co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0010398: xylogalacturonan metabolic process	0.00E+00
3	GO:2000068: regulation of defense response to insect	0.00E+00
4	GO:0072722: response to amitrole	0.00E+00
5	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
6	GO:0006216: cytidine catabolic process	0.00E+00
7	GO:0052386: cell wall thickening	0.00E+00
8	GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress	0.00E+00
9	GO:0080149: sucrose induced translational repression	0.00E+00
10	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
11	GO:0046680: response to DDT	0.00E+00
12	GO:0016192: vesicle-mediated transport	4.61E-05
13	GO:1902584: positive regulation of response to water deprivation	7.06E-05
14	GO:0006886: intracellular protein transport	7.26E-05
15	GO:0045927: positive regulation of growth	1.11E-04
16	GO:0034389: lipid particle organization	2.18E-04
17	GO:0080186: developmental vegetative growth	2.83E-04
18	GO:0071669: plant-type cell wall organization or biogenesis	2.83E-04
19	GO:0006680: glucosylceramide catabolic process	3.34E-04
20	GO:0019478: D-amino acid catabolic process	3.34E-04
21	GO:1900384: regulation of flavonol biosynthetic process	3.34E-04
22	GO:0042350: GDP-L-fucose biosynthetic process	3.34E-04
23	GO:0010421: hydrogen peroxide-mediated programmed cell death	3.34E-04
24	GO:0051090: regulation of sequence-specific DNA binding transcription factor activity	3.34E-04
25	GO:0000032: cell wall mannoprotein biosynthetic process	3.34E-04
26	GO:0006605: protein targeting	3.55E-04
27	GO:0046686: response to cadmium ion	6.90E-04
28	GO:0051607: defense response to virus	7.11E-04
29	GO:0080026: response to indolebutyric acid	7.29E-04
30	GO:0051252: regulation of RNA metabolic process	7.29E-04
31	GO:0015709: thiosulfate transport	7.29E-04
32	GO:0071422: succinate transmembrane transport	7.29E-04
33	GO:0006568: tryptophan metabolic process	7.29E-04
34	GO:0009805: coumarin biosynthetic process	7.29E-04
35	GO:0042853: L-alanine catabolic process	7.29E-04
36	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	7.29E-04
37	GO:0055046: microgametogenesis	1.07E-03
38	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	1.18E-03
39	GO:0006556: S-adenosylmethionine biosynthetic process	1.18E-03
40	GO:0072661: protein targeting to plasma membrane	1.18E-03
41	GO:0006517: protein deglycosylation	1.18E-03
42	GO:0032504: multicellular organism reproduction	1.18E-03
43	GO:0010476: gibberellin mediated signaling pathway	1.18E-03
44	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.18E-03
45	GO:0010272: response to silver ion	1.18E-03
46	GO:0033591: response to L-ascorbic acid	1.18E-03
47	GO:0009062: fatty acid catabolic process	1.18E-03
48	GO:0061158: 3'-UTR-mediated mRNA destabilization	1.18E-03
49	GO:0015031: protein transport	1.26E-03
50	GO:0080024: indolebutyric acid metabolic process	1.70E-03
51	GO:0000187: activation of MAPK activity	1.70E-03
52	GO:0009298: GDP-mannose biosynthetic process	1.70E-03
53	GO:0070301: cellular response to hydrogen peroxide	1.70E-03
54	GO:0015729: oxaloacetate transport	1.70E-03
55	GO:0009226: nucleotide-sugar biosynthetic process	1.70E-03
56	GO:0009963: positive regulation of flavonoid biosynthetic process	1.70E-03
57	GO:0051707: response to other organism	1.98E-03
58	GO:0010188: response to microbial phytotoxin	2.28E-03
59	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.28E-03
60	GO:0006621: protein retention in ER lumen	2.28E-03
61	GO:1901002: positive regulation of response to salt stress	2.28E-03
62	GO:0033356: UDP-L-arabinose metabolic process	2.28E-03
63	GO:0009636: response to toxic substance	2.29E-03
64	GO:0055114: oxidation-reduction process	2.63E-03
65	GO:0006564: L-serine biosynthetic process	2.91E-03
66	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.91E-03
67	GO:0071423: malate transmembrane transport	2.91E-03
68	GO:0098719: sodium ion import across plasma membrane	2.91E-03
69	GO:0010051: xylem and phloem pattern formation	3.06E-03
