.89E-03
40GO:0042284: sphingolipid delta-4 desaturase activity1.89E-03
41GO:0008493: tetracycline transporter activity1.89E-03
42GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.89E-03
43GO:0008138: protein tyrosine/serine/threonine phosphatase activity2.13E-03
44GO:0016805: dipeptidase activity3.13E-03
45GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor3.13E-03
46GO:0080054: low-affinity nitrate transmembrane transporter activity3.13E-03
47GO:0015462: ATPase-coupled protein transmembrane transporter activity3.13E-03
48GO:0004180: carboxypeptidase activity3.13E-03
49GO:0003913: DNA photolyase activity3.13E-03
50GO:0031072: heat shock protein binding4.48E-03
51GO:0005262: calcium channel activity4.48E-03
52GO:0016851: magnesium chelatase activity4.57E-03
53GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity4.57E-03
54GO:0016149: translation release factor activity, codon specific4.57E-03
55GO:0030247: polysaccharide binding5.89E-03
56GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity6.18E-03
57GO:0016279: protein-lysine N-methyltransferase activity6.18E-03
58GO:0010011: auxin binding6.18E-03
59GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed6.18E-03
60GO:0010328: auxin influx transmembrane transporter activity6.18E-03
61GO:0019199: transmembrane receptor protein kinase activity6.18E-03
62GO:0005345: purine nucleobase transmembrane transporter activity7.81E-03
63GO:0003989: acetyl-CoA carboxylase activity7.97E-03
64GO:0008725: DNA-3-methyladenine glycosylase activity7.97E-03
65GO:0003723: RNA binding8.33E-03
66GO:0033612: receptor serine/threonine kinase binding8.61E-03
67GO:2001070: starch binding9.92E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity9.92E-03
69GO:0004526: ribonuclease P activity9.92E-03
70GO:0004709: MAP kinase kinase kinase activity9.92E-03
71GO:0016208: AMP binding9.92E-03
72GO:0004130: cytochrome-c peroxidase activity9.92E-03
73GO:0016688: L-ascorbate peroxidase activity9.92E-03
74GO:0030570: pectate lyase activity1.03E-02
75GO:0003727: single-stranded RNA binding1.12E-02
76GO:0009055: electron carrier activity1.17E-02
77GO:0051920: peroxiredoxin activity1.20E-02
78GO:0051753: mannan synthase activity1.20E-02
79GO:0016832: aldehyde-lyase activity1.20E-02
80GO:0004519: endonuclease activity1.20E-02
81GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.20E-02
82GO:0043621: protein self-association1.40E-02
83GO:0001085: RNA polymerase II transcription factor binding1.43E-02
84GO:0009881: photoreceptor activity1.43E-02
85GO:0016209: antioxidant activity1.66E-02
86GO:0008173: RNA methyltransferase activity1.92E-02
87GO:0046983: protein dimerization activity1.94E-02
88GO:0051015: actin filament binding2.01E-02
89GO:0000156: phosphorelay response regulator activity2.01E-02
90GO:0015171: amino acid transmembrane transporter activity2.11E-02
91GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.12E-02
92GO:0005515: protein binding2.17E-02
93GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity2.18E-02
94GO:0003747: translation release factor activity2.18E-02
95GO:0004871: signal transducer activity2.21E-02
96GO:0016413: O-acetyltransferase activity2.42E-02
97GO:0004805: trehalose-phosphatase activity2.74E-02
98GO:0051082: unfolded protein binding2.89E-02
99GO:0004721: phosphoprotein phosphatase activity3.02E-02
100GO:0044183: protein binding involved in protein folding3.04E-02
101GO:0047372: acylglycerol lipase activity3.04E-02
102GO:0000976: transcription regulatory region sequence-specific DNA binding3.35E-02
103GO:0015095: magnesium ion transmembrane transporter activity3.67E-02
104GO:0003725: double-stranded RNA binding3.67E-02
105GO:0004565: beta-galactosidase activity3.67E-02
106GO:0015266: protein channel activity3.67E-02
107GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.87E-02
108GO:0008266: poly(U) RNA binding4.00E-02
109GO:0008083: growth factor activity4.00E-02
110GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.00E-02
111GO:0016829: lyase activity4.22E-02
112GO:0004190: aspartic-type endopeptidase activity4.34E-02
113GO:0003712: transcription cofactor activity4.34E-02
114GO:0008146: sulfotransferase activity4.34E-02
115GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.49E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.46E-12
2GO:0009570: chloroplast stroma8.75E-09
3GO:0009534: chloroplast thylakoid1.49E-07
4GO:0009941: chloroplast envelope1.07E-06
5GO:0009543: chloroplast thylakoid lumen1.46E-04
6GO:0009508: plastid chromosome5.20E-04
7GO:0046658: anchored component of plasma membrane6.32E-04
8GO:0009579: thylakoid9.09E-04
9GO:0009986: cell surface1.16E-03
10GO:0005886: plasma membrane1.26E-03
11GO:0009535: chloroplast thylakoid membrane1.52E-03
12GO:0000427: plastid-encoded plastid RNA polymerase complex1.89E-03
13GO:0031225: anchored component of membrane1.90E-03
14GO:0031977: thylakoid lumen2.40E-03
15GO:0009317: acetyl-CoA carboxylase complex3.13E-03
16GO:0009528: plastid inner membrane3.13E-03
17GO:0019897: extrinsic component of plasma membrane3.13E-03
18GO:0010007: magnesium chelatase complex3.13E-03
19GO:0030139: endocytic vesicle3.13E-03
20GO:0010319: stromule4.11E-03
21GO:0009295: nucleoid4.11E-03
22GO:0032585: multivesicular body membrane4.57E-03
23GO:0032432: actin filament bundle4.57E-03
24GO:0009527: plastid outer membrane6.18E-03
25GO:0009654: photosystem II oxygen evolving complex7.81E-03
26GO:0015629: actin cytoskeleton1.03E-02
27GO:0009533: chloroplast stromal thylakoid1.43E-02
28GO:0031969: chloroplast membrane1.50E-02
29GO:0019898: extrinsic component of membrane1.65E-02
30GO:0009501: amyloplast1.66E-02
31GO:0000418: DNA-directed RNA polymerase IV complex2.74E-02
32GO:0005667: transcription factor complex2.87E-02
33GO:0005884: actin filament3.04E-02
34GO:0090404: pollen tube tip3.04E-02
35GO:0000311: plastid large ribosomal subunit3.35E-02
36GO:0005578: proteinaceous extracellular matrix3.67E-02
37GO:0030095: chloroplast photosystem II4.00E-02
38GO:0043234: protein complex4.69E-02
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Gene type



Gene DE type