co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
5	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
6	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	1.65E-11
8	GO:0015979: photosynthesis	1.09E-10
9	GO:0090391: granum assembly	1.19E-08
10	GO:0010207: photosystem II assembly	5.99E-07
11	GO:0032544: plastid translation	4.79E-06
12	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.76E-05
13	GO:0071484: cellular response to light intensity	1.76E-05
14	GO:0006094: gluconeogenesis	2.45E-05
15	GO:0015995: chlorophyll biosynthetic process	2.99E-05
16	GO:0019253: reductive pentose-phosphate cycle	3.01E-05
17	GO:0006636: unsaturated fatty acid biosynthetic process	4.33E-05
18	GO:0009735: response to cytokinin	7.04E-05
19	GO:0042549: photosystem II stabilization	7.64E-05
20	GO:0006810: transport	7.98E-05
21	GO:1901259: chloroplast rRNA processing	1.06E-04
22	GO:0009772: photosynthetic electron transport in photosystem II	1.40E-04
23	GO:0010196: nonphotochemical quenching	1.40E-04
24	GO:0080093: regulation of photorespiration	2.11E-04
25	GO:0031998: regulation of fatty acid beta-oxidation	2.11E-04
26	GO:0034337: RNA folding	2.11E-04
27	GO:0006835: dicarboxylic acid transport	2.11E-04
28	GO:0006096: glycolytic process	2.11E-04
29	GO:0005980: glycogen catabolic process	2.11E-04
30	GO:0071277: cellular response to calcium ion	2.11E-04
31	GO:0015671: oxygen transport	2.11E-04
32	GO:0009657: plastid organization	2.22E-04
33	GO:0042254: ribosome biogenesis	2.42E-04
34	GO:0006098: pentose-phosphate shunt	2.70E-04
35	GO:0010206: photosystem II repair	2.70E-04
36	GO:0010027: thylakoid membrane organization	3.27E-04
37	GO:0006412: translation	3.39E-04
38	GO:0006729: tetrahydrobiopterin biosynthetic process	4.71E-04
39	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.71E-04
40	GO:0071457: cellular response to ozone	4.71E-04
41	GO:0010143: cutin biosynthetic process	6.38E-04
42	GO:0006000: fructose metabolic process	7.67E-04
43	GO:0006518: peptide metabolic process	7.67E-04
44	GO:0009768: photosynthesis, light harvesting in photosystem I	9.63E-04
45	GO:0006020: inositol metabolic process	1.09E-03
46	GO:0071486: cellular response to high light intensity	1.45E-03
47	GO:0019464: glycine decarboxylation via glycine cleavage system	1.45E-03
48	GO:0015994: chlorophyll metabolic process	1.45E-03
49	GO:0006546: glycine catabolic process	1.45E-03
50	GO:0006021: inositol biosynthetic process	1.45E-03
51	GO:0055114: oxidation-reduction process	1.48E-03
52	GO:0006097: glyoxylate cycle	1.85E-03
53	GO:0006461: protein complex assembly	1.85E-03
54	GO:0071493: cellular response to UV-B	1.85E-03
55	GO:0006751: glutathione catabolic process	2.28E-03
56	GO:0046855: inositol phosphate dephosphorylation	2.28E-03
57	GO:1902456: regulation of stomatal opening	2.28E-03
58	GO:0010190: cytochrome b6f complex assembly	2.28E-03
59	GO:0009955: adaxial/abaxial pattern specification	2.74E-03
60	GO:0010189: vitamin E biosynthetic process	2.74E-03
61	GO:0009854: oxidative photosynthetic carbon pathway	2.74E-03
62	GO:0006633: fatty acid biosynthetic process	3.43E-03
63	GO:0009642: response to light intensity	3.74E-03
64	GO:0009704: de-etiolation	3.74E-03
65	GO:0006002: fructose 6-phosphate metabolic process	4.29E-03
66	GO:0019430: removal of superoxide radicals	4.29E-03
67	GO:0046686: response to cadmium ion	4.51E-03
68	GO:0019432: triglyceride biosynthetic process	4.85E-03
69	GO:0090333: regulation of stomatal closure	4.85E-03
70	GO:0006783: heme biosynthetic process	4.85E-03
71	GO:0006754: ATP biosynthetic process	4.85E-03
72	GO:0010205: photoinhibition	5.44E-03
73	GO:0006779: porphyrin-containing compound biosynthetic process	5.44E-03
74	GO:0009641: shade avoidance	6.06E-03
75	GO:0006782: protoporphyrinogen IX biosynthetic process	6.06E-03
76	GO:0010114: response to red light	6.43E-03
77	GO:0006415: translational termination	6.69E-03
78	GO:0043085: positive regulation of catalytic activity	6.69E-03
79	GO:0018119: peptidyl-cysteine S-nitrosylation	6.69E-03
