co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000469: negative regulation of peroxidase activity	0.00E+00
2	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
3	GO:0017038: protein import	0.00E+00
4	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
8	GO:0045184: establishment of protein localization	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:0061157: mRNA destabilization	0.00E+00
11	GO:0009734: auxin-activated signaling pathway	2.21E-08
12	GO:0009733: response to auxin	1.12E-07
13	GO:0040008: regulation of growth	4.59E-07
14	GO:0046620: regulation of organ growth	8.11E-05
15	GO:1900865: chloroplast RNA modification	1.90E-04
16	GO:0016131: brassinosteroid metabolic process	4.26E-04
17	GO:0016554: cytidine to uridine editing	5.92E-04
18	GO:0030488: tRNA methylation	7.83E-04
19	GO:0042659: regulation of cell fate specification	7.84E-04
20	GO:0000025: maltose catabolic process	7.84E-04
21	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	7.84E-04
22	GO:0090558: plant epidermis development	7.84E-04
23	GO:0046520: sphingoid biosynthetic process	7.84E-04
24	GO:0043266: regulation of potassium ion transport	7.84E-04
25	GO:0010480: microsporocyte differentiation	7.84E-04
26	GO:2000021: regulation of ion homeostasis	7.84E-04
27	GO:0035987: endodermal cell differentiation	7.84E-04
28	GO:0051247: positive regulation of protein metabolic process	7.84E-04
29	GO:1902458: positive regulation of stomatal opening	7.84E-04
30	GO:0015904: tetracycline transport	7.84E-04
31	GO:2000905: negative regulation of starch metabolic process	7.84E-04
32	GO:0034757: negative regulation of iron ion transport	7.84E-04
33	GO:0030307: positive regulation of cell growth	9.97E-04
34	GO:0006955: immune response	9.97E-04
35	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.09E-03
36	GO:2000070: regulation of response to water deprivation	1.24E-03
37	GO:0006865: amino acid transport	1.34E-03
38	GO:0007186: G-protein coupled receptor signaling pathway	1.51E-03
39	GO:1900871: chloroplast mRNA modification	1.70E-03
40	GO:0010271: regulation of chlorophyll catabolic process	1.70E-03
41	GO:0006432: phenylalanyl-tRNA aminoacylation	1.70E-03
42	GO:1900033: negative regulation of trichome patterning	1.70E-03
43	GO:0080009: mRNA methylation	1.70E-03
44	GO:0009786: regulation of asymmetric cell division	1.70E-03
45	GO:0031648: protein destabilization	1.70E-03
46	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.70E-03
47	GO:0006568: tryptophan metabolic process	1.70E-03
48	GO:0015824: proline transport	1.70E-03
49	GO:0000373: Group II intron splicing	1.82E-03
50	GO:0009646: response to absence of light	2.02E-03
51	GO:0009098: leucine biosynthetic process	2.15E-03
52	GO:0048829: root cap development	2.52E-03
53	GO:0033591: response to L-ascorbic acid	2.81E-03
54	GO:0090708: specification of plant organ axis polarity	2.81E-03
55	GO:0080117: secondary growth	2.81E-03
56	GO:0048586: regulation of long-day photoperiodism, flowering	2.81E-03
57	GO:0030029: actin filament-based process	2.81E-03
58	GO:0090506: axillary shoot meristem initiation	2.81E-03
59	GO:0010582: floral meristem determinacy	3.35E-03
60	GO:0010588: cotyledon vascular tissue pattern formation	3.81E-03
61	GO:0006006: glucose metabolic process	3.81E-03
62	GO:0009725: response to hormone	3.81E-03
63	GO:0034059: response to anoxia	4.09E-03
64	GO:0010306: rhamnogalacturonan II biosynthetic process	4.09E-03
65	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	4.09E-03
66	GO:1990019: protein storage vacuole organization	4.09E-03
67	GO:0010371: regulation of gibberellin biosynthetic process	4.09E-03
