co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0010398: xylogalacturonan metabolic process	0.00E+00
3	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
4	GO:0072722: response to amitrole	0.00E+00
5	GO:0071985: multivesicular body sorting pathway	0.00E+00
6	GO:0006903: vesicle targeting	0.00E+00
7	GO:0006216: cytidine catabolic process	0.00E+00
8	GO:0002084: protein depalmitoylation	0.00E+00
9	GO:0046680: response to DDT	0.00E+00
10	GO:0046686: response to cadmium ion	4.20E-05
11	GO:0060321: acceptance of pollen	1.72E-04
12	GO:0042964: thioredoxin reduction	1.77E-04
13	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.77E-04
14	GO:0000032: cell wall mannoprotein biosynthetic process	1.77E-04
15	GO:0015709: thiosulfate transport	4.01E-04
16	GO:0071422: succinate transmembrane transport	4.01E-04
17	GO:0009805: coumarin biosynthetic process	4.01E-04
18	GO:0010102: lateral root morphogenesis	4.47E-04
19	GO:0006807: nitrogen compound metabolic process	4.47E-04
20	GO:0015031: protein transport	5.06E-04
21	GO:0090351: seedling development	5.64E-04
22	GO:0010053: root epidermal cell differentiation	5.64E-04
23	GO:0061158: 3'-UTR-mediated mRNA destabilization	6.55E-04
24	GO:0006517: protein deglycosylation	6.55E-04
25	GO:0001927: exocyst assembly	6.55E-04
26	GO:0010272: response to silver ion	6.55E-04
27	GO:0033591: response to L-ascorbic acid	6.55E-04
28	GO:0006556: S-adenosylmethionine biosynthetic process	6.55E-04
29	GO:0006874: cellular calcium ion homeostasis	7.64E-04
30	GO:0051601: exocyst localization	9.34E-04
31	GO:0009298: GDP-mannose biosynthetic process	9.34E-04
32	GO:0015729: oxaloacetate transport	9.34E-04
33	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	9.34E-04
34	GO:0006612: protein targeting to membrane	9.34E-04
35	GO:0006893: Golgi to plasma membrane transport	9.34E-04
36	GO:0006096: glycolytic process	1.13E-03
37	GO:0010188: response to microbial phytotoxin	1.24E-03
38	GO:0010387: COP9 signalosome assembly	1.24E-03
39	GO:0010363: regulation of plant-type hypersensitive response	1.24E-03
40	GO:0016192: vesicle-mediated transport	1.34E-03
41	GO:0032957: inositol trisphosphate metabolic process	1.57E-03
42	GO:0071423: malate transmembrane transport	1.57E-03
43	GO:0009823: cytokinin catabolic process	1.57E-03
44	GO:0006886: intracellular protein transport	1.71E-03
45	GO:0009972: cytidine deamination	1.94E-03
46	GO:0006555: methionine metabolic process	1.94E-03
47	GO:0009228: thiamine biosynthetic process	1.94E-03
48	GO:0035435: phosphate ion transmembrane transport	1.94E-03
49	GO:0046855: inositol phosphate dephosphorylation	1.94E-03
50	GO:0009082: branched-chain amino acid biosynthetic process	2.32E-03
51	GO:0009099: valine biosynthetic process	2.32E-03
52	GO:0009554: megasporogenesis	2.32E-03
53	GO:0019509: L-methionine salvage from methylthioadenosine	2.32E-03
54	GO:0000338: protein deneddylation	2.74E-03
55	GO:0071669: plant-type cell wall organization or biogenesis	2.74E-03
56	GO:0008272: sulfate transport	2.74E-03
57	GO:0050829: defense response to Gram-negative bacterium	2.74E-03
58	GO:0006102: isocitrate metabolic process	3.17E-03
59	GO:0009819: drought recovery	3.17E-03
60	GO:0006491: N-glycan processing	3.17E-03
61	GO:0009407: toxin catabolic process	3.41E-03
62	GO:0010043: response to zinc ion	3.57E-03
63	GO:0009097: isoleucine biosynthetic process	3.63E-03
64	GO:0010100: negative regulation of photomorphogenesis	3.63E-03
65	GO:0010093: specification of floral organ identity	3.63E-03
66	GO:0006972: hyperosmotic response	3.63E-03
67	GO:0009699: phenylpropanoid biosynthetic process	3.63E-03
68	GO:0006002: fructose 6-phosphate metabolic process	3.63E-03
69	GO:0007186: G-protein coupled receptor signaling pathway	3.63E-03
70	GO:0010497: plasmodesmata-mediated intercellular transport	3.63E-03
71	GO:0019430: removal of superoxide radicals	3.63E-03
