Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G08550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046471: phosphatidylglycerol metabolic process0.00E+00
2GO:0015717: triose phosphate transport0.00E+00
3GO:1905157: positive regulation of photosynthesis0.00E+00
4GO:0006849: plasma membrane pyruvate transport0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
8GO:0016118: carotenoid catabolic process0.00E+00
9GO:0015995: chlorophyll biosynthetic process5.42E-08
10GO:0009773: photosynthetic electron transport in photosystem I3.37E-07
11GO:0015979: photosynthesis1.28E-05
12GO:0009643: photosynthetic acclimation9.17E-05
13GO:1901259: chloroplast rRNA processing1.27E-04
14GO:0009642: response to light intensity2.12E-04
15GO:0019276: UDP-N-acetylgalactosamine metabolic process2.36E-04
16GO:0034337: RNA folding2.36E-04
17GO:0006047: UDP-N-acetylglucosamine metabolic process2.36E-04
18GO:0080112: seed growth2.36E-04
19GO:0005980: glycogen catabolic process2.36E-04
20GO:0007093: mitotic cell cycle checkpoint2.36E-04
21GO:0009090: homoserine biosynthetic process2.36E-04
22GO:1905039: carboxylic acid transmembrane transport2.36E-04
23GO:1905200: gibberellic acid transmembrane transport2.36E-04
24GO:0032544: plastid translation2.63E-04
25GO:0009657: plastid organization2.63E-04
26GO:0055114: oxidation-reduction process2.73E-04
27GO:0006783: heme biosynthetic process3.18E-04
28GO:0005982: starch metabolic process3.78E-04
29GO:0006782: protoporphyrinogen IX biosynthetic process4.42E-04
30GO:0043085: positive regulation of catalytic activity5.11E-04
31GO:0051304: chromosome separation5.24E-04
32GO:0010353: response to trehalose5.24E-04
33GO:0016121: carotene catabolic process5.24E-04
34GO:0030388: fructose 1,6-bisphosphate metabolic process5.24E-04
35GO:0006898: receptor-mediated endocytosis5.24E-04
36GO:0016124: xanthophyll catabolic process5.24E-04
37GO:0010207: photosystem II assembly7.46E-04
38GO:0034599: cellular response to oxidative stress8.09E-04
39GO:0006518: peptide metabolic process8.52E-04
40GO:0035436: triose phosphate transmembrane transport8.52E-04
41GO:0006696: ergosterol biosynthetic process8.52E-04
42GO:0006000: fructose metabolic process8.52E-04
43GO:0009405: pathogenesis8.52E-04
44GO:0006048: UDP-N-acetylglucosamine biosynthetic process8.52E-04
45GO:0010114: response to red light1.05E-03
46GO:0009768: photosynthesis, light harvesting in photosystem I1.12E-03
47GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.21E-03
48GO:0009067: aspartate family amino acid biosynthetic process1.21E-03
49GO:1902358: sulfate transmembrane transport1.21E-03
50GO:0045338: farnesyl diphosphate metabolic process1.21E-03
51GO:0006020: inositol metabolic process1.21E-03
52GO:0071484: cellular response to light intensity1.21E-03
53GO:0009152: purine ribonucleotide biosynthetic process1.21E-03
54GO:0010601: positive regulation of auxin biosynthetic process1.21E-03
55GO:0046653: tetrahydrofolate metabolic process1.21E-03
56GO:0009052: pentose-phosphate shunt, non-oxidative branch1.21E-03
57GO:0061077: chaperone-mediated protein folding1.23E-03
58GO:0006021: inositol biosynthetic process1.62E-03
59GO:0071483: cellular response to blue light1.62E-03
60GO:0010021: amylopectin biosynthetic process1.62E-03
61GO:0009765: photosynthesis, light harvesting1.62E-03
62GO:0006109: regulation of carbohydrate metabolic process1.62E-03
63GO:0015713: phosphoglycerate transport1.62E-03
64GO:0006662: glycerol ether metabolic process2.00E-03
65GO:0006656: phosphatidylcholine biosynthetic process2.07E-03
66GO:0006564: L-serine biosynthetic process2.07E-03
67GO:0009904: chloroplast accumulation movement2.07E-03
68GO:0019252: starch biosynthetic process2.31E-03
69GO:0010190: cytochrome b6f complex assembly2.55E-03
70GO:0046855: inositol phosphate dephosphorylation2.55E-03
71GO:0010304: PSII associated light-harvesting complex II catabolic process2.55E-03
72GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.55E-03
73GO:0000470: maturation of LSU-rRNA2.55E-03
74GO:1902456: regulation of stomatal opening2.55E-03