68	GO:0051513: regulation of monopolar cell growth	4.09E-03
69	GO:0051639: actin filament network formation	4.09E-03
70	GO:0010029: regulation of seed germination	4.18E-03
71	GO:0045892: negative regulation of transcription, DNA-templated	5.07E-03
72	GO:2000306: positive regulation of photomorphogenesis	5.53E-03
73	GO:0030104: water homeostasis	5.53E-03
74	GO:0008295: spermidine biosynthetic process	5.53E-03
75	GO:0009755: hormone-mediated signaling pathway	5.53E-03
76	GO:0048629: trichome patterning	5.53E-03
77	GO:0010109: regulation of photosynthesis	5.53E-03
78	GO:0051764: actin crosslink formation	5.53E-03
79	GO:0042274: ribosomal small subunit biogenesis	5.53E-03
80	GO:0000160: phosphorelay signal transduction system	5.83E-03
81	GO:0051017: actin filament bundle assembly	6.01E-03
82	GO:0007275: multicellular organism development	6.97E-03
83	GO:0010158: abaxial cell fate specification	7.11E-03
84	GO:0080110: sporopollenin biosynthetic process	7.11E-03
85	GO:0045487: gibberellin catabolic process	7.11E-03
86	GO:0045038: protein import into chloroplast thylakoid membrane	7.11E-03
87	GO:0048497: maintenance of floral organ identity	7.11E-03
88	GO:0009107: lipoate biosynthetic process	7.11E-03
89	GO:0016123: xanthophyll biosynthetic process	7.11E-03
90	GO:0010438: cellular response to sulfur starvation	7.11E-03
91	GO:0016998: cell wall macromolecule catabolic process	7.31E-03
92	GO:0010431: seed maturation	7.31E-03
93	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.76E-03
94	GO:0071215: cellular response to abscisic acid stimulus	8.76E-03
95	GO:0009686: gibberellin biosynthetic process	8.76E-03
96	GO:0010358: leaf shaping	8.84E-03
97	GO:0009913: epidermal cell differentiation	8.84E-03
98	GO:1902456: regulation of stomatal opening	8.84E-03
99	GO:0048831: regulation of shoot system development	8.84E-03
100	GO:0010190: cytochrome b6f complex assembly	8.84E-03
101	GO:0003006: developmental process involved in reproduction	8.84E-03
102	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.84E-03
103	GO:0010405: arabinogalactan protein metabolic process	8.84E-03
104	GO:0009959: negative gravitropism	8.84E-03
105	GO:0009926: auxin polar transport	1.03E-02
106	GO:0009082: branched-chain amino acid biosynthetic process	1.07E-02
107	GO:0006694: steroid biosynthetic process	1.07E-02
108	GO:0031930: mitochondria-nucleus signaling pathway	1.07E-02
109	GO:0048509: regulation of meristem development	1.07E-02
110	GO:0009099: valine biosynthetic process	1.07E-02
111	GO:0009648: photoperiodism	1.07E-02
112	GO:2000067: regulation of root morphogenesis	1.07E-02
113	GO:0010087: phloem or xylem histogenesis	1.12E-02
114	GO:0009636: response to toxic substance	1.20E-02
115	GO:0010182: sugar mediated signaling pathway	1.21E-02
116	GO:0009741: response to brassinosteroid	1.21E-02
117	GO:0010268: brassinosteroid homeostasis	1.21E-02
118	GO:0010050: vegetative phase change	1.27E-02
119	GO:0048437: floral organ development	1.27E-02
120	GO:0010098: suspensor development	1.27E-02
121	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	1.27E-02
122	GO:0010161: red light signaling pathway	1.27E-02
123	GO:0006402: mRNA catabolic process	1.48E-02
124	GO:0010439: regulation of glucosinolate biosynthetic process	1.48E-02
125	GO:0009819: drought recovery	1.48E-02
126	GO:0009850: auxin metabolic process	1.48E-02
127	GO:0009690: cytokinin metabolic process	1.48E-02
128	GO:0006605: protein targeting	1.48E-02
129	GO:0009704: de-etiolation	1.48E-02
130	GO:0055075: potassium ion homeostasis	1.48E-02
131	GO:0000105: histidine biosynthetic process	1.48E-02
132	GO:0000302: response to reactive oxygen species	1.50E-02