72	GO:0006099: tricarboxylic acid cycle	4.09E-03
73	GO:0046685: response to arsenic-containing substance	4.10E-03
74	GO:0009098: leucine biosynthetic process	4.60E-03
75	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.60E-03
76	GO:2000280: regulation of root development	4.60E-03
77	GO:0006887: exocytosis	4.64E-03
78	GO:0006032: chitin catabolic process	5.11E-03
79	GO:0009688: abscisic acid biosynthetic process	5.11E-03
80	GO:0000272: polysaccharide catabolic process	5.65E-03
81	GO:0046856: phosphatidylinositol dephosphorylation	5.65E-03
82	GO:0016925: protein sumoylation	6.20E-03
83	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.20E-03
84	GO:0006790: sulfur compound metabolic process	6.20E-03
85	GO:0009846: pollen germination	6.32E-03
86	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	6.78E-03
87	GO:0006417: regulation of translation	7.51E-03
88	GO:0046854: phosphatidylinositol phosphorylation	7.98E-03
89	GO:0007033: vacuole organization	7.98E-03
90	GO:0019853: L-ascorbic acid biosynthetic process	7.98E-03
91	GO:0045454: cell redox homeostasis	8.16E-03
92	GO:0000162: tryptophan biosynthetic process	8.61E-03
93	GO:0016998: cell wall macromolecule catabolic process	1.06E-02
94	GO:0030433: ubiquitin-dependent ERAD pathway	1.13E-02
95	GO:0019748: secondary metabolic process	1.13E-02
96	GO:0009814: defense response, incompatible interaction	1.13E-02
97	GO:0006730: one-carbon metabolic process	1.13E-02
98	GO:0010227: floral organ abscission	1.20E-02
99	GO:0009693: ethylene biosynthetic process	1.20E-02
100	GO:0009058: biosynthetic process	1.28E-02
101	GO:0006662: glycerol ether metabolic process	1.50E-02
102	GO:0045489: pectin biosynthetic process	1.50E-02
103	GO:0048544: recognition of pollen	1.58E-02
104	GO:0009646: response to absence of light	1.58E-02
105	GO:0009851: auxin biosynthetic process	1.66E-02
106	GO:0010150: leaf senescence	1.68E-02
107	GO:0045490: pectin catabolic process	1.68E-02
108	GO:0030163: protein catabolic process	1.91E-02
109	GO:0071281: cellular response to iron ion	1.91E-02
110	GO:0006464: cellular protein modification process	2.00E-02
111	GO:0006914: autophagy	2.00E-02
112	GO:0006904: vesicle docking involved in exocytosis	2.09E-02
113	GO:0051607: defense response to virus	2.18E-02
114	GO:0009416: response to light stimulus	2.20E-02
115	GO:0009615: response to virus	2.27E-02
116	GO:0009627: systemic acquired resistance	2.45E-02
117	GO:0006974: cellular response to DNA damage stimulus	2.45E-02
118	GO:0006888: ER to Golgi vesicle-mediated transport	2.55E-02
119	GO:0016049: cell growth	2.64E-02
120	GO:0009817: defense response to fungus, incompatible interaction	2.74E-02
121	GO:0009860: pollen tube growth	2.80E-02
122	GO:0050832: defense response to fungus	2.82E-02
123	GO:0006499: N-terminal protein myristoylation	2.94E-02
124	GO:0007568: aging	3.04E-02
125	GO:0045087: innate immune response	3.24E-02
126	GO:0034599: cellular response to oxidative stress	3.35E-02
127	GO:0006839: mitochondrial transport	3.56E-02
128	GO:0006631: fatty acid metabolic process	3.67E-02
129	GO:0009744: response to sucrose	3.88E-02
130	GO:0051707: response to other organism	3.88E-02
131	GO:0009640: photomorphogenesis	3.88E-02
132	GO:0000209: protein polyubiquitination	4.00E-02
133	GO:0009636: response to toxic substance	4.22E-02
134	GO:0031347: regulation of defense response	4.45E-02
135	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.45E-02
136	GO:0009664: plant-type cell wall organization	4.56E-02
137	GO:0006629: lipid metabolic process	4.73E-02
138	GO:0006486: protein glycosylation	4.80E-02
139	GO:0009585: red, far-red light phototransduction	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0047844: deoxycytidine deaminase activity	0.00E+00
5	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	5.77E-05
6	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	5.77E-05
