Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G12200

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
2GO:1900067: regulation of cellular response to alkaline pH0.00E+00
3GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
4GO:0015690: aluminum cation transport0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
7GO:0002376: immune system process0.00E+00
8GO:0009312: oligosaccharide biosynthetic process0.00E+00
9GO:0046865: terpenoid transport0.00E+00
10GO:0010324: membrane invagination0.00E+00
11GO:0071327: cellular response to trehalose stimulus0.00E+00
12GO:0010055: atrichoblast differentiation0.00E+00
13GO:1902001: fatty acid transmembrane transport0.00E+00
14GO:0006979: response to oxidative stress7.89E-08
15GO:0010112: regulation of systemic acquired resistance5.40E-07
16GO:0060548: negative regulation of cell death8.52E-07
17GO:0006952: defense response3.94E-06
18GO:0009753: response to jasmonic acid6.63E-06
19GO:0019725: cellular homeostasis6.76E-06
20GO:0010150: leaf senescence1.07E-05
21GO:0010200: response to chitin1.14E-05
22GO:2000022: regulation of jasmonic acid mediated signaling pathway1.67E-05
23GO:0009625: response to insect2.00E-05
24GO:0010186: positive regulation of cellular defense response2.36E-05
25GO:0009611: response to wounding4.64E-05
26GO:1903507: negative regulation of nucleic acid-templated transcription6.43E-05
27GO:0031347: regulation of defense response7.41E-05
28GO:0009643: photosynthetic acclimation2.03E-04
29GO:0071456: cellular response to hypoxia2.82E-04
30GO:0015760: glucose-6-phosphate transport3.89E-04
31GO:0019567: arabinose biosynthetic process3.89E-04
32GO:0080173: male-female gamete recognition during double fertilization3.89E-04
33GO:0033306: phytol metabolic process3.89E-04
34GO:0009700: indole phytoalexin biosynthetic process3.89E-04
35GO:1901183: positive regulation of camalexin biosynthetic process3.89E-04
36GO:0009270: response to humidity3.89E-04
37GO:0034214: protein hexamerization3.89E-04
38GO:0050691: regulation of defense response to virus by host3.89E-04
39GO:0042759: long-chain fatty acid biosynthetic process3.89E-04
40GO:1990542: mitochondrial transmembrane transport3.89E-04
41GO:0032107: regulation of response to nutrient levels3.89E-04
42GO:0048508: embryonic meristem development3.89E-04
43GO:0051707: response to other organism4.20E-04
44GO:0042391: regulation of membrane potential4.39E-04
45GO:0030091: protein repair4.44E-04
46GO:0009646: response to absence of light5.32E-04
47GO:0010120: camalexin biosynthetic process5.43E-04
48GO:2000031: regulation of salicylic acid mediated signaling pathway5.43E-04
49GO:0010193: response to ozone6.34E-04
50GO:0006098: pentose-phosphate shunt6.50E-04
51GO:0007166: cell surface receptor signaling pathway6.97E-04
52GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.68E-04
53GO:0055088: lipid homeostasis8.44E-04
54GO:0019521: D-gluconate metabolic process8.44E-04
55GO:0015908: fatty acid transport8.44E-04
56GO:0010115: regulation of abscisic acid biosynthetic process8.44E-04
57GO:0044419: interspecies interaction between organisms8.44E-04
58GO:0009945: radial axis specification8.44E-04
59GO:0015712: hexose phosphate transport8.44E-04
60GO:0010271: regulation of chlorophyll catabolic process8.44E-04
61GO:0051258: protein polymerization8.44E-04
62GO:0071668: plant-type cell wall assembly8.44E-04
63GO:0009446: putrescine biosynthetic process8.44E-04
64GO:0015914: phospholipid transport8.44E-04
65GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.44E-04
66GO:0009838: abscission8.44E-04
67GO:0010618: aerenchyma formation8.44E-04
68GO:0006527: arginine catabolic process8.44E-04
69GO:0080181: lateral root branching8.44E-04
70GO:0009751: response to salicylic acid8.68E-04
71GO:0009626: plant-type hypersensitive response9.48E-04
72GO:0015695: organic cation transport1.37E-03
73GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.37E-03
74GO:0015714: phosphoenolpyruvate transport1.37E-03
75GO:0080168: abscisic acid transport1.37E-03
76GO:1900055: regulation of leaf senescence1.37E-03
77GO:0006954: inflammatory response1.37E-03
78GO:0034051: negative regulation of plant-type hypersensitive response1.37E-03
79GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.37E-03
80GO:1900140: regulation of seedling development1.37E-03
