co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
4	GO:0046486: glycerolipid metabolic process	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0009686: gibberellin biosynthetic process	2.27E-05
8	GO:0010070: zygote asymmetric cell division	4.05E-04
9	GO:0043686: co-translational protein modification	4.05E-04
10	GO:0051013: microtubule severing	4.05E-04
11	GO:0045786: negative regulation of cell cycle	4.05E-04
12	GO:0010726: positive regulation of hydrogen peroxide metabolic process	4.05E-04
13	GO:0007186: G-protein coupled receptor signaling pathway	5.75E-04
14	GO:0009733: response to auxin	6.22E-04
15	GO:0010069: zygote asymmetric cytokinesis in embryo sac	8.76E-04
16	GO:0006650: glycerophospholipid metabolic process	8.76E-04
17	GO:0061062: regulation of nematode larval development	8.76E-04
18	GO:0031648: protein destabilization	8.76E-04
19	GO:0006518: peptide metabolic process	1.42E-03
20	GO:0048575: short-day photoperiodism, flowering	1.42E-03
21	GO:0045910: negative regulation of DNA recombination	1.42E-03
22	GO:0090506: axillary shoot meristem initiation	1.42E-03
23	GO:0034090: maintenance of meiotic sister chromatid cohesion	1.42E-03
24	GO:0046168: glycerol-3-phosphate catabolic process	1.42E-03
25	GO:0009887: animal organ morphogenesis	1.59E-03
26	GO:0009825: multidimensional cell growth	1.78E-03
27	GO:0009734: auxin-activated signaling pathway	1.98E-03
28	GO:0006863: purine nucleobase transport	1.99E-03
29	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.04E-03
30	GO:0010321: regulation of vegetative phase change	2.06E-03
31	GO:0045017: glycerolipid biosynthetic process	2.06E-03
32	GO:0007276: gamete generation	2.06E-03
33	GO:0006072: glycerol-3-phosphate metabolic process	2.06E-03
34	GO:0042991: transcription factor import into nucleus	2.76E-03
35	GO:0006021: inositol biosynthetic process	2.76E-03
36	GO:0009956: radial pattern formation	2.76E-03
37	GO:0048629: trichome patterning	2.76E-03
38	GO:0006351: transcription, DNA-templated	3.51E-03
39	GO:0009696: salicylic acid metabolic process	3.54E-03
40	GO:0045487: gibberellin catabolic process	3.54E-03
41	GO:0031365: N-terminal protein amino acid modification	3.54E-03
42	GO:0009107: lipoate biosynthetic process	3.54E-03
43	GO:0003006: developmental process involved in reproduction	4.38E-03
44	GO:0010942: positive regulation of cell death	4.38E-03
45	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	4.38E-03
46	GO:0016554: cytidine to uridine editing	4.38E-03
47	GO:0071554: cell wall organization or biogenesis	5.42E-03
48	GO:0010583: response to cyclopentenone	5.79E-03
49	GO:0009740: gibberellic acid mediated signaling pathway	6.04E-03
50	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	6.23E-03
51	GO:0007050: cell cycle arrest	6.23E-03
52	GO:0042255: ribosome assembly	7.25E-03
53	GO:0046620: regulation of organ growth	7.25E-03
54	GO:0006353: DNA-templated transcription, termination	7.25E-03
55	GO:0006402: mRNA catabolic process	7.25E-03
56	GO:0009704: de-etiolation	7.25E-03
57	GO:0010492: maintenance of shoot apical meristem identity	7.25E-03
58	GO:0000105: histidine biosynthetic process	7.25E-03
59	GO:0016567: protein ubiquitination	8.02E-03
60	GO:0032544: plastid translation	8.32E-03
61	GO:0006468: protein phosphorylation	8.69E-03
62	GO:0009627: systemic acquired resistance	8.77E-03
63	GO:0048573: photoperiodism, flowering	9.25E-03
64	GO:0048507: meristem development	9.45E-03
65	GO:0051865: protein autoubiquitination	9.45E-03
66	GO:0000373: Group II intron splicing	9.45E-03
67	GO:0048589: developmental growth	9.45E-03
68	GO:0009056: catabolic process	9.45E-03
69	GO:0009416: response to light stimulus	1.04E-02
70	GO:0045892: negative regulation of transcription, DNA-templated	1.05E-02
71	GO:1900865: chloroplast RNA modification	1.06E-02
72	GO:0009832: plant-type cell wall biogenesis	1.08E-02
73	GO:0006811: ion transport	1.13E-02
74	GO:0009641: shade avoidance	1.19E-02
