Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G05320

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070979: protein K11-linked ubiquitination0.00E+00
2GO:2000469: negative regulation of peroxidase activity0.00E+00
3GO:0010081: regulation of inflorescence meristem growth0.00E+00
4GO:0090706: specification of plant organ position0.00E+00
5GO:0071000: response to magnetism0.00E+00
6GO:0009583: detection of light stimulus0.00E+00
7GO:0007037: vacuolar phosphate transport0.00E+00
8GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
9GO:0006573: valine metabolic process0.00E+00
10GO:1905177: tracheary element differentiation0.00E+00
11GO:1900871: chloroplast mRNA modification5.59E-06
12GO:0010158: abaxial cell fate specification1.21E-04
13GO:0080110: sporopollenin biosynthetic process1.21E-04
14GO:0005992: trehalose biosynthetic process1.54E-04
15GO:0010431: seed maturation2.04E-04
16GO:0051510: regulation of unidimensional cell growth3.06E-04
17GO:0006551: leucine metabolic process3.52E-04
18GO:0072387: flavin adenine dinucleotide metabolic process3.52E-04
19GO:0043087: regulation of GTPase activity3.52E-04
20GO:2000021: regulation of ion homeostasis3.52E-04
21GO:0070574: cadmium ion transmembrane transport3.52E-04
22GO:0051247: positive regulation of protein metabolic process3.52E-04
23GO:0090548: response to nitrate starvation3.52E-04
24GO:0000066: mitochondrial ornithine transport3.52E-04
25GO:2000905: negative regulation of starch metabolic process3.52E-04
26GO:0010450: inflorescence meristem growth3.52E-04
27GO:0034757: negative regulation of iron ion transport3.52E-04
28GO:0000305: response to oxygen radical3.52E-04
29GO:0006419: alanyl-tRNA aminoacylation3.52E-04
30GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.52E-04
31GO:0009090: homoserine biosynthetic process3.52E-04
32GO:0046900: tetrahydrofolylpolyglutamate metabolic process3.52E-04
33GO:0000012: single strand break repair3.52E-04
34GO:0043266: regulation of potassium ion transport3.52E-04
35GO:1902025: nitrate import3.52E-04
36GO:0010080: regulation of floral meristem growth3.52E-04
37GO:0009086: methionine biosynthetic process6.66E-04
38GO:0010024: phytochromobilin biosynthetic process7.67E-04
39GO:0010343: singlet oxygen-mediated programmed cell death7.67E-04
40GO:1901529: positive regulation of anion channel activity7.67E-04
41GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole7.67E-04
42GO:0060359: response to ammonium ion7.67E-04
43GO:0048255: mRNA stabilization7.67E-04
44GO:0010617: circadian regulation of calcium ion oscillation7.67E-04
45GO:0010271: regulation of chlorophyll catabolic process7.67E-04
46GO:0099402: plant organ development7.67E-04
47GO:0010029: regulation of seed germination9.02E-04
48GO:0010582: floral meristem determinacy1.02E-03
49GO:0006094: gluconeogenesis1.16E-03
50GO:0090153: regulation of sphingolipid biosynthetic process1.24E-03
51GO:0043157: response to cation stress1.24E-03
52GO:0071398: cellular response to fatty acid1.24E-03
53GO:0005977: glycogen metabolic process1.24E-03
54GO:0045165: cell fate commitment1.24E-03
55GO:0080117: secondary growth1.24E-03
56GO:1902448: positive regulation of shade avoidance1.24E-03
57GO:0048586: regulation of long-day photoperiodism, flowering1.24E-03
58GO:0031145: anaphase-promoting complex-dependent catabolic process1.24E-03
59GO:0006788: heme oxidation1.24E-03
60GO:0010022: meristem determinacy1.24E-03
61GO:0010623: programmed cell death involved in cell development1.24E-03
62GO:1901672: positive regulation of systemic acquired resistance1.24E-03
63GO:0090308: regulation of methylation-dependent chromatin silencing1.79E-03
64GO:0046836: glycolipid transport1.79E-03
65GO:0009067: aspartate family amino acid biosynthetic process1.79E-03
66GO:0010371: regulation of gibberellin biosynthetic process1.79E-03
67GO:0051513: regulation of monopolar cell growth1.79E-03
68GO:0030071: regulation of mitotic metaphase/anaphase transition1.79E-03
69GO:0051639: actin filament network formation1.79E-03
