Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G09560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010793: regulation of mRNA export from nucleus0.00E+00
2GO:1904250: positive regulation of age-related resistance0.00E+00
3GO:0010398: xylogalacturonan metabolic process0.00E+00
4GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
5GO:0072722: response to amitrole0.00E+00
6GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
7GO:0090400: stress-induced premature senescence0.00E+00
8GO:0048034: heme O biosynthetic process0.00E+00
9GO:0000162: tryptophan biosynthetic process5.69E-07
10GO:0009407: toxin catabolic process1.02E-06
11GO:0010150: leaf senescence4.04E-06
12GO:0046686: response to cadmium ion6.10E-06
13GO:0006564: L-serine biosynthetic process3.81E-05
14GO:0055114: oxidation-reduction process7.61E-05
15GO:1900056: negative regulation of leaf senescence1.05E-04
16GO:0009651: response to salt stress1.15E-04
17GO:0009851: auxin biosynthetic process1.24E-04
18GO:0033306: phytol metabolic process1.75E-04
19GO:0042964: thioredoxin reduction1.75E-04
20GO:0006979: response to oxidative stress2.83E-04
21GO:0045454: cell redox homeostasis3.01E-04
22GO:0052544: defense response by callose deposition in cell wall3.36E-04
23GO:0071497: cellular response to freezing3.96E-04
24GO:0015709: thiosulfate transport3.96E-04
25GO:0071422: succinate transmembrane transport3.96E-04
26GO:0050684: regulation of mRNA processing3.96E-04
27GO:0015865: purine nucleotide transport3.96E-04
28GO:1902000: homogentisate catabolic process3.96E-04
29GO:0006807: nitrogen compound metabolic process4.39E-04
30GO:0006065: UDP-glucuronate biosynthetic process6.47E-04
31GO:0010272: response to silver ion6.47E-04
32GO:0009072: aromatic amino acid family metabolic process6.47E-04
33GO:0052546: cell wall pectin metabolic process6.47E-04
34GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity6.47E-04
35GO:0006591: ornithine metabolic process6.47E-04
36GO:0006556: S-adenosylmethionine biosynthetic process6.47E-04
37GO:0032784: regulation of DNA-templated transcription, elongation6.47E-04
38GO:0061158: 3'-UTR-mediated mRNA destabilization6.47E-04
39GO:0006874: cellular calcium ion homeostasis7.52E-04
40GO:0016998: cell wall macromolecule catabolic process8.23E-04
41GO:0015729: oxaloacetate transport9.23E-04
42GO:0046902: regulation of mitochondrial membrane permeability9.23E-04
43GO:0010188: response to microbial phytotoxin1.22E-03
44GO:0006878: cellular copper ion homeostasis1.22E-03
45GO:0045227: capsule polysaccharide biosynthetic process1.22E-03
46GO:0048830: adventitious root development1.22E-03
47GO:0033358: UDP-L-arabinose biosynthetic process1.22E-03
48GO:0010600: regulation of auxin biosynthetic process1.22E-03
49GO:0006662: glycerol ether metabolic process1.32E-03
50GO:0046283: anthocyanin-containing compound metabolic process1.56E-03
51GO:0071423: malate transmembrane transport1.56E-03
52GO:0009759: indole glucosinolate biosynthetic process1.91E-03
53GO:0006561: proline biosynthetic process1.91E-03
54GO:0010264: myo-inositol hexakisphosphate biosynthetic process1.91E-03
55GO:0009228: thiamine biosynthetic process1.91E-03
56GO:0035435: phosphate ion transmembrane transport1.91E-03
57GO:0051607: defense response to virus2.21E-03
58GO:0009099: valine biosynthetic process2.30E-03
59GO:0009082: branched-chain amino acid biosynthetic process2.30E-03
60GO:1902074: response to salt2.70E-03
61GO:0080186: developmental vegetative growth2.70E-03
62GO:0071669: plant-type cell wall organization or biogenesis2.70E-03
63GO:0008272: sulfate transport2.70E-03
64GO:0050829: defense response to Gram-negative bacterium2.70E-03
65GO:1900057: positive regulation of leaf senescence2.70E-03
66GO:0009819: drought recovery3.13E-03
67GO:0043068: positive regulation of programmed cell death3.13E-03
68GO:0010311: lateral root formation3.19E-03
69GO:0010043: response to zinc ion3.51E-03
70GO:0007186: G-protein coupled receptor signaling pathway3.58E-03
71GO:0019430: removal of superoxide radicals3.58E-03
