co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G07440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0010203: response to very low fluence red light stimulus	0.00E+00
3	GO:0007037: vacuolar phosphate transport	0.00E+00
4	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0008298: intracellular mRNA localization	0.00E+00
11	GO:0071474: cellular hyperosmotic response	0.00E+00
12	GO:0006399: tRNA metabolic process	0.00E+00
13	GO:0071482: cellular response to light stimulus	6.87E-08
14	GO:2001141: regulation of RNA biosynthetic process	8.19E-08
15	GO:0006352: DNA-templated transcription, initiation	3.60E-07
16	GO:0045038: protein import into chloroplast thylakoid membrane	5.44E-07
17	GO:0009658: chloroplast organization	4.78E-05
18	GO:0010190: cytochrome b6f complex assembly	9.47E-05
19	GO:0009645: response to low light intensity stimulus	1.72E-04
20	GO:0015969: guanosine tetraphosphate metabolic process	2.41E-04
21	GO:0009443: pyridoxal 5'-phosphate salvage	2.41E-04
22	GO:0031426: polycistronic mRNA processing	2.41E-04
23	GO:0051775: response to redox state	2.41E-04
24	GO:0000481: maturation of 5S rRNA	2.41E-04
25	GO:0015798: myo-inositol transport	2.41E-04
26	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.41E-04
27	GO:0043087: regulation of GTPase activity	2.41E-04
28	GO:0071461: cellular response to redox state	2.41E-04
29	GO:1902458: positive regulation of stomatal opening	2.41E-04
30	GO:0034337: RNA folding	2.41E-04
31	GO:0048507: meristem development	3.27E-04
32	GO:0051262: protein tetramerization	5.34E-04
33	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.34E-04
34	GO:0046741: transport of virus in host, tissue to tissue	5.34E-04
35	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	5.34E-04
36	GO:0080005: photosystem stoichiometry adjustment	5.34E-04
37	GO:0000256: allantoin catabolic process	5.34E-04
38	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.34E-04
39	GO:0000913: preprophase band assembly	8.68E-04
40	GO:0031022: nuclear migration along microfilament	8.68E-04
41	GO:0010136: ureide catabolic process	8.68E-04
42	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.68E-04
43	GO:0017006: protein-tetrapyrrole linkage	8.68E-04
44	GO:0010623: programmed cell death involved in cell development	8.68E-04
45	GO:0005977: glycogen metabolic process	8.68E-04
46	GO:0006107: oxaloacetate metabolic process	1.24E-03
47	GO:0010239: chloroplast mRNA processing	1.24E-03
48	GO:0009584: detection of visible light	1.24E-03
49	GO:0009226: nucleotide-sugar biosynthetic process	1.24E-03
50	GO:0006145: purine nucleobase catabolic process	1.24E-03
51	GO:0043572: plastid fission	1.24E-03
52	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.24E-03
53	GO:0009306: protein secretion	1.63E-03
54	GO:0051322: anaphase	1.65E-03
55	GO:0006661: phosphatidylinositol biosynthetic process	1.65E-03
56	GO:0006109: regulation of carbohydrate metabolic process	1.65E-03
57	GO:0031122: cytoplasmic microtubule organization	1.65E-03
58	GO:0010508: positive regulation of autophagy	1.65E-03
59	GO:0071483: cellular response to blue light	1.65E-03
60	GO:0006734: NADH metabolic process	1.65E-03
61	GO:0010021: amylopectin biosynthetic process	1.65E-03
62	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.77E-03
63	GO:0005975: carbohydrate metabolic process	1.97E-03
64	GO:0006662: glycerol ether metabolic process	2.06E-03
65	GO:0080110: sporopollenin biosynthetic process	2.11E-03
66	GO:0009904: chloroplast accumulation movement	2.11E-03
67	GO:0007018: microtubule-based movement	2.21E-03
68	GO:0008654: phospholipid biosynthetic process	2.37E-03
69	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.60E-03
70	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.60E-03
71	GO:0050665: hydrogen peroxide biosynthetic process	2.60E-03
72	GO:0016032: viral process	2.71E-03
73	GO:0032502: developmental process	2.71E-03
74	GO:0009612: response to mechanical stimulus	3.12E-03
75	GO:0017148: negative regulation of translation	3.12E-03
76	GO:0009903: chloroplast avoidance movement	3.12E-03