70GO:0034059: response to anoxia1.79E-03
71GO:0009800: cinnamic acid biosynthetic process1.79E-03
72GO:0010306: rhamnogalacturonan II biosynthetic process1.79E-03
73GO:0009226: nucleotide-sugar biosynthetic process1.79E-03
74GO:0019048: modulation by virus of host morphology or physiology1.79E-03
75GO:1901332: negative regulation of lateral root development1.79E-03
76GO:0042989: sequestering of actin monomers1.79E-03
77GO:0031048: chromatin silencing by small RNA1.79E-03
78GO:1990019: protein storage vacuole organization1.79E-03
79GO:0009451: RNA modification2.17E-03
80GO:0009793: embryo development ending in seed dormancy2.35E-03
81GO:0010021: amylopectin biosynthetic process2.40E-03
82GO:0051764: actin crosslink formation2.40E-03
83GO:0048442: sepal development2.40E-03
84GO:2000306: positive regulation of photomorphogenesis2.40E-03
85GO:0051567: histone H3-K9 methylation2.40E-03
86GO:0010508: positive regulation of autophagy2.40E-03
87GO:0008295: spermidine biosynthetic process2.40E-03
88GO:1902347: response to strigolactone2.40E-03
89GO:0006749: glutathione metabolic process2.40E-03
90GO:0009636: response to toxic substance2.53E-03
91GO:0010584: pollen exine formation2.82E-03
92GO:0045038: protein import into chloroplast thylakoid membrane3.07E-03
93GO:1902183: regulation of shoot apical meristem development3.07E-03
94GO:0016123: xanthophyll biosynthetic process3.07E-03
95GO:0032876: negative regulation of DNA endoreduplication3.07E-03
96GO:0016131: brassinosteroid metabolic process3.07E-03
97GO:0030041: actin filament polymerization3.07E-03
98GO:0010117: photoprotection3.07E-03
99GO:0046283: anthocyanin-containing compound metabolic process3.07E-03
100GO:0010087: phloem or xylem histogenesis3.31E-03
101GO:0048868: pollen tube development3.57E-03
102GO:0010268: brassinosteroid homeostasis3.57E-03
103GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.79E-03
104GO:0009959: negative gravitropism3.79E-03
105GO:0006555: methionine metabolic process3.79E-03
106GO:0060918: auxin transport3.79E-03
107GO:0048831: regulation of shoot system development3.79E-03
108GO:0010190: cytochrome b6f complex assembly3.79E-03
109GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.79E-03
110GO:1901371: regulation of leaf morphogenesis3.79E-03
111GO:0006559: L-phenylalanine catabolic process3.79E-03
112GO:0016458: gene silencing3.79E-03
113GO:0007059: chromosome segregation3.83E-03
114GO:0009646: response to absence of light3.83E-03
115GO:0009099: valine biosynthetic process4.57E-03
116GO:0009088: threonine biosynthetic process4.57E-03
117GO:0010310: regulation of hydrogen peroxide metabolic process4.57E-03
118GO:0042372: phylloquinone biosynthetic process4.57E-03
119GO:0010076: maintenance of floral meristem identity4.57E-03
120GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.57E-03
121GO:0009082: branched-chain amino acid biosynthetic process4.57E-03
122GO:0048509: regulation of meristem development4.57E-03
123GO:0010583: response to cyclopentenone4.70E-03
124GO:0030307: positive regulation of cell growth5.40E-03
125GO:0006955: immune response5.40E-03
126GO:0010050: vegetative phase change5.40E-03
127GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.40E-03
128GO:0006400: tRNA modification5.40E-03
129GO:0070413: trehalose metabolism in response to stress6.27E-03
130GO:0006875: cellular metal ion homeostasis6.27E-03
131GO:0048564: photosystem I assembly6.27E-03
132GO:0009850: auxin metabolic process6.27E-03
133GO:0042255: ribosome assembly6.27E-03
134GO:0006353: DNA-templated transcription, termination6.27E-03
135GO:0032875: regulation of DNA endoreduplication6.27E-03
136GO:0005975: carbohydrate metabolic process6.70E-03
137GO:0010093: specification of floral organ identity7.19E-03
138GO:0009657: plastid organization7.19E-03
139GO:0009097: isoleucine biosynthetic process7.19E-03
140GO:0009416: response to light stimulus7.24E-03
141GO:0000373: Group II intron splicing8.16E-03
142GO:0009051: pentose-phosphate shunt, oxidative branch8.16E-03