7	GO:0008320: protein transmembrane transporter activity	1.07E-04
8	GO:0019786: Atg8-specific protease activity	1.77E-04
9	GO:0048037: cofactor binding	1.77E-04
10	GO:0004476: mannose-6-phosphate isomerase activity	1.77E-04
11	GO:2001147: camalexin binding	1.77E-04
12	GO:0004649: poly(ADP-ribose) glycohydrolase activity	1.77E-04
13	GO:2001227: quercitrin binding	1.77E-04
14	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.77E-04
15	GO:0046030: inositol trisphosphate phosphatase activity	1.77E-04
16	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.77E-04
17	GO:0032266: phosphatidylinositol-3-phosphate binding	1.77E-04
18	GO:0030955: potassium ion binding	2.51E-04
19	GO:0004743: pyruvate kinase activity	2.51E-04
20	GO:0019172: glyoxalase III activity	4.01E-04
21	GO:1901677: phosphate transmembrane transporter activity	4.01E-04
22	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.01E-04
23	GO:0052739: phosphatidylserine 1-acylhydrolase activity	4.01E-04
24	GO:0010297: heteropolysaccharide binding	4.01E-04
25	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	4.01E-04
26	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.01E-04
27	GO:0019779: Atg8 activating enzyme activity	4.01E-04
28	GO:0015117: thiosulfate transmembrane transporter activity	4.01E-04
29	GO:0005217: intracellular ligand-gated ion channel activity	5.64E-04
30	GO:0004970: ionotropic glutamate receptor activity	5.64E-04
31	GO:0004478: methionine adenosyltransferase activity	6.55E-04
32	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.55E-04
33	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.55E-04
34	GO:0015141: succinate transmembrane transporter activity	6.55E-04
35	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	6.55E-04
36	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.55E-04
37	GO:0052656: L-isoleucine transaminase activity	9.34E-04
38	GO:0052654: L-leucine transaminase activity	9.34E-04
39	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	9.34E-04
40	GO:0017077: oxidative phosphorylation uncoupler activity	9.34E-04
41	GO:0052655: L-valine transaminase activity	9.34E-04
42	GO:0004445: inositol-polyphosphate 5-phosphatase activity	9.34E-04
43	GO:0015131: oxaloacetate transmembrane transporter activity	9.34E-04
44	GO:0004449: isocitrate dehydrogenase (NAD+) activity	9.34E-04
45	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.24E-03
46	GO:0004031: aldehyde oxidase activity	1.24E-03
47	GO:0050302: indole-3-acetaldehyde oxidase activity	1.24E-03
48	GO:0019776: Atg8 ligase activity	1.24E-03
49	GO:0004084: branched-chain-amino-acid transaminase activity	1.24E-03
50	GO:0070628: proteasome binding	1.24E-03
51	GO:0004930: G-protein coupled receptor activity	1.24E-03
52	GO:0004791: thioredoxin-disulfide reductase activity	1.44E-03
53	GO:0031386: protein tag	1.57E-03
54	GO:0008374: O-acyltransferase activity	1.57E-03
55	GO:0019139: cytokinin dehydrogenase activity	1.57E-03
56	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.94E-03
57	GO:0035252: UDP-xylosyltransferase activity	1.94E-03
58	GO:0008474: palmitoyl-(protein) hydrolase activity	1.94E-03
59	GO:0004602: glutathione peroxidase activity	2.32E-03
60	GO:0051920: peroxiredoxin activity	2.32E-03
61	GO:0004126: cytidine deaminase activity	2.32E-03
62	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.32E-03
63	GO:0043295: glutathione binding	2.74E-03
64	GO:0003872: 6-phosphofructokinase activity	2.74E-03
65	GO:0015140: malate transmembrane transporter activity	2.74E-03
66	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.17E-03
67	GO:0016209: antioxidant activity	3.17E-03
68	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.57E-03
69	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.63E-03
70	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.27E-03
71	GO:0000287: magnesium ion binding	4.82E-03
72	GO:0004364: glutathione transferase activity	4.84E-03