80	GO:0009658: chloroplast organization	6.74E-03
81	GO:0006790: sulfur compound metabolic process	7.36E-03
82	GO:0016024: CDP-diacylglycerol biosynthetic process	7.36E-03
83	GO:0005986: sucrose biosynthetic process	8.04E-03
84	GO:0006108: malate metabolic process	8.04E-03
85	GO:0006006: glucose metabolic process	8.04E-03
86	GO:0006364: rRNA processing	8.67E-03
87	GO:0009266: response to temperature stimulus	8.75E-03
88	GO:0010223: secondary shoot formation	8.75E-03
89	GO:0080167: response to karrikin	8.86E-03
90	GO:0046854: phosphatidylinositol phosphorylation	9.48E-03
91	GO:0005985: sucrose metabolic process	9.48E-03
92	GO:0006869: lipid transport	1.25E-02
93	GO:0061077: chaperone-mediated protein folding	1.26E-02
94	GO:0016226: iron-sulfur cluster assembly	1.34E-02
95	GO:0030433: ubiquitin-dependent ERAD pathway	1.34E-02
96	GO:0032259: methylation	1.38E-02
97	GO:0070417: cellular response to cold	1.61E-02
98	GO:0000413: protein peptidyl-prolyl isomerization	1.70E-02
99	GO:0071472: cellular response to salt stress	1.79E-02
100	GO:0006662: glycerol ether metabolic process	1.79E-02
101	GO:0015986: ATP synthesis coupled proton transport	1.88E-02
102	GO:0010193: response to ozone	2.08E-02
103	GO:0042128: nitrate assimilation	2.92E-02
104	GO:0009416: response to light stimulus	2.99E-02
105	GO:0016311: dephosphorylation	3.15E-02
106	GO:0009817: defense response to fungus, incompatible interaction	3.27E-02
107	GO:0018298: protein-chromophore linkage	3.27E-02
108	GO:0010218: response to far red light	3.50E-02
109	GO:0009409: response to cold	3.52E-02
110	GO:0009631: cold acclimation	3.62E-02
111	GO:0009637: response to blue light	3.86E-02
112	GO:0009853: photorespiration	3.86E-02
113	GO:0006099: tricarboxylic acid cycle	3.99E-02
114	GO:0034599: cellular response to oxidative stress	3.99E-02
115	GO:0005975: carbohydrate metabolic process	4.15E-02
116	GO:0006839: mitochondrial transport	4.24E-02
117	GO:0006631: fatty acid metabolic process	4.37E-02
118	GO:0000209: protein polyubiquitination	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
4	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
5	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
6	GO:0008887: glycerate kinase activity	0.00E+00
7	GO:0045550: geranylgeranyl reductase activity	0.00E+00
8	GO:0019843: rRNA binding	7.09E-09
9	GO:0005528: FK506 binding	1.30E-06
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.40E-06
11	GO:0003735: structural constituent of ribosome	8.40E-06
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.23E-05
13	GO:0004332: fructose-bisphosphate aldolase activity	7.64E-05
14	GO:0048038: quinone binding	1.97E-04
15	GO:0005344: oxygen transporter activity	2.11E-04
16	GO:0035671: enone reductase activity	2.11E-04
17	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.11E-04
18	GO:0008184: glycogen phosphorylase activity	2.11E-04
19	GO:0045485: omega-6 fatty acid desaturase activity	2.11E-04
20	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.11E-04
21	GO:0004645: phosphorylase activity	2.11E-04
22	GO:0009374: biotin binding	2.11E-04
23	GO:0008883: glutamyl-tRNA reductase activity	4.71E-04
24	GO:0047746: chlorophyllase activity	4.71E-04
25	GO:0042389: omega-3 fatty acid desaturase activity	4.71E-04
26	GO:0004618: phosphoglycerate kinase activity	4.71E-04
27	GO:0003839: gamma-glutamylcyclotransferase activity	4.71E-04
28	GO:0052832: inositol monophosphate 3-phosphatase activity	4.71E-04
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.71E-04
30	GO:0008934: inositol monophosphate 1-phosphatase activity	4.71E-04
31	GO:0052833: inositol monophosphate 4-phosphatase activity	4.71E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.71E-04
33	GO:0008967: phosphoglycolate phosphatase activity	4.71E-04
34	GO:0018708: thiol S-methyltransferase activity	4.71E-04
35	GO:0004565: beta-galactosidase activity	5.67E-04
36	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.67E-04
37	GO:0005310: dicarboxylic acid transmembrane transporter activity	7.67E-04