143GO:0090305: nucleic acid phosphodiester bond hydrolysis8.16E-03
144GO:0006098: pentose-phosphate shunt8.16E-03
145GO:2000024: regulation of leaf development8.16E-03
146GO:1900426: positive regulation of defense response to bacterium9.17E-03
147GO:0009638: phototropism9.17E-03
148GO:0035999: tetrahydrofolate interconversion9.17E-03
149GO:0010018: far-red light signaling pathway9.17E-03
150GO:1900865: chloroplast RNA modification9.17E-03
151GO:0048527: lateral root development9.64E-03
152GO:0030422: production of siRNA involved in RNA interference1.02E-02
153GO:0006259: DNA metabolic process1.02E-02
154GO:0009299: mRNA transcription1.02E-02
155GO:0048441: petal development1.02E-02
156GO:0010216: maintenance of DNA methylation1.13E-02
157GO:0006265: DNA topological change1.13E-02
158GO:0009089: lysine biosynthetic process via diaminopimelate1.13E-02
159GO:0006415: translational termination1.13E-02
160GO:0006839: mitochondrial transport1.21E-02
161GO:0055114: oxidation-reduction process1.30E-02
162GO:0006006: glucose metabolic process1.37E-02
163GO:0010075: regulation of meristem growth1.37E-02
164GO:0009725: response to hormone1.37E-02
165GO:0009785: blue light signaling pathway1.37E-02
166GO:0042546: cell wall biogenesis1.42E-02
167GO:0009644: response to high light intensity1.48E-02
168GO:0006302: double-strand break repair1.49E-02
169GO:0010207: photosystem II assembly1.49E-02
170GO:0048440: carpel development1.49E-02
171GO:0006541: glutamine metabolic process1.49E-02
172GO:0009933: meristem structural organization1.49E-02
173GO:0090351: seedling development1.61E-02
174GO:0019762: glucosinolate catabolic process1.74E-02
175GO:0042753: positive regulation of circadian rhythm1.74E-02
176GO:0009658: chloroplast organization1.75E-02
177GO:2000377: regulation of reactive oxygen species metabolic process1.88E-02
178GO:0009944: polarity specification of adaxial/abaxial axis1.88E-02
179GO:0030150: protein import into mitochondrial matrix1.88E-02
180GO:0007010: cytoskeleton organization1.88E-02
181GO:0051017: actin filament bundle assembly1.88E-02
182GO:0046686: response to cadmium ion1.95E-02
183GO:0009909: regulation of flower development2.05E-02
184GO:0016998: cell wall macromolecule catabolic process2.15E-02
185GO:0031408: oxylipin biosynthetic process2.15E-02
186GO:0006306: DNA methylation2.15E-02
187GO:0006096: glycolytic process2.18E-02
188GO:0048316: seed development2.26E-02
189GO:0006730: one-carbon metabolic process2.29E-02
190GO:0030245: cellulose catabolic process2.29E-02
191GO:0071555: cell wall organization2.44E-02
192GO:0009693: ethylene biosynthetic process2.44E-02
193GO:0071215: cellular response to abscisic acid stimulus2.44E-02
194GO:0009740: gibberellic acid mediated signaling pathway2.48E-02
195GO:0010089: xylem development2.59E-02
196GO:0048443: stamen development2.59E-02
197GO:0019722: calcium-mediated signaling2.59E-02
198GO:0070417: cellular response to cold2.74E-02
199GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.74E-02
200GO:0008033: tRNA processing2.90E-02
201GO:0010118: stomatal movement2.90E-02
202GO:0010182: sugar mediated signaling pathway3.06E-02
203GO:0006342: chromatin silencing3.06E-02
204GO:0009741: response to brassinosteroid3.06E-02
205GO:0006520: cellular amino acid metabolic process3.06E-02
206GO:0045489: pectin biosynthetic process3.06E-02
207GO:0010154: fruit development3.06E-02
208GO:0042752: regulation of circadian rhythm3.22E-02
209GO:0048544: recognition of pollen3.22E-02
210GO:0019252: starch biosynthetic process3.39E-02
211GO:0055072: iron ion homeostasis3.39E-02
212GO:0016132: brassinosteroid biosynthetic process3.55E-02
213GO:0000302: response to reactive oxygen species3.55E-02
214GO:0009845: seed germination3.56E-02
215GO:0032502: developmental process3.72E-02
216GO:0009630: gravitropism3.72E-02
217GO:0007264: small GTPase mediated signal transduction3.72E-02
218GO:0016032: viral process3.72E-02
219GO:0016125: sterol metabolic process4.07E-02