133	GO:0016132: brassinosteroid biosynthetic process	1.50E-02
134	GO:0009736: cytokinin-activated signaling pathway	1.51E-02
135	GO:0010583: response to cyclopentenone	1.60E-02
136	GO:0032502: developmental process	1.60E-02
137	GO:0015996: chlorophyll catabolic process	1.71E-02
138	GO:0009657: plastid organization	1.71E-02
139	GO:0009097: isoleucine biosynthetic process	1.71E-02
140	GO:0010100: negative regulation of photomorphogenesis	1.71E-02
141	GO:0010099: regulation of photomorphogenesis	1.71E-02
142	GO:0009909: regulation of flower development	1.72E-02
143	GO:0006464: cellular protein modification process	1.82E-02
144	GO:0009828: plant-type cell wall loosening	1.82E-02
145	GO:0009051: pentose-phosphate shunt, oxidative branch	1.94E-02
146	GO:0051865: protein autoubiquitination	1.94E-02
147	GO:0006098: pentose-phosphate shunt	1.94E-02
148	GO:0048507: meristem development	1.94E-02
149	GO:0006783: heme biosynthetic process	1.94E-02
150	GO:0009056: catabolic process	1.94E-02
151	GO:0010027: thylakoid membrane organization	2.18E-02
152	GO:0006779: porphyrin-containing compound biosynthetic process	2.19E-02
153	GO:0010018: far-red light signaling pathway	2.19E-02
154	GO:2000280: regulation of root development	2.19E-02
155	GO:0016571: histone methylation	2.19E-02
156	GO:0009740: gibberellic acid mediated signaling pathway	2.19E-02
157	GO:0031425: chloroplast RNA processing	2.19E-02
158	GO:0016573: histone acetylation	2.19E-02
159	GO:0009416: response to light stimulus	2.25E-02
160	GO:0009826: unidimensional cell growth	2.44E-02
161	GO:0009299: mRNA transcription	2.44E-02
162	GO:0006782: protoporphyrinogen IX biosynthetic process	2.44E-02
163	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.44E-02
164	GO:0009641: shade avoidance	2.44E-02
165	GO:0016441: posttranscriptional gene silencing	2.44E-02
166	GO:0006949: syncytium formation	2.44E-02
167	GO:0009742: brassinosteroid mediated signaling pathway	2.54E-02
168	GO:0015995: chlorophyll biosynthetic process	2.57E-02
169	GO:0009658: chloroplast organization	2.58E-02
170	GO:0009773: photosynthetic electron transport in photosystem I	2.71E-02
171	GO:0009682: induced systemic resistance	2.71E-02
172	GO:0009073: aromatic amino acid family biosynthetic process	2.71E-02
173	GO:0006415: translational termination	2.71E-02
174	GO:0009750: response to fructose	2.71E-02
175	GO:0048229: gametophyte development	2.71E-02
176	GO:0005983: starch catabolic process	2.98E-02
177	GO:0045037: protein import into chloroplast stroma	2.98E-02
178	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.98E-02
179	GO:2000012: regulation of auxin polar transport	3.27E-02
180	GO:0010102: lateral root morphogenesis	3.27E-02
181	GO:0010628: positive regulation of gene expression	3.27E-02
182	GO:0009691: cytokinin biosynthetic process	3.27E-02
183	GO:2000028: regulation of photoperiodism, flowering	3.27E-02
184	GO:0010075: regulation of meristem growth	3.27E-02
185	GO:0006094: gluconeogenesis	3.27E-02
186	GO:0009767: photosynthetic electron transport chain	3.27E-02
187	GO:0048527: lateral root development	3.29E-02
188	GO:0009845: seed germination	3.45E-02
189	GO:0048467: gynoecium development	3.56E-02
190	GO:0010207: photosystem II assembly	3.56E-02
191	GO:0010223: secondary shoot formation	3.56E-02
192	GO:0009266: response to temperature stimulus	3.56E-02
193	GO:0009934: regulation of meristem structural organization	3.56E-02
194	GO:0009867: jasmonic acid mediated signaling pathway	3.61E-02
195	GO:0009790: embryo development	3.79E-02
196	GO:0090351: seedling development	3.86E-02
197	GO:0000162: tryptophan biosynthetic process	4.18E-02
