co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G11750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015717: triose phosphate transport	0.00E+00
2	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
3	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
4	GO:1905157: positive regulation of photosynthesis	0.00E+00
5	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0006849: plasma membrane pyruvate transport	0.00E+00
8	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
9	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
10	GO:0015742: alpha-ketoglutarate transport	0.00E+00
11	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
12	GO:0006642: triglyceride mobilization	0.00E+00
13	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
14	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
15	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
16	GO:0009773: photosynthetic electron transport in photosystem I	9.22E-07
17	GO:0015995: chlorophyll biosynthetic process	5.75E-06
18	GO:0032544: plastid translation	1.35E-05
19	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.71E-05
20	GO:0009643: photosynthetic acclimation	1.50E-04
21	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.50E-04
22	GO:1901259: chloroplast rRNA processing	2.05E-04
23	GO:0009955: adaxial/abaxial pattern specification	2.05E-04
24	GO:0009772: photosynthetic electron transport in photosystem II	2.67E-04
25	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	3.22E-04
26	GO:0042371: vitamin K biosynthetic process	3.22E-04
27	GO:0043686: co-translational protein modification	3.22E-04
28	GO:0043007: maintenance of rDNA	3.22E-04
29	GO:0010028: xanthophyll cycle	3.22E-04
30	GO:0034337: RNA folding	3.22E-04
31	GO:0005991: trehalose metabolic process	3.22E-04
32	GO:0006747: FAD biosynthetic process	3.22E-04
33	GO:0000476: maturation of 4.5S rRNA	3.22E-04
34	GO:0080112: seed growth	3.22E-04
35	GO:0000967: rRNA 5'-end processing	3.22E-04
36	GO:0005980: glycogen catabolic process	3.22E-04
37	GO:0030198: extracellular matrix organization	3.22E-04
38	GO:1905039: carboxylic acid transmembrane transport	3.22E-04
39	GO:1905200: gibberellic acid transmembrane transport	3.22E-04
40	GO:0009657: plastid organization	4.12E-04
41	GO:0010206: photosystem II repair	4.95E-04
42	GO:0018026: peptidyl-lysine monomethylation	7.02E-04
43	GO:0090342: regulation of cell aging	7.02E-04
44	GO:0016122: xanthophyll metabolic process	7.02E-04
45	GO:0034470: ncRNA processing	7.02E-04
46	GO:0009658: chloroplast organization	7.23E-04
47	GO:0019253: reductive pentose-phosphate cycle	1.14E-03
48	GO:0035436: triose phosphate transmembrane transport	1.14E-03
49	GO:0006696: ergosterol biosynthetic process	1.14E-03
50	GO:0032504: multicellular organism reproduction	1.14E-03
51	GO:0010207: photosystem II assembly	1.14E-03
52	GO:0019563: glycerol catabolic process	1.14E-03
53	GO:0015979: photosynthesis	1.32E-03
54	GO:0006168: adenine salvage	1.63E-03
55	GO:0043572: plastid fission	1.63E-03
56	GO:0045338: farnesyl diphosphate metabolic process	1.63E-03
57	GO:0006166: purine ribonucleoside salvage	1.63E-03
58	GO:0006020: inositol metabolic process	1.63E-03
59	GO:0071484: cellular response to light intensity	1.63E-03
60	GO:0009152: purine ribonucleotide biosynthetic process	1.63E-03
61	GO:0015729: oxaloacetate transport	1.63E-03
62	GO:0010601: positive regulation of auxin biosynthetic process	1.63E-03
63	GO:0046653: tetrahydrofolate metabolic process	1.63E-03
64	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.63E-03