220GO:0009639: response to red or far red light4.07E-02
221GO:0006464: cellular protein modification process4.07E-02
222GO:0010252: auxin homeostasis4.07E-02
223GO:0007267: cell-cell signaling4.25E-02
224GO:0040008: regulation of growth4.33E-02
225GO:0051607: defense response to virus4.43E-02
226GO:0010150: leaf senescence4.53E-02
227GO:0016126: sterol biosynthetic process4.62E-02
228GO:0001666: response to hypoxia4.62E-02
229GO:0010027: thylakoid membrane organization4.62E-02
230GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.80E-02
231GO:0009816: defense response to bacterium, incompatible interaction4.80E-02
RankGO TermAdjusted P value
1GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
2GO:0050613: delta14-sterol reductase activity0.00E+00
3GO:0004805: trehalose-phosphatase activity4.04E-05
4GO:0016597: amino acid binding8.04E-05
5GO:0004462: lactoylglutathione lyase activity1.74E-04
6GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.52E-04
7GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity3.52E-04
8GO:0042834: peptidoglycan binding3.52E-04
9GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.52E-04
10GO:0004813: alanine-tRNA ligase activity3.52E-04
11GO:0005290: L-histidine transmembrane transporter activity3.52E-04
12GO:0003984: acetolactate synthase activity3.52E-04
13GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity3.52E-04
14GO:0008158: hedgehog receptor activity3.52E-04
15GO:0008395: steroid hydroxylase activity3.52E-04
16GO:0008242: omega peptidase activity3.52E-04
17GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity3.52E-04
18GO:0017118: lipoyltransferase activity7.67E-04
19GO:0004362: glutathione-disulfide reductase activity7.67E-04
20GO:0043425: bHLH transcription factor binding7.67E-04
21GO:0004766: spermidine synthase activity7.67E-04
22GO:0019156: isoamylase activity7.67E-04
23GO:0000064: L-ornithine transmembrane transporter activity7.67E-04
24GO:0004412: homoserine dehydrogenase activity7.67E-04
25GO:0034722: gamma-glutamyl-peptidase activity7.67E-04
26GO:0016743: carboxyl- or carbamoyltransferase activity7.67E-04
27GO:0003988: acetyl-CoA C-acyltransferase activity7.67E-04
28GO:0050736: O-malonyltransferase activity7.67E-04
29GO:0009884: cytokinin receptor activity7.67E-04
30GO:0048531: beta-1,3-galactosyltransferase activity7.67E-04
31GO:0005034: osmosensor activity1.24E-03
32GO:0045548: phenylalanine ammonia-lyase activity1.24E-03
33GO:0004148: dihydrolipoyl dehydrogenase activity1.24E-03
34GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.30E-03
35GO:0004222: metalloendopeptidase activity1.32E-03
36GO:0009882: blue light photoreceptor activity1.79E-03
37GO:0015189: L-lysine transmembrane transporter activity1.79E-03
38GO:0017089: glycolipid transporter activity1.79E-03
39GO:0004072: aspartate kinase activity1.79E-03
40GO:0015086: cadmium ion transmembrane transporter activity1.79E-03
41GO:0016149: translation release factor activity, codon specific1.79E-03
42GO:0015181: arginine transmembrane transporter activity1.79E-03
43GO:0035197: siRNA binding1.79E-03
44GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.79E-03
45GO:0050661: NADP binding1.86E-03
46GO:0004345: glucose-6-phosphate dehydrogenase activity2.40E-03
47GO:0051861: glycolipid binding2.40E-03
48GO:0052793: pectin acetylesterase activity2.40E-03
49GO:0042277: peptide binding2.40E-03
50GO:0004392: heme oxygenase (decyclizing) activity2.40E-03
51GO:0003785: actin monomer binding3.07E-03
52GO:0003690: double-stranded DNA binding3.33E-03
53GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.59E-03
54GO:0008200: ion channel inhibitor activity3.79E-03
55GO:0004332: fructose-bisphosphate aldolase activity3.79E-03
56GO:0004709: MAP kinase kinase kinase activity3.79E-03
57GO:0004556: alpha-amylase activity3.79E-03
58GO:0004130: cytochrome-c peroxidase activity3.79E-03
59GO:0016688: L-ascorbate peroxidase activity3.79E-03
60GO:0050662: coenzyme binding3.83E-03
61GO:0019900: kinase binding4.57E-03