81GO:0080163: regulation of protein serine/threonine phosphatase activity1.37E-03
82GO:0035436: triose phosphate transmembrane transport1.37E-03
83GO:0045793: positive regulation of cell size1.37E-03
84GO:0015692: lead ion transport1.37E-03
85GO:0006468: protein phosphorylation1.46E-03
86GO:0009266: response to temperature stimulus1.50E-03
87GO:0080167: response to karrikin1.73E-03
88GO:0010731: protein glutathionylation1.97E-03
89GO:0015696: ammonium transport1.97E-03
90GO:0051289: protein homotetramerization1.97E-03
91GO:0046513: ceramide biosynthetic process1.97E-03
92GO:0046836: glycolipid transport1.97E-03
93GO:0010116: positive regulation of abscisic acid biosynthetic process1.97E-03
94GO:0048194: Golgi vesicle budding1.97E-03
95GO:2000377: regulation of reactive oxygen species metabolic process2.08E-03
96GO:0006897: endocytosis2.37E-03
97GO:0050832: defense response to fungus2.56E-03
98GO:0072488: ammonium transmembrane transport2.65E-03
99GO:0033358: UDP-L-arabinose biosynthetic process2.65E-03
100GO:0015713: phosphoglycerate transport2.65E-03
101GO:0008295: spermidine biosynthetic process2.65E-03
102GO:0080142: regulation of salicylic acid biosynthetic process2.65E-03
103GO:1901141: regulation of lignin biosynthetic process2.65E-03
104GO:0010109: regulation of photosynthesis2.65E-03
105GO:0045227: capsule polysaccharide biosynthetic process2.65E-03
106GO:0048638: regulation of developmental growth2.65E-03
107GO:0009652: thigmotropism2.65E-03
108GO:0009737: response to abscisic acid2.78E-03
109GO:0006012: galactose metabolic process3.01E-03
110GO:0010225: response to UV-C3.40E-03
111GO:0034052: positive regulation of plant-type hypersensitive response3.40E-03
112GO:0009164: nucleoside catabolic process3.40E-03
113GO:0042742: defense response to bacterium3.75E-03
114GO:0033365: protein localization to organelle4.20E-03
115GO:0006596: polyamine biosynthetic process4.20E-03
116GO:0009117: nucleotide metabolic process4.20E-03
117GO:0006574: valine catabolic process4.20E-03
118GO:0002238: response to molecule of fungal origin4.20E-03
119GO:0009759: indole glucosinolate biosynthetic process4.20E-03
120GO:0010942: positive regulation of cell death4.20E-03
121GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.20E-03
122GO:0010256: endomembrane system organization4.20E-03
123GO:0042372: phylloquinone biosynthetic process5.06E-03
124GO:0045926: negative regulation of growth5.06E-03
125GO:0009612: response to mechanical stimulus5.06E-03
126GO:0009094: L-phenylalanine biosynthetic process5.06E-03
127GO:0009942: longitudinal axis specification5.06E-03
128GO:0010310: regulation of hydrogen peroxide metabolic process5.06E-03
129GO:0071446: cellular response to salicylic acid stimulus5.98E-03
130GO:1900056: negative regulation of leaf senescence5.98E-03
131GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.98E-03
132GO:0050829: defense response to Gram-negative bacterium5.98E-03
133GO:1902074: response to salt5.98E-03
134GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.98E-03
135GO:0043090: amino acid import5.98E-03
136GO:0009787: regulation of abscisic acid-activated signaling pathway6.95E-03
137GO:0009819: drought recovery6.95E-03
138GO:0043068: positive regulation of programmed cell death6.95E-03
139GO:0010204: defense response signaling pathway, resistance gene-independent7.98E-03
140GO:0030968: endoplasmic reticulum unfolded protein response7.98E-03
141GO:0010208: pollen wall assembly7.98E-03
142GO:0009627: systemic acquired resistance8.26E-03
143GO:0006950: response to stress8.71E-03
144GO:0019432: triglyceride biosynthetic process9.05E-03
145GO:0046916: cellular transition metal ion homeostasis9.05E-03
146GO:0009835: fruit ripening9.05E-03
147GO:0009638: phototropism1.02E-02
148GO:0090332: stomatal closure1.02E-02
149GO:0048268: clathrin coat assembly1.02E-02
150GO:0010380: regulation of chlorophyll biosynthetic process1.02E-02
151GO:0010311: lateral root formation1.02E-02
152GO:1900426: positive regulation of defense response to bacterium1.02E-02
153GO:0009407: toxin catabolic process1.07E-02
154GO:0048527: lateral root development1.12E-02
155GO:0010119: regulation of stomatal movement1.12E-02
156GO:0019538: protein metabolic process1.14E-02
157GO:0009870: defense response signaling pathway, resistance gene-dependent1.14E-02
158GO:0006032: chitin catabolic process1.14E-02