65	GO:0010731: protein glutathionylation	1.63E-03
66	GO:0046739: transport of virus in multicellular host	1.63E-03
67	GO:0009768: photosynthesis, light harvesting in photosystem I	1.74E-03
68	GO:0006418: tRNA aminoacylation for protein translation	1.74E-03
69	GO:0061077: chaperone-mediated protein folding	1.91E-03
70	GO:0019676: ammonia assimilation cycle	2.19E-03
71	GO:0015743: malate transport	2.19E-03
72	GO:0019464: glycine decarboxylation via glycine cleavage system	2.19E-03
73	GO:0009765: photosynthesis, light harvesting	2.19E-03
74	GO:0015994: chlorophyll metabolic process	2.19E-03
75	GO:0022622: root system development	2.19E-03
76	GO:0015713: phosphoglycerate transport	2.19E-03
77	GO:0006021: inositol biosynthetic process	2.19E-03
78	GO:0032543: mitochondrial translation	2.80E-03
79	GO:0006564: L-serine biosynthetic process	2.80E-03
80	GO:0010236: plastoquinone biosynthetic process	2.80E-03
81	GO:0031365: N-terminal protein amino acid modification	2.80E-03
82	GO:0044209: AMP salvage	2.80E-03
83	GO:0071423: malate transmembrane transport	2.80E-03
84	GO:0080022: primary root development	2.89E-03
85	GO:0009958: positive gravitropism	3.12E-03
86	GO:0006814: sodium ion transport	3.35E-03
87	GO:0000741: karyogamy	3.46E-03
88	GO:0009228: thiamine biosynthetic process	3.46E-03
89	GO:0046855: inositol phosphate dephosphorylation	3.46E-03
90	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.46E-03
91	GO:0006751: glutathione catabolic process	3.46E-03
92	GO:0000470: maturation of LSU-rRNA	3.46E-03
93	GO:1902456: regulation of stomatal opening	3.46E-03
94	GO:0010190: cytochrome b6f complex assembly	3.46E-03
95	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.46E-03
96	GO:0048280: vesicle fusion with Golgi apparatus	4.17E-03
97	GO:0010310: regulation of hydrogen peroxide metabolic process	4.17E-03
98	GO:0042372: phylloquinone biosynthetic process	4.17E-03
99	GO:1901657: glycosyl compound metabolic process	4.38E-03
100	GO:0032880: regulation of protein localization	4.92E-03
101	GO:0048437: floral organ development	4.92E-03
102	GO:0009769: photosynthesis, light harvesting in photosystem II	4.92E-03
103	GO:0009645: response to low light intensity stimulus	4.92E-03
104	GO:0006412: translation	5.42E-03
105	GO:0010027: thylakoid membrane organization	5.57E-03
106	GO:0006353: DNA-templated transcription, termination	5.71E-03
107	GO:0070413: trehalose metabolism in response to stress	5.71E-03
108	GO:0010078: maintenance of root meristem identity	5.71E-03
109	GO:0009231: riboflavin biosynthetic process	5.71E-03
110	GO:0052543: callose deposition in cell wall	5.71E-03
111	GO:0009607: response to biotic stimulus	5.89E-03
112	GO:0043562: cellular response to nitrogen levels	6.55E-03
113	GO:0015996: chlorophyll catabolic process	6.55E-03
114	GO:0010497: plasmodesmata-mediated intercellular transport	6.55E-03
115	GO:0009790: embryo development	6.83E-03
116	GO:0009817: defense response to fungus, incompatible interaction	7.27E-03
117	GO:0006783: heme biosynthetic process	7.42E-03
118	GO:0046685: response to arsenic-containing substance	7.42E-03
119	GO:0009821: alkaloid biosynthetic process	7.42E-03
120	GO:0046916: cellular transition metal ion homeostasis	7.42E-03
121	GO:0016042: lipid catabolic process	7.97E-03
122	GO:0009638: phototropism	8.34E-03
123	GO:0048527: lateral root development	8.41E-03
124	GO:0009853: photorespiration	9.22E-03
125	GO:0045036: protein targeting to chloroplast	9.30E-03
126	GO:0009641: shade avoidance	9.30E-03
127	GO:0010629: negative regulation of gene expression	9.30E-03