72GO:0010120: camalexin biosynthetic process3.58E-03
73GO:0009097: isoleucine biosynthetic process3.58E-03
74GO:0034599: cellular response to oxidative stress4.02E-03
75GO:0006783: heme biosynthetic process4.05E-03
76GO:0010112: regulation of systemic acquired resistance4.05E-03
77GO:0046685: response to arsenic-containing substance4.05E-03
78GO:0019432: triglyceride biosynthetic process4.05E-03
79GO:0006839: mitochondrial transport4.38E-03
80GO:0009098: leucine biosynthetic process4.54E-03
81GO:0042542: response to hydrogen peroxide4.75E-03
82GO:0051707: response to other organism4.95E-03
83GO:0006032: chitin catabolic process5.05E-03
84GO:0009688: abscisic acid biosynthetic process5.05E-03
85GO:0009641: shade avoidance5.05E-03
86GO:0009636: response to toxic substance5.56E-03
87GO:0000272: polysaccharide catabolic process5.58E-03
88GO:0009684: indoleacetic acid biosynthetic process5.58E-03
89GO:0009682: induced systemic resistance5.58E-03
90GO:0006415: translational termination5.58E-03
91GO:0009723: response to ethylene5.81E-03
92GO:0006890: retrograde vesicle-mediated transport, Golgi to ER6.13E-03
93GO:0071365: cellular response to auxin stimulus6.13E-03
94GO:2000028: regulation of photoperiodism, flowering6.70E-03
95GO:0009718: anthocyanin-containing compound biosynthetic process6.70E-03
96GO:0009225: nucleotide-sugar metabolic process7.89E-03
97GO:0006886: intracellular protein transport8.30E-03
98GO:0005992: trehalose biosynthetic process9.15E-03
99GO:0045333: cellular respiration9.15E-03
100GO:0051302: regulation of cell division9.80E-03
101GO:0071456: cellular response to hypoxia1.12E-02
102GO:0030245: cellulose catabolic process1.12E-02
103GO:0006730: one-carbon metabolic process1.12E-02
104GO:0009753: response to jasmonic acid1.14E-02
105GO:0006012: galactose metabolic process1.19E-02
106GO:0009693: ethylene biosynthetic process1.19E-02
107GO:0009058: biosynthetic process1.26E-02
108GO:0042147: retrograde transport, endosome to Golgi1.33E-02
109GO:0042744: hydrogen peroxide catabolic process1.36E-02
110GO:0042631: cellular response to water deprivation1.41E-02
111GO:0046323: glucose import1.49E-02
112GO:0045489: pectin biosynthetic process1.49E-02
113GO:0042742: defense response to bacterium1.52E-02
114GO:0048544: recognition of pollen1.56E-02
115GO:0006814: sodium ion transport1.56E-02
116GO:0040008: regulation of growth1.57E-02
117GO:0006623: protein targeting to vacuole1.64E-02
118GO:0010183: pollen tube guidance1.64E-02
119GO:0006891: intra-Golgi vesicle-mediated transport1.72E-02
120GO:0009630: gravitropism1.81E-02
121GO:1901657: glycosyl compound metabolic process1.89E-02
122GO:0071281: cellular response to iron ion1.89E-02
123GO:0009617: response to bacterium1.97E-02
124GO:0009567: double fertilization forming a zygote and endosperm1.98E-02
125GO:0019760: glucosinolate metabolic process1.98E-02
126GO:0010252: auxin homeostasis1.98E-02
127GO:0009615: response to virus2.24E-02
128GO:0010029: regulation of seed germination2.33E-02
129GO:0009627: systemic acquired resistance2.42E-02
130GO:0006974: cellular response to DNA damage stimulus2.42E-02
131GO:0006888: ER to Golgi vesicle-mediated transport2.52E-02
132GO:0016049: cell growth2.61E-02
133GO:0009817: defense response to fungus, incompatible interaction2.71E-02
134GO:0050832: defense response to fungus2.74E-02
135GO:0006970: response to osmotic stress2.75E-02
136GO:0005975: carbohydrate metabolic process2.83E-02
137GO:0048527: lateral root development3.00E-02
138GO:0006897: endocytosis3.62E-02
139GO:0010114: response to red light3.84E-02
140GO:0007275: multicellular organism development4.12E-02
141GO:0006869: lipid transport4.14E-02
142GO:0009965: leaf morphogenesis4.17E-02
143GO:0006812: cation transport4.51E-02
144GO:0009664: plant-type cell wall organization4.51E-02
145GO:0009846: pollen germination4.51E-02
146GO:0042538: hyperosmotic salinity response4.51E-02
147GO:0009751: response to salicylic acid4.58E-02
148GO:0009737: response to abscisic acid4.61E-02
149GO:0006813: potassium ion transport4.74E-02