198	GO:0042753: positive regulation of circadian rhythm	4.18E-02
199	GO:0006833: water transport	4.18E-02
200	GO:0019762: glucosinolate catabolic process	4.18E-02
201	GO:0006631: fatty acid metabolic process	4.28E-02
202	GO:0080147: root hair cell development	4.49E-02
203	GO:0006338: chromatin remodeling	4.49E-02
204	GO:0010187: negative regulation of seed germination	4.49E-02
205	GO:0005992: trehalose biosynthetic process	4.49E-02
206	GO:0009744: response to sucrose	4.64E-02
207	GO:0009451: RNA modification	4.79E-02
208	GO:0051302: regulation of cell division	4.82E-02
209	GO:0042546: cell wall biogenesis	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0042834: peptidoglycan binding	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0017118: lipoyltransferase activity	2.59E-05
6	GO:0001872: (1->3)-beta-D-glucan binding	1.70E-04
7	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	7.84E-04
8	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	7.84E-04
9	GO:0004134: 4-alpha-glucanotransferase activity	7.84E-04
10	GO:0052381: tRNA dimethylallyltransferase activity	7.84E-04
11	GO:0008395: steroid hydroxylase activity	7.84E-04
12	GO:0010313: phytochrome binding	7.84E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	7.84E-04
14	GO:0010012: steroid 22-alpha hydroxylase activity	7.84E-04
15	GO:0000170: sphingosine hydroxylase activity	7.84E-04
16	GO:0050139: nicotinate-N-glucosyltransferase activity	7.84E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	7.84E-04
18	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	7.84E-04
19	GO:0005227: calcium activated cation channel activity	7.84E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	7.84E-04
21	GO:0008805: carbon-monoxide oxygenase activity	1.70E-03
22	GO:0042284: sphingolipid delta-4 desaturase activity	1.70E-03
23	GO:0008493: tetracycline transporter activity	1.70E-03
24	GO:0004826: phenylalanine-tRNA ligase activity	1.70E-03
25	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.70E-03
26	GO:0050736: O-malonyltransferase activity	1.70E-03
27	GO:0009884: cytokinin receptor activity	1.70E-03
28	GO:0003852: 2-isopropylmalate synthase activity	1.70E-03
29	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.70E-03
30	GO:0043425: bHLH transcription factor binding	1.70E-03
31	GO:0010296: prenylcysteine methylesterase activity	1.70E-03
32	GO:0016415: octanoyltransferase activity	1.70E-03
33	GO:0004766: spermidine synthase activity	1.70E-03
34	GO:0015193: L-proline transmembrane transporter activity	2.81E-03
35	GO:0005034: osmosensor activity	2.81E-03
36	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.81E-03
37	GO:0015171: amino acid transmembrane transporter activity	3.95E-03
38	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	4.09E-03
39	GO:0016149: translation release factor activity, codon specific	4.09E-03
40	GO:0052656: L-isoleucine transaminase activity	4.09E-03
41	GO:0052654: L-leucine transaminase activity	4.09E-03
42	GO:0052655: L-valine transaminase activity	4.09E-03
43	GO:0004084: branched-chain-amino-acid transaminase activity	5.53E-03
44	GO:0019199: transmembrane receptor protein kinase activity	5.53E-03
45	GO:0004345: glucose-6-phosphate dehydrogenase activity	5.53E-03
46	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.53E-03
47	GO:0005528: FK506 binding	6.01E-03
48	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	6.60E-03
49	GO:0004523: RNA-DNA hybrid ribonuclease activity	7.11E-03
50	GO:0005471: ATP:ADP antiporter activity	7.11E-03
51	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	7.11E-03
52	GO:0008725: DNA-3-methyladenine glycosylase activity	7.11E-03