75	GO:0006298: mismatch repair	1.19E-02
76	GO:0010192: mucilage biosynthetic process	1.19E-02
77	GO:0010629: negative regulation of gene expression	1.19E-02
78	GO:0040008: regulation of growth	1.24E-02
79	GO:0008285: negative regulation of cell proliferation	1.31E-02
80	GO:0009750: response to fructose	1.31E-02
81	GO:0006355: regulation of transcription, DNA-templated	1.42E-02
82	GO:0005983: starch catabolic process	1.45E-02
83	GO:0010582: floral meristem determinacy	1.45E-02
84	GO:0010152: pollen maturation	1.45E-02
85	GO:0006790: sulfur compound metabolic process	1.45E-02
86	GO:0009739: response to gibberellin	1.51E-02
87	GO:0010102: lateral root morphogenesis	1.58E-02
88	GO:2000028: regulation of photoperiodism, flowering	1.58E-02
89	GO:0009926: auxin polar transport	1.69E-02
90	GO:0009933: meristem structural organization	1.73E-02
91	GO:0010207: photosystem II assembly	1.73E-02
92	GO:0010223: secondary shoot formation	1.73E-02
93	GO:0010540: basipetal auxin transport	1.73E-02
94	GO:0006302: double-strand break repair	1.73E-02
95	GO:0048768: root hair cell tip growth	1.73E-02
96	GO:0048467: gynoecium development	1.73E-02
97	GO:0042546: cell wall biogenesis	1.75E-02
98	GO:0090351: seedling development	1.87E-02
99	GO:0046854: phosphatidylinositol phosphorylation	1.87E-02
100	GO:0009833: plant-type primary cell wall biogenesis	2.02E-02
101	GO:0009736: cytokinin-activated signaling pathway	2.28E-02
102	GO:0009658: chloroplast organization	2.28E-02
103	GO:0043622: cortical microtubule organization	2.33E-02
104	GO:0006874: cellular calcium ion homeostasis	2.33E-02
105	GO:0051321: meiotic cell cycle	2.50E-02
106	GO:0016114: terpenoid biosynthetic process	2.50E-02
107	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.66E-02
108	GO:0048366: leaf development	2.80E-02
109	GO:0071215: cellular response to abscisic acid stimulus	2.83E-02
110	GO:0010082: regulation of root meristem growth	2.83E-02
111	GO:0001944: vasculature development	2.83E-02
112	GO:0009908: flower development	2.84E-02
113	GO:0006284: base-excision repair	3.01E-02
114	GO:0010091: trichome branching	3.01E-02
115	GO:0042127: regulation of cell proliferation	3.01E-02
116	GO:0048443: stamen development	3.01E-02
117	GO:0009624: response to nematode	3.24E-02
118	GO:0000271: polysaccharide biosynthetic process	3.37E-02
119	GO:0000226: microtubule cytoskeleton organization	3.37E-02
120	GO:0071555: cell wall organization	3.45E-02
121	GO:0010305: leaf vascular tissue pattern formation	3.55E-02
122	GO:0009958: positive gravitropism	3.55E-02
123	GO:0010182: sugar mediated signaling pathway	3.55E-02
124	GO:0045489: pectin biosynthetic process	3.55E-02
125	GO:0048825: cotyledon development	3.93E-02
126	GO:0009749: response to glucose	3.93E-02
127	GO:0008654: phospholipid biosynthetic process	3.93E-02
128	GO:0002229: defense response to oomycetes	4.12E-02
129	GO:0019761: glucosinolate biosynthetic process	4.32E-02
130	GO:0032502: developmental process	4.32E-02
131	GO:0010090: trichome morphogenesis	4.52E-02
132	GO:1901657: glycosyl compound metabolic process	4.52E-02
133	GO:0009639: response to red or far red light	4.73E-02
134	GO:0006464: cellular protein modification process	4.73E-02
135	GO:0009567: double fertilization forming a zygote and endosperm	4.73E-02
136	GO:0019760: glucosinolate metabolic process	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
6	GO:0042586: peptide deformylase activity	4.05E-04
7	GO:0008568: microtubule-severing ATPase activity	4.05E-04
8	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.05E-04
9	GO:0005227: calcium activated cation channel activity	4.05E-04
10	GO:0008934: inositol monophosphate 1-phosphatase activity	8.76E-04
11	GO:0052833: inositol monophosphate 4-phosphatase activity	8.76E-04
12	GO:0019156: isoamylase activity	8.76E-04
13	GO:0017118: lipoyltransferase activity	8.76E-04
14	GO:0045543: gibberellin 2-beta-dioxygenase activity	8.76E-04