77	GO:0010189: vitamin E biosynthetic process	3.12E-03
78	GO:0009854: oxidative photosynthetic carbon pathway	3.12E-03
79	GO:0000910: cytokinesis	3.46E-03
80	GO:0009395: phospholipid catabolic process	3.68E-03
81	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.68E-03
82	GO:0006400: tRNA modification	3.68E-03
83	GO:0010161: red light signaling pathway	3.68E-03
84	GO:0042255: ribosome assembly	4.27E-03
85	GO:0006353: DNA-templated transcription, termination	4.27E-03
86	GO:0009690: cytokinin metabolic process	4.27E-03
87	GO:0006605: protein targeting	4.27E-03
88	GO:0032508: DNA duplex unwinding	4.27E-03
89	GO:2000070: regulation of response to water deprivation	4.27E-03
90	GO:0010492: maintenance of shoot apical meristem identity	4.27E-03
91	GO:0006413: translational initiation	4.52E-03
92	GO:0018298: protein-chromophore linkage	4.77E-03
93	GO:0010204: defense response signaling pathway, resistance gene-independent	4.89E-03
94	GO:0017004: cytochrome complex assembly	4.89E-03
95	GO:0046685: response to arsenic-containing substance	5.54E-03
96	GO:0009821: alkaloid biosynthetic process	5.54E-03
97	GO:0010206: photosystem II repair	5.54E-03
98	GO:0006754: ATP biosynthetic process	5.54E-03
99	GO:0000373: Group II intron splicing	5.54E-03
100	GO:0009638: phototropism	6.21E-03
101	GO:0034599: cellular response to oxidative stress	6.32E-03
102	GO:0019538: protein metabolic process	6.92E-03
103	GO:0043069: negative regulation of programmed cell death	6.92E-03
104	GO:0019684: photosynthesis, light reaction	7.65E-03
105	GO:0009089: lysine biosynthetic process via diaminopimelate	7.65E-03
106	GO:0043085: positive regulation of catalytic activity	7.65E-03
107	GO:0009684: indoleacetic acid biosynthetic process	7.65E-03
108	GO:0042546: cell wall biogenesis	8.11E-03
109	GO:0045037: protein import into chloroplast stroma	8.41E-03
110	GO:0009644: response to high light intensity	8.43E-03
111	GO:0006108: malate metabolic process	9.20E-03
112	GO:0009767: photosynthetic electron transport chain	9.20E-03
113	GO:0010207: photosystem II assembly	1.00E-02
114	GO:0010020: chloroplast fission	1.00E-02
115	GO:0009585: red, far-red light phototransduction	1.05E-02
116	GO:0042343: indole glucosinolate metabolic process	1.09E-02
117	GO:0090351: seedling development	1.09E-02
118	GO:0006833: water transport	1.17E-02
119	GO:0006096: glycolytic process	1.25E-02
120	GO:0055114: oxidation-reduction process	1.28E-02
121	GO:0015979: photosynthesis	1.34E-02
122	GO:0051302: regulation of cell division	1.35E-02
123	GO:0009768: photosynthesis, light harvesting in photosystem I	1.35E-02
124	GO:0031408: oxylipin biosynthetic process	1.45E-02
125	GO:0098542: defense response to other organism	1.45E-02
126	GO:0010431: seed maturation	1.45E-02
127	GO:0031348: negative regulation of defense response	1.54E-02
128	GO:0010584: pollen exine formation	1.74E-02
129	GO:0019722: calcium-mediated signaling	1.74E-02
130	GO:0010089: xylem development	1.74E-02
131	GO:0006810: transport	1.81E-02
132	GO:0006629: lipid metabolic process	1.86E-02
133	GO:0008033: tRNA processing	1.95E-02
134	GO:0034220: ion transmembrane transport	1.95E-02
135	GO:0045489: pectin biosynthetic process	2.05E-02
136	GO:0048868: pollen tube development	2.05E-02
137	GO:0007059: chromosome segregation	2.16E-02
138	GO:0009791: post-embryonic development	2.27E-02
139	GO:0019252: starch biosynthetic process	2.27E-02
140	GO:0000302: response to reactive oxygen species	2.38E-02
141	GO:0010583: response to cyclopentenone	2.50E-02
142	GO:0009630: gravitropism	2.50E-02
143	GO:0007267: cell-cell signaling	2.85E-02
144	GO:0071555: cell wall organization	3.00E-02
145	GO:0016126: sterol biosynthetic process	3.10E-02
146	GO:0010027: thylakoid membrane organization	3.10E-02
147	GO:0010029: regulation of seed germination	3.23E-02
148	GO:0009737: response to abscisic acid	3.37E-02
149	GO:0010411: xyloglucan metabolic process	3.48E-02
150	GO:0016311: dephosphorylation	3.61E-02
151	GO:0010218: response to far red light	4.01E-02