53	GO:0033612: receptor serine/threonine kinase binding	7.31E-03
54	GO:0003723: RNA binding	8.43E-03
55	GO:0004709: MAP kinase kinase kinase activity	8.84E-03
56	GO:0004130: cytochrome-c peroxidase activity	8.84E-03
57	GO:0000293: ferric-chelate reductase activity	8.84E-03
58	GO:0016688: L-ascorbate peroxidase activity	8.84E-03
59	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	8.84E-03
60	GO:0080030: methyl indole-3-acetate esterase activity	8.84E-03
61	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.84E-03
62	GO:0004332: fructose-bisphosphate aldolase activity	8.84E-03
63	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.07E-02
64	GO:0016832: aldehyde-lyase activity	1.07E-02
65	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.07E-02
66	GO:0019900: kinase binding	1.07E-02
67	GO:0050662: coenzyme binding	1.30E-02
68	GO:0004518: nuclease activity	1.60E-02
69	GO:0004871: signal transducer activity	1.68E-02
70	GO:0000156: phosphorelay response regulator activity	1.71E-02
71	GO:0008173: RNA methyltransferase activity	1.71E-02
72	GO:0051015: actin filament binding	1.71E-02
73	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.77E-02
74	GO:0016759: cellulose synthase activity	1.82E-02
75	GO:0005200: structural constituent of cytoskeleton	1.94E-02
76	GO:0003747: translation release factor activity	1.94E-02
77	GO:0004673: protein histidine kinase activity	2.44E-02
78	GO:0004805: trehalose-phosphatase activity	2.44E-02
79	GO:0030234: enzyme regulator activity	2.44E-02
80	GO:0004519: endonuclease activity	2.56E-02
81	GO:0030247: polysaccharide binding	2.57E-02
82	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.98E-02
83	GO:0000049: tRNA binding	2.98E-02
84	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.24E-02
85	GO:0003725: double-stranded RNA binding	3.27E-02
86	GO:0000155: phosphorelay sensor kinase activity	3.27E-02
87	GO:0009982: pseudouridine synthase activity	3.27E-02
88	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.61E-02
89	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.68E-02
90	GO:0003712: transcription cofactor activity	3.86E-02
91	GO:0008146: sulfotransferase activity	3.86E-02
92	GO:0004674: protein serine/threonine kinase activity	4.42E-02
93	GO:0051536: iron-sulfur cluster binding	4.49E-02
94	GO:0043424: protein histidine kinase binding	4.82E-02
95	GO:0005345: purine nucleobase transmembrane transporter activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	2.29E-03
3	GO:0009528: plastid inner membrane	2.81E-03
4	GO:0019897: extrinsic component of plasma membrane	2.81E-03
5	GO:0030139: endocytic vesicle	2.81E-03
6	GO:0032585: multivesicular body membrane	4.09E-03
7	GO:0032432: actin filament bundle	4.09E-03
8	GO:0009544: chloroplast ATP synthase complex	5.53E-03
9	GO:0009527: plastid outer membrane	5.53E-03
10	GO:0046658: anchored component of plasma membrane	5.92E-03
11	GO:0009654: photosystem II oxygen evolving complex	6.64E-03
12	GO:0015629: actin cytoskeleton	8.76E-03
13	GO:0009986: cell surface	1.27E-02
14	GO:0019898: extrinsic component of membrane	1.40E-02
15	GO:0048226: Casparian strip	1.48E-02
16	GO:0009501: amyloplast	1.48E-02
17	GO:0010494: cytoplasmic stress granule	1.94E-02
18	GO:0005886: plasma membrane	2.60E-02
19	GO:0005884: actin filament	2.71E-02
20	GO:0009543: chloroplast thylakoid lumen	3.13E-02
21	GO:0005578: proteinaceous extracellular matrix	3.27E-02
22	GO:0030095: chloroplast photosystem II	3.56E-02
23	GO:0005875: microtubule associated complex	4.18E-02
24	GO:0009535: chloroplast thylakoid membrane	4.45E-02
25	GO:0042651: thylakoid membrane	4.82E-02