128	GO:0006896: Golgi to vacuole transport	9.30E-03
129	GO:0006782: protoporphyrinogen IX biosynthetic process	9.30E-03
130	GO:0006415: translational termination	1.03E-02
131	GO:0018119: peptidyl-cysteine S-nitrosylation	1.03E-02
132	GO:0009684: indoleacetic acid biosynthetic process	1.03E-02
133	GO:0015770: sucrose transport	1.03E-02
134	GO:0006790: sulfur compound metabolic process	1.13E-02
135	GO:0006820: anion transport	1.13E-02
136	GO:0005983: starch catabolic process	1.13E-02
137	GO:0016024: CDP-diacylglycerol biosynthetic process	1.13E-02
138	GO:0010114: response to red light	1.19E-02
139	GO:0010628: positive regulation of gene expression	1.24E-02
140	GO:0006094: gluconeogenesis	1.24E-02
141	GO:0010588: cotyledon vascular tissue pattern formation	1.24E-02
142	GO:2000012: regulation of auxin polar transport	1.24E-02
143	GO:0010102: lateral root morphogenesis	1.24E-02
144	GO:0010223: secondary shoot formation	1.35E-02
145	GO:0009266: response to temperature stimulus	1.35E-02
146	GO:0048467: gynoecium development	1.35E-02
147	GO:0010143: cutin biosynthetic process	1.35E-02
148	GO:0010020: chloroplast fission	1.35E-02
149	GO:0046854: phosphatidylinositol phosphorylation	1.46E-02
150	GO:0009901: anther dehiscence	1.46E-02
151	GO:0051017: actin filament bundle assembly	1.70E-02
152	GO:0005992: trehalose biosynthetic process	1.70E-02
153	GO:0009735: response to cytokinin	1.73E-02
154	GO:0006096: glycolytic process	1.91E-02
155	GO:0016114: terpenoid biosynthetic process	1.95E-02
156	GO:0019915: lipid storage	1.95E-02
157	GO:0009269: response to desiccation	1.95E-02
158	GO:0048367: shoot system development	1.97E-02
159	GO:0006730: one-carbon metabolic process	2.08E-02
160	GO:0016226: iron-sulfur cluster assembly	2.08E-02
161	GO:0016117: carotenoid biosynthetic process	2.49E-02
162	GO:0042147: retrograde transport, endosome to Golgi	2.49E-02
163	GO:0008284: positive regulation of cell proliferation	2.49E-02
164	GO:0010087: phloem or xylem histogenesis	2.63E-02
165	GO:0010197: polar nucleus fusion	2.78E-02
166	GO:0010182: sugar mediated signaling pathway	2.78E-02
167	GO:0009058: biosynthetic process	3.03E-02
168	GO:0019252: starch biosynthetic process	3.07E-02
169	GO:0009556: microsporogenesis	3.07E-02
170	GO:0009851: auxin biosynthetic process	3.07E-02
171	GO:0006623: protein targeting to vacuole	3.07E-02
172	GO:0048825: cotyledon development	3.07E-02
173	GO:0006891: intra-Golgi vesicle-mediated transport	3.23E-02
174	GO:0032502: developmental process	3.38E-02
175	GO:0006413: translational initiation	3.70E-02
176	GO:0005975: carbohydrate metabolic process	3.89E-02
177	GO:0016126: sterol biosynthetic process	4.19E-02
178	GO:0009627: systemic acquired resistance	4.53E-02
179	GO:0006888: ER to Golgi vesicle-mediated transport	4.71E-02
180	GO:0055114: oxidation-reduction process	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0004823: leucine-tRNA ligase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0090711: FMN hydrolase activity	0.00E+00
6	GO:0010303: limit dextrinase activity	0.00E+00
7	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
11	GO:0051060: pullulanase activity	0.00E+00
12	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
13	GO:0019843: rRNA binding	1.44E-06
14	GO:0002161: aminoacyl-tRNA editing activity	1.67E-05
15	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.61E-05
16	GO:0042586: peptide deformylase activity	3.22E-04
17	GO:0034256: chlorophyll(ide) b reductase activity	3.22E-04
18	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.22E-04