150GO:0009736: cytokinin-activated signaling pathway4.74E-02
RankGO TermAdjusted P value
1GO:0015148: D-xylose transmembrane transporter activity0.00E+00
2GO:0008495: protoheme IX farnesyltransferase activity0.00E+00
3GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
4GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
5GO:0016034: maleylacetoacetate isomerase activity0.00E+00
6GO:0015576: sorbitol transmembrane transporter activity0.00E+00
7GO:0051766: inositol trisphosphate kinase activity0.00E+00
8GO:0051670: inulinase activity0.00E+00
9GO:0051765: inositol tetrakisphosphate kinase activity0.00E+00
10GO:0015575: mannitol transmembrane transporter activity0.00E+00
11GO:0015591: D-ribose transmembrane transporter activity0.00E+00
12GO:0019172: glyoxalase III activity1.48E-06
13GO:0004364: glutathione transferase activity2.62E-06
14GO:0004601: peroxidase activity1.41E-05
15GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity5.65E-05
16GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity5.65E-05
17GO:0043295: glutathione binding1.05E-04
18GO:0004791: thioredoxin-disulfide reductase activity1.11E-04
19GO:0031219: levanase activity1.75E-04
20GO:0015168: glycerol transmembrane transporter activity1.75E-04
21GO:2001147: camalexin binding1.75E-04
22GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity1.75E-04
23GO:0004649: poly(ADP-ribose) glycohydrolase activity1.75E-04
24GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity1.75E-04
25GO:0010179: IAA-Ala conjugate hydrolase activity1.75E-04
26GO:2001227: quercitrin binding1.75E-04
27GO:0004425: indole-3-glycerol-phosphate synthase activity1.75E-04
28GO:0000824: inositol tetrakisphosphate 3-kinase activity1.75E-04
29GO:0033984: indole-3-glycerol-phosphate lyase activity1.75E-04
30GO:0051669: fructan beta-fructosidase activity1.75E-04
31GO:0047326: inositol tetrakisphosphate 5-kinase activity1.75E-04
32GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity1.75E-04
33GO:0015035: protein disulfide oxidoreductase activity1.95E-04
34GO:1901677: phosphate transmembrane transporter activity3.96E-04
35GO:0004617: phosphoglycerate dehydrogenase activity3.96E-04
36GO:0015117: thiosulfate transmembrane transporter activity3.96E-04
37GO:0004970: ionotropic glutamate receptor activity5.54E-04
38GO:0005217: intracellular ligand-gated ion channel activity5.54E-04
39GO:0004049: anthranilate synthase activity6.47E-04
40GO:0003979: UDP-glucose 6-dehydrogenase activity6.47E-04
41GO:0004478: methionine adenosyltransferase activity6.47E-04
42GO:0005310: dicarboxylic acid transmembrane transporter activity6.47E-04
43GO:0015141: succinate transmembrane transporter activity6.47E-04
44GO:0003955: NAD(P)H dehydrogenase (quinone) activity6.47E-04
45GO:0010178: IAA-amino acid conjugate hydrolase activity9.23E-04
46GO:0016656: monodehydroascorbate reductase (NADH) activity9.23E-04
47GO:0052656: L-isoleucine transaminase activity9.23E-04
48GO:0052654: L-leucine transaminase activity9.23E-04
49GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity9.23E-04
50GO:0017077: oxidative phosphorylation uncoupler activity9.23E-04
51GO:0052655: L-valine transaminase activity9.23E-04
52GO:0005354: galactose transmembrane transporter activity9.23E-04
53GO:0015131: oxaloacetate transmembrane transporter activity9.23E-04
54GO:0005432: calcium:sodium antiporter activity9.23E-04
55GO:0016149: translation release factor activity, codon specific9.23E-04
56GO:0047134: protein-disulfide reductase activity1.14E-03
57GO:0010279: indole-3-acetic acid amido synthetase activity1.22E-03
58GO:0004659: prenyltransferase activity1.22E-03
59GO:0050373: UDP-arabinose 4-epimerase activity1.22E-03
60GO:0004834: tryptophan synthase activity1.22E-03
61GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.22E-03
62GO:0004084: branched-chain-amino-acid transaminase activity1.22E-03
63GO:0004031: aldehyde oxidase activity1.22E-03
64GO:0004930: G-protein coupled receptor activity1.22E-03
65GO:0050302: indole-3-acetaldehyde oxidase activity1.22E-03