38	GO:0050734: hydroxycinnamoyltransferase activity	7.67E-04
39	GO:0031409: pigment binding	7.93E-04
40	GO:0017077: oxidative phosphorylation uncoupler activity	1.09E-03
41	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.09E-03
42	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.09E-03
43	GO:0016851: magnesium chelatase activity	1.09E-03
44	GO:0016149: translation release factor activity, codon specific	1.09E-03
45	GO:0003989: acetyl-CoA carboxylase activity	1.85E-03
46	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.28E-03
47	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.28E-03
48	GO:0004784: superoxide dismutase activity	2.28E-03
49	GO:0016615: malate dehydrogenase activity	2.28E-03
50	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.74E-03
51	GO:0030060: L-malate dehydrogenase activity	2.74E-03
52	GO:0016168: chlorophyll binding	3.20E-03
53	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.29E-03
54	GO:0003747: translation release factor activity	4.85E-03
55	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.44E-03
56	GO:0050661: NADP binding	5.68E-03
57	GO:0030234: enzyme regulator activity	6.06E-03
58	GO:0008047: enzyme activator activity	6.06E-03
59	GO:0008168: methyltransferase activity	6.42E-03
60	GO:0047372: acylglycerol lipase activity	6.69E-03
61	GO:0051537: 2 iron, 2 sulfur cluster binding	6.95E-03
62	GO:0031072: heat shock protein binding	8.04E-03
63	GO:0016491: oxidoreductase activity	1.07E-02
64	GO:0051536: iron-sulfur cluster binding	1.10E-02
65	GO:0003727: single-stranded RNA binding	1.52E-02
66	GO:0047134: protein-disulfide reductase activity	1.61E-02
67	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.79E-02
68	GO:0004791: thioredoxin-disulfide reductase activity	1.88E-02
69	GO:0016853: isomerase activity	1.88E-02
70	GO:0005509: calcium ion binding	2.00E-02
71	GO:0008289: lipid binding	2.21E-02
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.28E-02
73	GO:0016791: phosphatase activity	2.38E-02
74	GO:0004222: metalloendopeptidase activity	3.50E-02
75	GO:0003746: translation elongation factor activity	3.86E-02
76	GO:0003993: acid phosphatase activity	3.99E-02
77	GO:0030246: carbohydrate binding	4.32E-02
78	GO:0004185: serine-type carboxypeptidase activity	4.63E-02
79	GO:0043621: protein self-association	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009507: chloroplast	5.75E-62
5	GO:0009535: chloroplast thylakoid membrane	1.27E-43
6	GO:0009534: chloroplast thylakoid	9.76E-40
7	GO:0009941: chloroplast envelope	6.77E-32
8	GO:0009579: thylakoid	1.59E-28
9	GO:0009570: chloroplast stroma	4.40E-20
10	GO:0009543: chloroplast thylakoid lumen	5.61E-20
11	GO:0031977: thylakoid lumen	1.73E-19
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.44E-15
13	GO:0005840: ribosome	4.10E-07
14	GO:0030095: chloroplast photosystem II	5.99E-07
15	GO:0009654: photosystem II oxygen evolving complex	1.64E-06
16	GO:0031969: chloroplast membrane	4.92E-06
17	GO:0019898: extrinsic component of membrane	8.52E-06
18	GO:0048046: apoplast	9.86E-05
19	GO:0010319: stromule	2.79E-04
20	GO:0009706: chloroplast inner membrane	2.87E-04
21	GO:0010287: plastoglobule	3.78E-04
22	GO:0031357: integral component of chloroplast inner membrane	4.71E-04
23	GO:0030076: light-harvesting complex	7.14E-04
24	GO:0010007: magnesium chelatase complex	7.67E-04
25	GO:0009317: acetyl-CoA carboxylase complex	7.67E-04
26	GO:0015935: small ribosomal subunit	1.05E-03
27	GO:0005960: glycine cleavage complex	1.09E-03
28	GO:0009544: chloroplast ATP synthase complex	1.45E-03
29	GO:0009523: photosystem II	1.97E-03
30	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.28E-03
31	GO:0009533: chloroplast stromal thylakoid	3.23E-03
32	GO:0015934: large ribosomal subunit	4.55E-03
33	GO:0005763: mitochondrial small ribosomal subunit	4.85E-03
34	GO:0032040: small-subunit processome	7.36E-03
35	GO:0043234: protein complex	1.02E-02
36	GO:0042651: thylakoid membrane	1.18E-02
37	GO:0009522: photosystem I	1.88E-02
38	GO:0016020: membrane	3.82E-02