75GO:0009903: chloroplast avoidance movement3.06E-03
76GO:0009854: oxidative photosynthetic carbon pathway3.06E-03
77GO:0009088: threonine biosynthetic process3.06E-03
78GO:0009955: adaxial/abaxial pattern specification3.06E-03
79GO:0010027: thylakoid membrane organization3.56E-03
80GO:0009645: response to low light intensity stimulus3.61E-03
81GO:0009610: response to symbiotic fungus3.61E-03
82GO:0009772: photosynthetic electron transport in photosystem II3.61E-03
83GO:0048437: floral organ development3.61E-03
84GO:0010196: nonphotochemical quenching3.61E-03
85GO:0008272: sulfate transport3.61E-03
86GO:0009769: photosynthesis, light harvesting in photosystem II3.61E-03
87GO:0006353: DNA-templated transcription, termination4.19E-03
88GO:0052543: callose deposition in cell wall4.19E-03
89GO:0005978: glycogen biosynthetic process4.19E-03
90GO:0006002: fructose 6-phosphate metabolic process4.79E-03
91GO:0015996: chlorophyll catabolic process4.79E-03
92GO:0006754: ATP biosynthetic process5.43E-03
93GO:0009821: alkaloid biosynthetic process5.43E-03
94GO:0010206: photosystem II repair5.43E-03
95GO:0009853: photorespiration5.87E-03
96GO:0009086: methionine biosynthetic process6.09E-03
97GO:0009641: shade avoidance6.78E-03
98GO:0072593: reactive oxygen species metabolic process7.50E-03
99GO:0006415: translational termination7.50E-03
100GO:0009089: lysine biosynthetic process via diaminopimelate7.50E-03
101GO:0015770: sucrose transport7.50E-03
102GO:0006790: sulfur compound metabolic process8.25E-03
103GO:0005983: starch catabolic process8.25E-03
104GO:0016024: CDP-diacylglycerol biosynthetic process8.25E-03
105GO:0018107: peptidyl-threonine phosphorylation9.02E-03
106GO:0006094: gluconeogenesis9.02E-03
107GO:0005986: sucrose biosynthetic process9.02E-03
108GO:0030048: actin filament-based movement9.02E-03
109GO:0019253: reductive pentose-phosphate cycle9.82E-03
110GO:0007015: actin filament organization9.82E-03
111GO:0010223: secondary shoot formation9.82E-03
112GO:0010143: cutin biosynthetic process9.82E-03
113GO:0046854: phosphatidylinositol phosphorylation1.06E-02
114GO:0009901: anther dehiscence1.06E-02
115GO:0005985: sucrose metabolic process1.06E-02
116GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.14E-02
117GO:0006636: unsaturated fatty acid biosynthetic process1.15E-02
118GO:0006418: tRNA aminoacylation for protein translation1.32E-02
119GO:0045454: cell redox homeostasis1.37E-02
120GO:0016114: terpenoid biosynthetic process1.42E-02
121GO:0009269: response to desiccation1.42E-02
122GO:0009553: embryo sac development1.42E-02
123GO:0030433: ubiquitin-dependent ERAD pathway1.51E-02
124GO:0016226: iron-sulfur cluster assembly1.51E-02
125GO:0009306: protein secretion1.70E-02
126GO:0006810: transport1.72E-02
127GO:0016117: carotenoid biosynthetic process1.80E-02
128GO:0009058: biosynthetic process1.93E-02
129GO:0015986: ATP synthesis coupled proton transport2.12E-02
130GO:0006814: sodium ion transport2.12E-02
131GO:0009556: microsporogenesis2.23E-02
132GO:0032502: developmental process2.45E-02
133GO:0009630: gravitropism2.45E-02
134GO:1901657: glycosyl compound metabolic process2.56E-02
135GO:0016126: sterol biosynthetic process3.04E-02
136GO:0009735: response to cytokinin3.28E-02
137GO:0006906: vesicle fusion3.29E-02
138GO:0018298: protein-chromophore linkage3.67E-02
139GO:0048481: plant ovule development3.67E-02
140GO:0009813: flavonoid biosynthetic process3.80E-02
141GO:0009658: chloroplast organization3.90E-02
142GO:0010218: response to far red light3.93E-02
143GO:0042254: ribosome biogenesis3.98E-02
144GO:0016310: phosphorylation4.06E-02
145GO:0009631: cold acclimation4.07E-02
146GO:0009637: response to blue light4.34E-02
147GO:0009409: response to cold4.45E-02
148GO:0006887: exocytosis4.90E-02
RankGO TermAdjusted P value
1GO:0080082: esculin beta-glucosidase activity0.00E+00
2GO:0046408: chlorophyll synthetase activity0.00E+00
3GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
4GO:0047668: amygdalin beta-glucosidase activity0.00E+00
5GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
6GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
7GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0004567: beta-mannosidase activity0.00E+00
10GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0008887: glycerate kinase activity0.00E+00
13GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
14GO:0004645: phosphorylase activity2.36E-04
15GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity2.36E-04
16GO:0034256: chlorophyll(ide) b reductase activity2.36E-04
17GO:0045486: naringenin 3-dioxygenase activity2.36E-04
18GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity2.36E-04
19GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.36E-04
20GO:0080079: cellobiose glucosidase activity2.36E-04
21GO:1905201: gibberellin transmembrane transporter activity2.36E-04
22GO:0050521: alpha-glucan, water dikinase activity2.36E-04
23GO:0008184: glycogen phosphorylase activity2.36E-04
24GO:0016491: oxidoreductase activity3.96E-04
25GO:0008047: enzyme activator activity4.42E-04
26GO:0008967: phosphoglycolate phosphatase activity5.24E-04
27GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.24E-04
28GO:0000234: phosphoethanolamine N-methyltransferase activity5.24E-04
29GO:0004617: phosphoglycerate dehydrogenase activity5.24E-04
30GO:0052832: inositol monophosphate 3-phosphatase activity5.24E-04
31GO:0033201: alpha-1,4-glucan synthase activity5.24E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.24E-04
33GO:0008934: inositol monophosphate 1-phosphatase activity5.24E-04
34GO:0018708: thiol S-methyltransferase activity5.24E-04
35GO:0003844: 1,4-alpha-glucan branching enzyme activity5.24E-04
36GO:0052833: inositol monophosphate 4-phosphatase activity5.24E-04
37GO:0004412: homoserine dehydrogenase activity5.24E-04
38GO:0016630: protochlorophyllide reductase activity5.24E-04
39GO:0019843: rRNA binding5.30E-04
40GO:0004751: ribose-5-phosphate isomerase activity8.52E-04
41GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.52E-04
42GO:0071917: triose-phosphate transmembrane transporter activity8.52E-04
43GO:0008864: formyltetrahydrofolate deformylase activity8.52E-04
44GO:0010277: chlorophyllide a oxygenase [overall] activity8.52E-04
45GO:0043169: cation binding8.52E-04
46GO:0004373: glycogen (starch) synthase activity8.52E-04
47GO:0002161: aminoacyl-tRNA editing activity8.52E-04
48GO:0090729: toxin activity8.52E-04
49GO:0050833: pyruvate transmembrane transporter activity8.52E-04
50GO:0031409: pigment binding9.25E-04
51GO:0005528: FK506 binding1.02E-03
52GO:0016851: magnesium chelatase activity1.21E-03
53GO:0016149: translation release factor activity, codon specific1.21E-03
54GO:0022890: inorganic cation transmembrane transporter activity1.21E-03
55GO:0008508: bile acid:sodium symporter activity1.21E-03
56GO:0004072: aspartate kinase activity1.21E-03
57GO:0019201: nucleotide kinase activity1.21E-03
58GO:0015120: phosphoglycerate transmembrane transporter activity1.62E-03
59GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.62E-03
60GO:0009011: starch synthase activity1.62E-03
61GO:0047134: protein-disulfide reductase activity1.72E-03
62GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.07E-03
63GO:0003959: NADPH dehydrogenase activity2.07E-03
64GO:0004791: thioredoxin-disulfide reductase activity2.15E-03
65GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.55E-03
66GO:0004629: phospholipase C activity2.55E-03
67GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.55E-03
68GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.81E-03
69GO:0004435: phosphatidylinositol phospholipase C activity3.06E-03
70GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.06E-03
71GO:0004017: adenylate kinase activity3.06E-03
72GO:0016597: amino acid binding3.36E-03
73GO:0016168: chlorophyll binding3.76E-03
74GO:0008271: secondary active sulfate transmembrane transporter activity4.79E-03
75GO:0004222: metalloendopeptidase activity5.11E-03
76GO:0003747: translation release factor activity5.43E-03