73	GO:0004568: chitinase activity	5.11E-03
74	GO:0050660: flavin adenine dinucleotide binding	5.94E-03
75	GO:0015116: sulfate transmembrane transporter activity	6.20E-03
76	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.20E-03
77	GO:0031072: heat shock protein binding	6.78E-03
78	GO:0008131: primary amine oxidase activity	7.37E-03
79	GO:0031624: ubiquitin conjugating enzyme binding	7.37E-03
80	GO:0031625: ubiquitin protein ligase binding	7.51E-03
81	GO:0008061: chitin binding	7.98E-03
82	GO:0043130: ubiquitin binding	9.26E-03
83	GO:0015035: protein disulfide oxidoreductase activity	9.95E-03
84	GO:0004298: threonine-type endopeptidase activity	1.06E-02
85	GO:0016301: kinase activity	1.18E-02
86	GO:0003727: single-stranded RNA binding	1.27E-02
87	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.27E-02
88	GO:0030170: pyridoxal phosphate binding	1.35E-02
89	GO:0047134: protein-disulfide reductase activity	1.35E-02
90	GO:0005199: structural constituent of cell wall	1.50E-02
91	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.91E-02
92	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.09E-02
93	GO:0008237: metallopeptidase activity	2.09E-02
94	GO:0051213: dioxygenase activity	2.27E-02
95	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.55E-02
96	GO:0004601: peroxidase activity	2.60E-02
97	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.74E-02
98	GO:0043531: ADP binding	2.85E-02
99	GO:0030145: manganese ion binding	3.04E-02
100	GO:0030246: carbohydrate binding	3.19E-02
101	GO:0004497: monooxygenase activity	3.22E-02
102	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.24E-02
103	GO:0003746: translation elongation factor activity	3.24E-02
104	GO:0003993: acid phosphatase activity	3.35E-02
105	GO:0061630: ubiquitin protein ligase activity	3.38E-02
106	GO:0005507: copper ion binding	3.42E-02
107	GO:0050661: NADP binding	3.56E-02
108	GO:0042393: histone binding	3.56E-02
109	GO:0051537: 2 iron, 2 sulfur cluster binding	4.11E-02
110	GO:0005198: structural molecule activity	4.22E-02
111	GO:0051287: NAD binding	4.45E-02
112	GO:0016298: lipase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.07E-05
2	GO:0005829: cytosol	5.21E-05
3	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.07E-04
4	GO:0000814: ESCRT II complex	4.01E-04
5	GO:0009530: primary cell wall	6.55E-04
6	GO:0030130: clathrin coat of trans-Golgi network vesicle	6.55E-04
7	GO:0030132: clathrin coat of coated pit	6.55E-04
8	GO:0005839: proteasome core complex	8.37E-04
9	GO:0005775: vacuolar lumen	9.34E-04
10	GO:0009506: plasmodesma	1.03E-03
11	GO:0005783: endoplasmic reticulum	1.09E-03
12	GO:0005776: autophagosome	1.24E-03
13	GO:0005773: vacuole	1.47E-03
14	GO:0005945: 6-phosphofructokinase complex	1.57E-03
15	GO:0000145: exocyst	1.76E-03
16	GO:0032580: Golgi cisterna membrane	2.00E-03
17	GO:0005618: cell wall	2.07E-03
18	GO:0005737: cytoplasm	2.45E-03
19	GO:0005789: endoplasmic reticulum membrane	2.66E-03
20	GO:0000421: autophagosome membrane	3.17E-03
21	GO:0031982: vesicle	3.17E-03
22	GO:0019773: proteasome core complex, alpha-subunit complex	3.63E-03
23	GO:0031090: organelle membrane	4.10E-03
24	GO:0008180: COP9 signalosome	4.10E-03
25	GO:0048471: perinuclear region of cytoplasm	5.65E-03
26	GO:0005856: cytoskeleton	5.66E-03
27	GO:0005794: Golgi apparatus	6.17E-03
28	GO:0000502: proteasome complex	6.78E-03
29	GO:0005769: early endosome	8.61E-03
30	GO:0031410: cytoplasmic vesicle	1.13E-02
31	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.27E-02
32	GO:0009524: phragmoplast	1.28E-02
33	GO:0005774: vacuolar membrane	1.32E-02
34	GO:0005770: late endosome	1.50E-02
35	GO:0016592: mediator complex	1.83E-02
36	GO:0071944: cell periphery	1.91E-02
37	GO:0009707: chloroplast outer membrane	2.74E-02
38	GO:0000151: ubiquitin ligase complex	2.74E-02
39	GO:0016021: integral component of membrane	4.72E-02