152	GO:0006970: response to osmotic stress	4.32E-02
153	GO:0045087: innate immune response	4.43E-02
154	GO:0009637: response to blue light	4.43E-02
155	GO:0006099: tricarboxylic acid cycle	4.57E-02
156	GO:0009409: response to cold	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
4	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
5	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0050613: delta14-sterol reductase activity	0.00E+00
8	GO:0010276: phytol kinase activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0016987: sigma factor activity	5.67E-10
11	GO:0001053: plastid sigma factor activity	5.67E-10
12	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.20E-04
13	GO:0005227: calcium activated cation channel activity	2.41E-04
14	GO:0080132: fatty acid alpha-hydroxylase activity	2.41E-04
15	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.41E-04
16	GO:0008568: microtubule-severing ATPase activity	2.41E-04
17	GO:0008746: NAD(P)+ transhydrogenase activity	2.41E-04
18	GO:0004328: formamidase activity	2.41E-04
19	GO:0031516: far-red light photoreceptor activity	2.41E-04
20	GO:0019156: isoamylase activity	5.34E-04
21	GO:0003988: acetyl-CoA C-acyltransferase activity	5.34E-04
22	GO:0004802: transketolase activity	5.34E-04
23	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.34E-04
24	GO:0048531: beta-1,3-galactosyltransferase activity	5.34E-04
25	GO:0008728: GTP diphosphokinase activity	5.34E-04
26	GO:0005366: myo-inositol:proton symporter activity	5.34E-04
27	GO:0004103: choline kinase activity	5.34E-04
28	GO:0080045: quercetin 3'-O-glucosyltransferase activity	5.34E-04
29	GO:0009883: red or far-red light photoreceptor activity	5.34E-04
30	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.34E-04
31	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.67E-04
32	GO:0004180: carboxypeptidase activity	8.68E-04
33	GO:0008020: G-protein coupled photoreceptor activity	8.68E-04
34	GO:0070402: NADPH binding	8.68E-04
35	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.24E-03
36	GO:0048027: mRNA 5'-UTR binding	1.24E-03
37	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.24E-03
38	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.24E-03
39	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.24E-03
40	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.24E-03
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.65E-03
42	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.65E-03
43	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.65E-03
44	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.65E-03
45	GO:0008891: glycolate oxidase activity	1.65E-03
46	GO:0047134: protein-disulfide reductase activity	1.77E-03
47	GO:0004672: protein kinase activity	1.83E-03
48	GO:0008374: O-acyltransferase activity	2.11E-03
49	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.11E-03
50	GO:0004040: amidase activity	2.11E-03
51	GO:0016887: ATPase activity	2.14E-03
52	GO:0004791: thioredoxin-disulfide reductase activity	2.21E-03
53	GO:0048038: quinone binding	2.54E-03
54	GO:0004556: alpha-amylase activity	2.60E-03
55	GO:0004462: lactoylglutathione lyase activity	2.60E-03
56	GO:0016615: malate dehydrogenase activity	2.60E-03
57	GO:0008200: ion channel inhibitor activity	2.60E-03
58	GO:0080046: quercetin 4'-O-glucosyltransferase activity	2.60E-03
59	GO:0004605: phosphatidate cytidylyltransferase activity	2.60E-03
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.89E-03
61	GO:0030060: L-malate dehydrogenase activity	3.12E-03
62	GO:0005261: cation channel activity	3.12E-03
63	GO:0004871: signal transducer activity	3.42E-03
64	GO:0015144: carbohydrate transmembrane transporter activity	4.12E-03
65	GO:0008312: 7S RNA binding	4.27E-03
66	GO:0004033: aldo-keto reductase (NADP) activity	4.27E-03
67	GO:0043022: ribosome binding	4.27E-03
68	GO:0008236: serine-type peptidase activity	4.53E-03
69	GO:0016491: oxidoreductase activity	4.74E-03
70	GO:0005351: sugar:proton symporter activity	4.80E-03
71	GO:0008017: microtubule binding	5.23E-03