15	GO:0010296: prenylcysteine methylesterase activity	8.76E-04
16	GO:0016415: octanoyltransferase activity	8.76E-04
17	GO:0052832: inositol monophosphate 3-phosphatase activity	8.76E-04
18	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.76E-04
19	GO:0008805: carbon-monoxide oxygenase activity	8.76E-04
20	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.42E-03
21	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.42E-03
22	GO:0080031: methyl salicylate esterase activity	2.06E-03
23	GO:0045544: gibberellin 20-oxidase activity	2.06E-03
24	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.06E-03
25	GO:0005345: purine nucleobase transmembrane transporter activity	2.43E-03
26	GO:0004930: G-protein coupled receptor activity	2.76E-03
27	GO:0010011: auxin binding	2.76E-03
28	GO:0004871: signal transducer activity	2.87E-03
29	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.10E-03
30	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.54E-03
31	GO:0008725: DNA-3-methyladenine glycosylase activity	3.54E-03
32	GO:0030332: cyclin binding	4.38E-03
33	GO:0004556: alpha-amylase activity	4.38E-03
34	GO:0030983: mismatched DNA binding	4.38E-03
35	GO:0080030: methyl indole-3-acetate esterase activity	4.38E-03
36	GO:0004709: MAP kinase kinase kinase activity	4.38E-03
37	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	4.38E-03
38	GO:0016832: aldehyde-lyase activity	5.27E-03
39	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.27E-03
40	GO:0004518: nuclease activity	5.79E-03
41	GO:0016759: cellulose synthase activity	6.57E-03
42	GO:0016413: O-acetyltransferase activity	7.41E-03
43	GO:0004222: metalloendopeptidase activity	1.13E-02
44	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.43E-02
45	GO:0043621: protein self-association	1.82E-02
46	GO:0005217: intracellular ligand-gated ion channel activity	1.87E-02
47	GO:0008061: chitin binding	1.87E-02
48	GO:0003712: transcription cofactor activity	1.87E-02
49	GO:0004970: ionotropic glutamate receptor activity	1.87E-02
50	GO:0008134: transcription factor binding	2.18E-02
51	GO:0033612: receptor serine/threonine kinase binding	2.50E-02
52	GO:0008408: 3'-5' exonuclease activity	2.50E-02
53	GO:0010333: terpene synthase activity	2.50E-02
54	GO:0004672: protein kinase activity	2.59E-02
55	GO:0004674: protein serine/threonine kinase activity	2.60E-02
56	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.66E-02
57	GO:0030570: pectate lyase activity	2.83E-02
58	GO:0016760: cellulose synthase (UDP-forming) activity	2.83E-02
59	GO:0043565: sequence-specific DNA binding	2.84E-02
60	GO:0003727: single-stranded RNA binding	3.01E-02
61	GO:0003779: actin binding	3.15E-02
62	GO:0005199: structural constituent of cell wall	3.55E-02
63	GO:0016853: isomerase activity	3.74E-02
64	GO:0019843: rRNA binding	4.05E-02
65	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.12E-02
66	GO:0004722: protein serine/threonine phosphatase activity	4.18E-02
67	GO:0016301: kinase activity	4.21E-02
68	GO:0000156: phosphorelay response regulator activity	4.52E-02
69	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.60E-02
70	GO:0003684: damaged DNA binding	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0000791: euchromatin	4.05E-04
4	GO:0030870: Mre11 complex	8.76E-04
5	GO:0009569: chloroplast starch grain	8.76E-04
6	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.06E-03
7	GO:0009531: secondary cell wall	2.06E-03
8	GO:0000795: synaptonemal complex	3.54E-03
9	GO:0030095: chloroplast photosystem II	1.73E-02
10	GO:0005875: microtubule associated complex	2.02E-02
11	GO:0009654: photosystem II oxygen evolving complex	2.33E-02
12	GO:0009532: plastid stroma	2.50E-02
13	GO:0009504: cell plate	3.93E-02
14	GO:0019898: extrinsic component of membrane	3.93E-02
15	GO:0000785: chromatin	4.32E-02
16	GO:0016592: mediator complex	4.32E-02
17	GO:0005886: plasma membrane	4.64E-02