19	GO:1905201: gibberellin transmembrane transporter activity	3.22E-04
20	GO:0004807: triose-phosphate isomerase activity	3.22E-04
21	GO:0008184: glycogen phosphorylase activity	3.22E-04
22	GO:0004856: xylulokinase activity	3.22E-04
23	GO:0004645: phosphorylase activity	3.22E-04
24	GO:0004853: uroporphyrinogen decarboxylase activity	3.22E-04
25	GO:0015367: oxoglutarate:malate antiporter activity	7.02E-04
26	GO:0008967: phosphoglycolate phosphatase activity	7.02E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.02E-04
28	GO:0004618: phosphoglycerate kinase activity	7.02E-04
29	GO:0003839: gamma-glutamylcyclotransferase activity	7.02E-04
30	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.02E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	7.02E-04
32	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	7.02E-04
33	GO:0052832: inositol monophosphate 3-phosphatase activity	7.02E-04
34	GO:0003919: FMN adenylyltransferase activity	7.02E-04
35	GO:0008934: inositol monophosphate 1-phosphatase activity	7.02E-04
36	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.02E-04
37	GO:0016630: protochlorophyllide reductase activity	7.02E-04
38	GO:0052833: inositol monophosphate 4-phosphatase activity	7.02E-04
39	GO:0047372: acylglycerol lipase activity	7.88E-04
40	GO:0004751: ribose-5-phosphate isomerase activity	1.14E-03
41	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.14E-03
42	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.14E-03
43	GO:0071917: triose-phosphate transmembrane transporter activity	1.14E-03
44	GO:0008864: formyltetrahydrofolate deformylase activity	1.14E-03
45	GO:0004148: dihydrolipoyl dehydrogenase activity	1.14E-03
46	GO:0050833: pyruvate transmembrane transporter activity	1.14E-03
47	GO:0031409: pigment binding	1.42E-03
48	GO:0005528: FK506 binding	1.57E-03
49	GO:0022890: inorganic cation transmembrane transporter activity	1.63E-03
50	GO:0016851: magnesium chelatase activity	1.63E-03
51	GO:0043023: ribosomal large subunit binding	1.63E-03
52	GO:0008508: bile acid:sodium symporter activity	1.63E-03
53	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.63E-03
54	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.63E-03
55	GO:0015131: oxaloacetate transmembrane transporter activity	1.63E-03
56	GO:0003999: adenine phosphoribosyltransferase activity	1.63E-03
57	GO:0016149: translation release factor activity, codon specific	1.63E-03
58	GO:0015120: phosphoglycerate transmembrane transporter activity	2.19E-03
59	GO:0004659: prenyltransferase activity	2.19E-03
60	GO:0016279: protein-lysine N-methyltransferase activity	2.19E-03
61	GO:0045430: chalcone isomerase activity	2.19E-03
62	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.24E-03
63	GO:0004812: aminoacyl-tRNA ligase activity	2.68E-03
64	GO:0016846: carbon-sulfur lyase activity	2.80E-03
65	GO:0003959: NADPH dehydrogenase activity	2.80E-03
66	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.80E-03
67	GO:0003735: structural constituent of ribosome	3.20E-03
68	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.46E-03
69	GO:0004629: phospholipase C activity	3.46E-03
70	GO:0004556: alpha-amylase activity	3.46E-03
71	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.46E-03
72	GO:0048038: quinone binding	3.85E-03
73	GO:0004435: phosphatidylinositol phospholipase C activity	4.17E-03
74	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.17E-03
75	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.17E-03
76	GO:0016791: phosphatase activity	4.67E-03
77	GO:0015140: malate transmembrane transporter activity	4.92E-03