77GO:0071949: FAD binding5.43E-03
78GO:0016844: strictosidine synthase activity6.09E-03
79GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.09E-03
80GO:0042626: ATPase activity, coupled to transmembrane movement of substances6.46E-03
81GO:0030234: enzyme regulator activity6.78E-03
82GO:0008559: xenobiotic-transporting ATPase activity7.50E-03
83GO:0047372: acylglycerol lipase activity7.50E-03
84GO:0015386: potassium:proton antiporter activity7.50E-03
85GO:0008515: sucrose transmembrane transporter activity7.50E-03
86GO:0015116: sulfate transmembrane transporter activity8.25E-03
87GO:0000049: tRNA binding8.25E-03
88GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.84E-03
89GO:0004022: alcohol dehydrogenase (NAD) activity9.02E-03
90GO:0031072: heat shock protein binding9.02E-03
91GO:0003725: double-stranded RNA binding9.02E-03
92GO:0003774: motor activity9.82E-03
93GO:0051119: sugar transmembrane transporter activity1.06E-02
94GO:0051536: iron-sulfur cluster binding1.24E-02
95GO:0031418: L-ascorbic acid binding1.24E-02
96GO:0004857: enzyme inhibitor activity1.24E-02
97GO:0015079: potassium ion transmembrane transporter activity1.32E-02
98GO:0015035: protein disulfide oxidoreductase activity1.50E-02
99GO:0016779: nucleotidyltransferase activity1.51E-02
100GO:0003727: single-stranded RNA binding1.70E-02
101GO:0005524: ATP binding1.71E-02
102GO:0004812: aminoacyl-tRNA ligase activity1.80E-02
103GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.88E-02
104GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.01E-02
105GO:0015299: solute:proton antiporter activity2.12E-02
106GO:0048038: quinone binding2.34E-02
107GO:0016791: phosphatase activity2.68E-02
108GO:0008237: metallopeptidase activity2.80E-02
109GO:0003735: structural constituent of ribosome2.87E-02
110GO:0003743: translation initiation factor activity2.95E-02
111GO:0102483: scopolin beta-glucosidase activity3.41E-02
112GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.67E-02
113GO:0003746: translation elongation factor activity4.34E-02
114GO:0003993: acid phosphatase activity4.48E-02
115GO:0008422: beta-glucosidase activity4.62E-02
116GO:0000149: SNARE binding4.62E-02
117GO:0004712: protein serine/threonine/tyrosine kinase activity4.62E-02
118GO:0050661: NADP binding4.76E-02
119GO:0004497: monooxygenase activity4.82E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast5.02E-43
2GO:0009534: chloroplast thylakoid4.79E-26
3GO:0009535: chloroplast thylakoid membrane7.03E-23
4GO:0009570: chloroplast stroma5.14E-18
5GO:0009941: chloroplast envelope1.31E-13
6GO:0031969: chloroplast membrane6.67E-07
7GO:0009579: thylakoid5.37E-06
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.86E-06
9GO:0009543: chloroplast thylakoid lumen6.80E-05
10GO:0042651: thylakoid membrane7.67E-05
11GO:0009501: amyloplast2.12E-04
12GO:0030076: light-harvesting complex8.34E-04
13GO:0010007: magnesium chelatase complex8.52E-04
14GO:0031977: thylakoid lumen9.48E-04
15GO:0009544: chloroplast ATP synthase complex1.62E-03
16GO:0009517: PSII associated light-harvesting complex II1.62E-03
17GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.55E-03
18GO:0005840: ribosome2.86E-03
19GO:0010287: plastoglobule2.95E-03
20GO:0009840: chloroplastic endopeptidase Clp complex3.06E-03
21GO:0031982: vesicle4.19E-03
22GO:0005763: mitochondrial small ribosomal subunit5.43E-03
23GO:0031901: early endosome membrane5.43E-03
24GO:0016459: myosin complex6.78E-03
25GO:0032040: small-subunit processome8.25E-03
26GO:0030095: chloroplast photosystem II9.82E-03
27GO:0009654: photosystem II oxygen evolving complex1.32E-02
28GO:0015935: small ribosomal subunit1.42E-02
29GO:0009532: plastid stroma1.42E-02
30GO:0005623: cell1.88E-02
31GO:0009522: photosystem I2.12E-02
32GO:0009523: photosystem II2.23E-02
33GO:0019898: extrinsic component of membrane2.23E-02
34GO:0010319: stromule2.80E-02
35GO:0016020: membrane3.58E-02
36GO:0000325: plant-type vacuole4.07E-02
37GO:0031201: SNARE complex4.90E-02
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Gene type



Gene DE type