66GO:0003824: catalytic activity1.33E-03
67GO:0005471: ATP:ADP antiporter activity1.56E-03
68GO:0015145: monosaccharide transmembrane transporter activity1.56E-03
69GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.85E-03
70GO:0035252: UDP-xylosyltransferase activity1.91E-03
71GO:0008200: ion channel inhibitor activity1.91E-03
72GO:0008237: metallopeptidase activity2.09E-03
73GO:0004602: glutathione peroxidase activity2.30E-03
74GO:0004144: diacylglycerol O-acyltransferase activity2.30E-03
75GO:0051920: peroxiredoxin activity2.30E-03
76GO:0003978: UDP-glucose 4-epimerase activity2.30E-03
77GO:0015140: malate transmembrane transporter activity2.70E-03
78GO:0004311: farnesyltranstransferase activity3.13E-03
79GO:0015491: cation:cation antiporter activity3.13E-03
80GO:0016209: antioxidant activity3.13E-03
81GO:0003747: translation release factor activity4.05E-03
82GO:0004568: chitinase activity5.05E-03
83GO:0008794: arsenate reductase (glutaredoxin) activity5.58E-03
84GO:0050660: flavin adenine dinucleotide binding5.81E-03
85GO:0051287: NAD binding5.99E-03
86GO:0015116: sulfate transmembrane transporter activity6.13E-03
87GO:0004867: serine-type endopeptidase inhibitor activity7.89E-03
88GO:0008061: chitin binding7.89E-03
89GO:0008810: cellulase activity1.19E-02
90GO:0003727: single-stranded RNA binding1.26E-02
91GO:0004499: N,N-dimethylaniline monooxygenase activity1.26E-02
92GO:0030170: pyridoxal phosphate binding1.32E-02
93GO:0008565: protein transporter activity1.43E-02
94GO:0005199: structural constituent of cell wall1.49E-02
95GO:0030276: clathrin binding1.49E-02
96GO:0008080: N-acetyltransferase activity1.49E-02
97GO:0005355: glucose transmembrane transporter activity1.56E-02
98GO:0010181: FMN binding1.56E-02
99GO:0015297: antiporter activity1.57E-02
100GO:0008289: lipid binding1.58E-02
101GO:0004518: nuclease activity1.81E-02
102GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.06E-02
103GO:0016597: amino acid binding2.15E-02
104GO:0004683: calmodulin-dependent protein kinase activity2.52E-02
105GO:0102483: scopolin beta-glucosidase activity2.52E-02
106GO:0004222: metalloendopeptidase activity2.90E-02
107GO:0020037: heme binding2.99E-02
108GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.00E-02
109GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.05E-02
110GO:0030246: carbohydrate binding3.12E-02
111GO:0003993: acid phosphatase activity3.31E-02
112GO:0005507: copper ion binding3.35E-02
113GO:0004712: protein serine/threonine/tyrosine kinase activity3.41E-02
114GO:0008422: beta-glucosidase activity3.41E-02
115GO:0050661: NADP binding3.52E-02
116GO:0051537: 2 iron, 2 sulfur cluster binding4.06E-02
117GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.08E-02
118GO:0005198: structural molecule activity4.17E-02
119GO:0003924: GTPase activity4.65E-02
120GO:0009055: electron carrier activity4.98E-02
RankGO TermAdjusted P value
1GO:0030121: AP-1 adaptor complex0.00E+00
2GO:0005950: anthranilate synthase complex3.96E-04
3GO:0005886: plasma membrane4.98E-04
4GO:0009530: primary cell wall6.47E-04
5GO:0005829: cytosol1.41E-03
6GO:0009570: chloroplast stroma2.42E-03
7GO:0005788: endoplasmic reticulum lumen2.47E-03
8GO:0030131: clathrin adaptor complex3.13E-03
9GO:0017119: Golgi transport complex5.05E-03
10GO:0031012: extracellular matrix6.70E-03
11GO:0005743: mitochondrial inner membrane9.49E-03
12GO:0005905: clathrin-coated pit1.05E-02
13GO:0005737: cytoplasm1.10E-02
14GO:0031965: nuclear membrane1.64E-02
15GO:0005618: cell wall1.65E-02
16GO:0071944: cell periphery1.89E-02
17GO:0032580: Golgi cisterna membrane1.98E-02
18GO:0000139: Golgi membrane2.39E-02
19GO:0009707: chloroplast outer membrane2.71E-02
20GO:0005773: vacuole2.85E-02
21GO:0005794: Golgi apparatus2.92E-02
22GO:0009506: plasmodesma3.20E-02
23GO:0005774: vacuolar membrane3.53E-02
24GO:0031225: anchored component of membrane3.75E-02
25GO:0090406: pollen tube3.84E-02
26GO:0005783: endoplasmic reticulum4.70E-02
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Gene type



Gene DE type