72	GO:0004222: metalloendopeptidase activity	5.26E-03
73	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.54E-03
74	GO:0004743: pyruvate kinase activity	6.21E-03
75	GO:0030955: potassium ion binding	6.21E-03
76	GO:0016844: strictosidine synthase activity	6.21E-03
77	GO:0003993: acid phosphatase activity	6.32E-03
78	GO:0005525: GTP binding	6.49E-03
79	GO:0042802: identical protein binding	6.70E-03
80	GO:0008047: enzyme activator activity	6.92E-03
81	GO:0004673: protein histidine kinase activity	6.92E-03
82	GO:0004565: beta-galactosidase activity	9.20E-03
83	GO:0008081: phosphoric diester hydrolase activity	9.20E-03
84	GO:0031072: heat shock protein binding	9.20E-03
85	GO:0000155: phosphorelay sensor kinase activity	9.20E-03
86	GO:0003824: catalytic activity	1.10E-02
87	GO:0003777: microtubule motor activity	1.17E-02
88	GO:0031409: pigment binding	1.17E-02
89	GO:0004857: enzyme inhibitor activity	1.26E-02
90	GO:0016874: ligase activity	1.41E-02
91	GO:0004176: ATP-dependent peptidase activity	1.45E-02
92	GO:0015035: protein disulfide oxidoreductase activity	1.55E-02
93	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.59E-02
94	GO:0003727: single-stranded RNA binding	1.74E-02
95	GO:0003924: GTPase activity	1.86E-02
96	GO:0016829: lyase activity	2.04E-02
97	GO:0008080: N-acetyltransferase activity	2.05E-02
98	GO:0050662: coenzyme binding	2.16E-02
99	GO:0010181: FMN binding	2.16E-02
100	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.38E-02
101	GO:0008237: metallopeptidase activity	2.85E-02
102	GO:0003743: translation initiation factor activity	3.04E-02
103	GO:0015250: water channel activity	3.10E-02
104	GO:0016168: chlorophyll binding	3.23E-02
105	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.48E-02
106	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.75E-02
107	GO:0015238: drug transmembrane transporter activity	3.88E-02
108	GO:0005096: GTPase activator activity	3.88E-02
109	GO:0016788: hydrolase activity, acting on ester bonds	4.09E-02
110	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	8.18E-20
3	GO:0009535: chloroplast thylakoid membrane	1.61E-08
4	GO:0080085: signal recognition particle, chloroplast targeting	2.70E-06
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.29E-06
6	GO:0005773: vacuole	1.64E-05
7	GO:0009941: chloroplast envelope	3.90E-05
8	GO:0009782: photosystem I antenna complex	2.41E-04
9	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.70E-04
10	GO:0009570: chloroplast stroma	4.67E-04
11	GO:0009574: preprophase band	6.81E-04
12	GO:0033281: TAT protein transport complex	8.68E-04
13	GO:0046658: anchored component of plasma membrane	1.37E-03
14	GO:0005871: kinesin complex	1.77E-03
15	GO:0016021: integral component of membrane	2.57E-03
16	GO:0009543: chloroplast thylakoid lumen	3.28E-03
17	GO:0005623: cell	3.39E-03
18	GO:0009579: thylakoid	3.72E-03
19	GO:0042644: chloroplast nucleoid	5.54E-03
20	GO:0016604: nuclear body	6.21E-03
21	GO:0031977: thylakoid lumen	7.18E-03
22	GO:0032040: small-subunit processome	8.41E-03
23	GO:0005874: microtubule	1.08E-02
24	GO:0030176: integral component of endoplasmic reticulum membrane	1.09E-02
25	GO:0030076: light-harvesting complex	1.09E-02
26	GO:0009654: photosystem II oxygen evolving complex	1.35E-02
27	GO:0042651: thylakoid membrane	1.35E-02
28	GO:0009505: plant-type cell wall	1.38E-02
29	GO:0009706: chloroplast inner membrane	1.50E-02
30	GO:0009524: phragmoplast	1.99E-02
31	GO:0031225: anchored component of membrane	2.04E-02
32	GO:0005886: plasma membrane	2.10E-02
33	GO:0009504: cell plate	2.27E-02
34	GO:0019898: extrinsic component of membrane	2.27E-02
35	GO:0005694: chromosome	2.50E-02
36	GO:0009705: plant-type vacuole membrane	2.60E-02
37	GO:0010319: stromule	2.85E-02
38	GO:0030529: intracellular ribonucleoprotein complex	3.10E-02
39	GO:0019005: SCF ubiquitin ligase complex	3.75E-02
40	GO:0009707: chloroplast outer membrane	3.75E-02
41	GO:0009536: plastid	4.03E-02
42	GO:0005819: spindle	4.71E-02
43	GO:0009534: chloroplast thylakoid	4.78E-02
44	GO:0031969: chloroplast membrane	4.96E-02