78	GO:0008237: metallopeptidase activity	4.95E-03
79	GO:0016168: chlorophyll binding	5.89E-03
80	GO:0046914: transition metal ion binding	6.55E-03
81	GO:0102483: scopolin beta-glucosidase activity	6.56E-03
82	GO:0003747: translation release factor activity	7.42E-03
83	GO:0071949: FAD binding	7.42E-03
84	GO:0004222: metalloendopeptidase activity	8.02E-03
85	GO:0016844: strictosidine synthase activity	8.34E-03
86	GO:0008422: beta-glucosidase activity	1.01E-02
87	GO:0008559: xenobiotic-transporting ATPase activity	1.03E-02
88	GO:0015386: potassium:proton antiporter activity	1.03E-02
89	GO:0008515: sucrose transmembrane transporter activity	1.03E-02
90	GO:0016491: oxidoreductase activity	1.09E-02
91	GO:0000049: tRNA binding	1.13E-02
92	GO:0004022: alcohol dehydrogenase (NAD) activity	1.24E-02
93	GO:0004089: carbonate dehydratase activity	1.24E-02
94	GO:0031072: heat shock protein binding	1.24E-02
95	GO:0003725: double-stranded RNA binding	1.24E-02
96	GO:0043621: protein self-association	1.29E-02
97	GO:0008266: poly(U) RNA binding	1.35E-02
98	GO:0008083: growth factor activity	1.35E-02
99	GO:0005525: GTP binding	1.36E-02
100	GO:0051119: sugar transmembrane transporter activity	1.46E-02
101	GO:0016788: hydrolase activity, acting on ester bonds	1.51E-02
102	GO:0051536: iron-sulfur cluster binding	1.70E-02
103	GO:0015079: potassium ion transmembrane transporter activity	1.83E-02
104	GO:0004176: ATP-dependent peptidase activity	1.95E-02
105	GO:0003727: single-stranded RNA binding	2.35E-02
106	GO:0003713: transcription coactivator activity	2.78E-02
107	GO:0015299: solute:proton antiporter activity	2.92E-02
108	GO:0003723: RNA binding	3.38E-02
109	GO:0051015: actin filament binding	3.54E-02
110	GO:0015297: antiporter activity	3.78E-02
111	GO:0016597: amino acid binding	4.03E-02
112	GO:0003743: translation initiation factor activity	4.62E-02
113	GO:0008236: serine-type peptidase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	6.57E-45
3	GO:0009570: chloroplast stroma	1.57E-26
4	GO:0009535: chloroplast thylakoid membrane	2.27E-21
5	GO:0009534: chloroplast thylakoid	1.32E-14
6	GO:0009579: thylakoid	1.87E-13
7	GO:0009941: chloroplast envelope	2.25E-13
8	GO:0009543: chloroplast thylakoid lumen	4.09E-09
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.86E-07
10	GO:0031969: chloroplast membrane	3.09E-07
11	GO:0031977: thylakoid lumen	1.14E-06
12	GO:0009547: plastid ribosome	3.22E-04
13	GO:0005840: ribosome	6.94E-04
14	GO:0009536: plastid	1.01E-03
15	GO:0030095: chloroplast photosystem II	1.14E-03
16	GO:0010007: magnesium chelatase complex	1.14E-03
17	GO:0030076: light-harvesting complex	1.28E-03
18	GO:0005960: glycine cleavage complex	1.63E-03
19	GO:0009517: PSII associated light-harvesting complex II	2.19E-03
20	GO:0009706: chloroplast inner membrane	4.21E-03
21	GO:0012507: ER to Golgi transport vesicle membrane	5.71E-03
22	GO:0016020: membrane	5.80E-03
23	GO:0005763: mitochondrial small ribosomal subunit	7.42E-03
24	GO:0000311: plastid large ribosomal subunit	1.13E-02
25	GO:0032040: small-subunit processome	1.13E-02
26	GO:0046658: anchored component of plasma membrane	1.21E-02
27	GO:0009654: photosystem II oxygen evolving complex	1.83E-02
28	GO:0042651: thylakoid membrane	1.83E-02
29	GO:0015935: small ribosomal subunit	1.95E-02
30	GO:0015629: actin cytoskeleton	2.22E-02
31	GO:0010287: plastoglobule	2.73E-02
32	GO:0009522: photosystem I	2.92E-02
33	GO:0009523: photosystem II	3.07E-02
34	GO:0019898: extrinsic component of membrane	3.07E-02
35	GO:0010319: stromule	3.86E-02