159GO:0009867: jasmonic acid mediated signaling pathway1.23E-02
160GO:0019684: photosynthesis, light reaction1.26E-02
161GO:0072593: reactive oxygen species metabolic process1.26E-02
162GO:0048229: gametophyte development1.26E-02
163GO:0002213: defense response to insect1.39E-02
164GO:0010105: negative regulation of ethylene-activated signaling pathway1.39E-02
165GO:0000266: mitochondrial fission1.39E-02
166GO:0006887: exocytosis1.46E-02
167GO:0009785: blue light signaling pathway1.52E-02
168GO:0009617: response to bacterium1.52E-02
169GO:0002237: response to molecule of bacterial origin1.65E-02
170GO:0009636: response to toxic substance1.78E-02
171GO:0009225: nucleotide-sugar metabolic process1.79E-02
172GO:0080147: root hair cell development2.08E-02
173GO:0016998: cell wall macromolecule catabolic process2.39E-02
174GO:0009723: response to ethylene2.54E-02
175GO:0031348: negative regulation of defense response2.55E-02
176GO:0009693: ethylene biosynthetic process2.71E-02
177GO:0009624: response to nematode3.05E-02
178GO:0070417: cellular response to cold3.05E-02
179GO:0042631: cellular response to water deprivation3.22E-02
180GO:0000271: polysaccharide biosynthetic process3.22E-02
181GO:0000413: protein peptidyl-prolyl isomerization3.22E-02
182GO:0015979: photosynthesis3.26E-02
183GO:0045489: pectin biosynthetic process3.40E-02
184GO:0006520: cellular amino acid metabolic process3.40E-02
185GO:0009749: response to glucose3.76E-02
186GO:0016567: protein ubiquitination3.89E-02
187GO:0071554: cell wall organization or biogenesis3.95E-02
188GO:0002229: defense response to oomycetes3.95E-02
189GO:0000302: response to reactive oxygen species3.95E-02
190GO:0019761: glucosinolate biosynthetic process4.14E-02
191GO:0009630: gravitropism4.14E-02
192GO:0009790: embryo development4.44E-02
193GO:0009408: response to heat4.48E-02
194GO:0006904: vesicle docking involved in exocytosis4.72E-02
RankGO TermAdjusted P value
1GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
2GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
3GO:0030553: cGMP binding1.39E-04
4GO:0030552: cAMP binding1.39E-04
5GO:0003714: transcription corepressor activity1.89E-04
6GO:0005216: ion channel activity2.19E-04
7GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.74E-04
8GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.74E-04
9GO:0004012: phospholipid-translocating ATPase activity2.74E-04
10GO:0019707: protein-cysteine S-acyltransferase activity3.89E-04
11GO:2001147: camalexin binding3.89E-04
12GO:0008792: arginine decarboxylase activity3.89E-04
13GO:0015245: fatty acid transporter activity3.89E-04
14GO:2001227: quercitrin binding3.89E-04
15GO:0030551: cyclic nucleotide binding4.39E-04
16GO:0005249: voltage-gated potassium channel activity4.39E-04
17GO:0005544: calcium-dependent phospholipid binding4.44E-04
18GO:0004714: transmembrane receptor protein tyrosine kinase activity4.44E-04
19GO:0019901: protein kinase binding5.82E-04
20GO:0015152: glucose-6-phosphate transmembrane transporter activity8.44E-04
21GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity8.44E-04
22GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity8.44E-04
23GO:0048531: beta-1,3-galactosyltransferase activity8.44E-04
24GO:0004385: guanylate kinase activity8.44E-04
25GO:0050291: sphingosine N-acyltransferase activity8.44E-04
26GO:0047364: desulfoglucosinolate sulfotransferase activity8.44E-04
27GO:0004568: chitinase activity8.94E-04
28GO:0016301: kinase activity1.19E-03
29GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.33E-03
30GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.37E-03
31GO:0032403: protein complex binding1.37E-03
32GO:0071917: triose-phosphate transmembrane transporter activity1.37E-03
33GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.37E-03
34GO:0004324: ferredoxin-NADP+ reductase activity1.37E-03
35GO:0004674: protein serine/threonine kinase activity1.82E-03
36GO:0017077: oxidative phosphorylation uncoupler activity1.97E-03
37GO:0017089: glycolipid transporter activity1.97E-03
38GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.36E-03
39GO:0009916: alternative oxidase activity2.65E-03
40GO:0015120: phosphoglycerate transmembrane transporter activity2.65E-03
41GO:0050373: UDP-arabinose 4-epimerase activity2.65E-03
42GO:0047769: arogenate dehydratase activity2.65E-03