62GO:0004518: nuclease activity4.70E-03
63GO:0015103: inorganic anion transmembrane transporter activity5.40E-03
64GO:0043022: ribosome binding6.27E-03
65GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.19E-03
66GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity8.16E-03
67GO:0003747: translation release factor activity8.16E-03
68GO:0071949: FAD binding8.16E-03
69GO:0005096: GTPase activator activity8.75E-03
70GO:0030955: potassium ion binding9.17E-03
71GO:0004743: pyruvate kinase activity9.17E-03
72GO:0030234: enzyme regulator activity1.02E-02
73GO:0004673: protein histidine kinase activity1.02E-02
74GO:0005089: Rho guanyl-nucleotide exchange factor activity1.13E-02
75GO:0004519: endonuclease activity1.16E-02
76GO:0004521: endoribonuclease activity1.25E-02
77GO:0000976: transcription regulatory region sequence-specific DNA binding1.25E-02
78GO:0000049: tRNA binding1.25E-02
79GO:0042802: identical protein binding1.36E-02
80GO:0000155: phosphorelay sensor kinase activity1.37E-02
81GO:0008081: phosphoric diester hydrolase activity1.37E-02
82GO:0015266: protein channel activity1.37E-02
83GO:0031418: L-ascorbic acid binding1.88E-02
84GO:0043424: protein histidine kinase binding2.01E-02
85GO:0004176: ATP-dependent peptidase activity2.15E-02
86GO:0008810: cellulase activity2.44E-02
87GO:0003727: single-stranded RNA binding2.59E-02
88GO:0008514: organic anion transmembrane transporter activity2.59E-02
89GO:0004871: signal transducer activity3.05E-02
90GO:0004527: exonuclease activity3.06E-02
91GO:0046873: metal ion transmembrane transporter activity3.06E-02
92GO:0010181: FMN binding3.22E-02
93GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.38E-02
94GO:0019901: protein kinase binding3.39E-02
95GO:0016762: xyloglucan:xyloglucosyl transferase activity3.55E-02
96GO:0016491: oxidoreductase activity3.85E-02
97GO:0051015: actin filament binding3.90E-02
98GO:0016791: phosphatase activity4.07E-02
99GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.23E-02
100GO:0008237: metallopeptidase activity4.25E-02
101GO:0004672: protein kinase activity4.59E-02
102GO:0003723: RNA binding4.62E-02
RankGO TermAdjusted P value
1GO:0005948: acetolactate synthase complex0.00E+00
2GO:0010368: chloroplast isoamylase complex0.00E+00
3GO:0009507: chloroplast1.54E-07
4GO:0016604: nuclear body6.66E-04
5GO:0080085: signal recognition particle, chloroplast targeting7.67E-04
6GO:0016605: PML body1.24E-03
7GO:0032432: actin filament bundle1.79E-03
8GO:0005719: nuclear euchromatin1.79E-03
9GO:0042651: thylakoid membrane1.98E-03
10GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.40E-03
11GO:0046658: anchored component of plasma membrane3.21E-03
12GO:0031225: anchored component of membrane4.99E-03
13GO:0031305: integral component of mitochondrial inner membrane6.27E-03
14GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.19E-03
15GO:0005720: nuclear heterochromatin8.16E-03
16GO:0005680: anaphase-promoting complex8.16E-03
17GO:0015030: Cajal body9.17E-03
18GO:0005884: actin filament1.13E-02
19GO:0009505: plant-type cell wall1.29E-02
20GO:0005578: proteinaceous extracellular matrix1.37E-02
21GO:0009574: preprophase band1.37E-02
22GO:0005938: cell cortex1.37E-02
23GO:0009570: chloroplast stroma1.44E-02
24GO:0030095: chloroplast photosystem II1.49E-02
25GO:0009535: chloroplast thylakoid membrane1.53E-02
26GO:0030176: integral component of endoplasmic reticulum membrane1.61E-02
27GO:0009654: photosystem II oxygen evolving complex2.01E-02
28GO:0015629: actin cytoskeleton2.44E-02
29GO:0012505: endomembrane system2.55E-02
30GO:0005744: mitochondrial inner membrane presequence translocase complex2.59E-02
31GO:0019898: extrinsic component of membrane3.39E-02
32GO:0005773: vacuole4.10E-02
33GO:0043231: intracellular membrane-bounded organelle4.21E-02
34GO:0009295: nucleoid4.25E-02
35GO:0009705: plant-type vacuole membrane4.53E-02
36GO:0030529: intracellular ribonucleoprotein complex4.62E-02
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Gene type



Gene DE type