43GO:0004737: pyruvate decarboxylase activity2.65E-03
44GO:0004664: prephenate dehydratase activity2.65E-03
45GO:0051861: glycolipid binding2.65E-03
46GO:0005496: steroid binding3.40E-03
47GO:0047631: ADP-ribose diphosphatase activity3.40E-03
48GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.40E-03
49GO:0000210: NAD+ diphosphatase activity4.20E-03
50GO:0008519: ammonium transmembrane transporter activity4.20E-03
51GO:0030976: thiamine pyrophosphate binding4.20E-03
52GO:0043565: sequence-specific DNA binding4.84E-03
53GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides5.06E-03
54GO:0003950: NAD+ ADP-ribosyltransferase activity5.06E-03
55GO:0005261: cation channel activity5.06E-03
56GO:0003978: UDP-glucose 4-epimerase activity5.06E-03
57GO:0004144: diacylglycerol O-acyltransferase activity5.06E-03
58GO:0008113: peptide-methionine (S)-S-oxide reductase activity5.06E-03
59GO:0016831: carboxy-lyase activity5.98E-03
60GO:0043295: glutathione binding5.98E-03
61GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity6.57E-03
62GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity6.95E-03
63GO:0004034: aldose 1-epimerase activity6.95E-03
64GO:0004033: aldo-keto reductase (NADP) activity6.95E-03
65GO:0008375: acetylglucosaminyltransferase activity8.26E-03
66GO:0004806: triglyceride lipase activity8.71E-03
67GO:0071949: FAD binding9.05E-03
68GO:0005509: calcium ion binding9.47E-03
69GO:0005524: ATP binding1.01E-02
70GO:0047617: acyl-CoA hydrolase activity1.02E-02
71GO:0015020: glucuronosyltransferase activity1.14E-02
72GO:0004864: protein phosphatase inhibitor activity1.14E-02
73GO:0008171: O-methyltransferase activity1.14E-02
74GO:0005545: 1-phosphatidylinositol binding1.14E-02
75GO:0004364: glutathione transferase activity1.52E-02
76GO:0005315: inorganic phosphate transmembrane transporter activity1.52E-02
77GO:0008146: sulfotransferase activity1.79E-02
78GO:0004190: aspartic-type endopeptidase activity1.79E-02
79GO:0005516: calmodulin binding1.90E-02
80GO:0000287: magnesium ion binding2.06E-02
81GO:0004842: ubiquitin-protein transferase activity2.06E-02
82GO:0001046: core promoter sequence-specific DNA binding2.08E-02
83GO:0016757: transferase activity, transferring glycosyl groups2.15E-02
84GO:0016298: lipase activity2.22E-02
85GO:0004672: protein kinase activity2.31E-02
86GO:0033612: receptor serine/threonine kinase binding2.39E-02
87GO:0019706: protein-cysteine S-palmitoyltransferase activity2.39E-02
88GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.55E-02
89GO:0004497: monooxygenase activity2.77E-02
90GO:0004499: N,N-dimethylaniline monooxygenase activity2.88E-02
91GO:0005199: structural constituent of cell wall3.40E-02
92GO:0030276: clathrin binding3.40E-02
93GO:0016853: isomerase activity3.58E-02
94GO:0016758: transferase activity, transferring hexosyl groups3.71E-02
95GO:0004197: cysteine-type endopeptidase activity4.14E-02
96GO:0030170: pyridoxal phosphate binding4.23E-02
97GO:0008483: transaminase activity4.72E-02
98GO:0016597: amino acid binding4.92E-02
99GO:0016413: O-acetyltransferase activity4.92E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0005886: plasma membrane1.27E-08
3GO:0016021: integral component of membrane6.15E-07
4GO:0005901: caveola6.76E-06
5GO:0005794: Golgi apparatus5.86E-05
6GO:0000138: Golgi trans cisterna3.89E-04
7GO:0008287: protein serine/threonine phosphatase complex1.37E-03
8GO:0009530: primary cell wall1.37E-03
9GO:0070062: extracellular exosome1.97E-03
10GO:0005802: trans-Golgi network2.25E-03
11GO:0005905: clathrin-coated pit2.52E-03
12GO:0000813: ESCRT I complex3.40E-03
13GO:0000164: protein phosphatase type 1 complex3.40E-03
14GO:0016363: nuclear matrix5.06E-03
15GO:0030125: clathrin vesicle coat1.14E-02
16GO:0005795: Golgi stack1.79E-02
17GO:0005769: early endosome1.94E-02
18GO:0005887: integral component of plasma membrane2.03E-02
19GO:0070469: respiratory chain2.24E-02
20GO:0005741: mitochondrial outer membrane2.39E-02
21GO:0005789: endoplasmic reticulum membrane2.49E-02
22GO:0005768: endosome2.62E-02
23GO:0030136: clathrin-coated vesicle3.05E-02
24GO:0005777: peroxisome3.68E-02
25GO:0005743: mitochondrial inner membrane4.10E-02
26GO:0000145: exocyst4.14E-02
27GO:0032580: Golgi cisterna membrane4.53E-02
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Gene type



Gene DE type