70	GO:0006662: glycerol ether metabolic process	3.30E-03
71	GO:0045489: pectin biosynthetic process	3.30E-03
72	GO:0035435: phosphate ion transmembrane transport	3.60E-03
73	GO:0009972: cytidine deamination	3.60E-03
74	GO:0009759: indole glucosinolate biosynthetic process	3.60E-03
75	GO:0006555: methionine metabolic process	3.60E-03
76	GO:0060918: auxin transport	3.60E-03
77	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.60E-03
78	GO:0045040: protein import into mitochondrial outer membrane	3.60E-03
79	GO:0009099: valine biosynthetic process	4.33E-03
80	GO:0080113: regulation of seed growth	4.33E-03
81	GO:0048444: floral organ morphogenesis	4.33E-03
82	GO:0019509: L-methionine salvage from methylthioadenosine	4.33E-03
83	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.33E-03
84	GO:0030643: cellular phosphate ion homeostasis	4.33E-03
85	GO:0009082: branched-chain amino acid biosynthetic process	4.33E-03
86	GO:0017148: negative regulation of translation	4.33E-03
87	GO:0050829: defense response to Gram-negative bacterium	5.11E-03
88	GO:0006744: ubiquinone biosynthetic process	5.11E-03
89	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.11E-03
90	GO:0008272: sulfate transport	5.11E-03
91	GO:0006491: N-glycan processing	5.94E-03
92	GO:0006102: isocitrate metabolic process	5.94E-03
93	GO:0007155: cell adhesion	5.94E-03
94	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.94E-03
95	GO:0009819: drought recovery	5.94E-03
96	GO:0009627: systemic acquired resistance	6.58E-03
97	GO:0045454: cell redox homeostasis	6.61E-03
98	GO:0030968: endoplasmic reticulum unfolded protein response	6.81E-03
99	GO:0009699: phenylpropanoid biosynthetic process	6.81E-03
100	GO:0006002: fructose 6-phosphate metabolic process	6.81E-03
101	GO:0015996: chlorophyll catabolic process	6.81E-03
102	GO:0009657: plastid organization	6.81E-03
103	GO:0010417: glucuronoxylan biosynthetic process	6.81E-03
104	GO:0009097: isoleucine biosynthetic process	6.81E-03
105	GO:0006888: ER to Golgi vesicle-mediated transport	6.94E-03
106	GO:0009056: catabolic process	7.73E-03
107	GO:0015780: nucleotide-sugar transport	7.73E-03
108	GO:0006499: N-terminal protein myristoylation	8.49E-03
109	GO:0009407: toxin catabolic process	8.49E-03
110	GO:0051453: regulation of intracellular pH	8.68E-03
111	GO:0010205: photoinhibition	8.68E-03
112	GO:0009098: leucine biosynthetic process	8.68E-03
113	GO:0009751: response to salicylic acid	8.89E-03
114	GO:0010043: response to zinc ion	8.91E-03
115	GO:0009688: abscisic acid biosynthetic process	9.69E-03
116	GO:0000103: sulfate assimilation	9.69E-03
117	GO:0006032: chitin catabolic process	9.69E-03
118	GO:0006457: protein folding	9.91E-03
119	GO:0034599: cellular response to oxidative stress	1.02E-02
120	GO:0006099: tricarboxylic acid cycle	1.02E-02
121	GO:0000272: polysaccharide catabolic process	1.07E-02
122	GO:0009617: response to bacterium	1.14E-02
123	GO:0042542: response to hydrogen peroxide	1.21E-02
124	GO:0009651: response to salt stress	1.24E-02
125	GO:0009744: response to sucrose	1.26E-02
126	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.29E-02
127	GO:0006626: protein targeting to mitochondrion	1.29E-02
128	GO:0010102: lateral root morphogenesis	1.29E-02
129	GO:0000209: protein polyubiquitination	1.31E-02
130	GO:0009644: response to high light intensity	1.37E-02
131	GO:0009266: response to temperature stimulus	1.41E-02
132	GO:0010053: root epidermal cell differentiation	1.53E-02
133	GO:0007030: Golgi organization	1.53E-02
134	GO:0019853: L-ascorbic acid biosynthetic process	1.53E-02
135	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.53E-02
136	GO:0000162: tryptophan biosynthetic process	1.65E-02
137	GO:0034976: response to endoplasmic reticulum stress	1.65E-02
138	GO:0010073: meristem maintenance	1.90E-02
139	GO:0008299: isoprenoid biosynthetic process	1.90E-02
140	GO:0006874: cellular calcium ion homeostasis	1.90E-02
141	GO:0016998: cell wall macromolecule catabolic process	2.03E-02
142	GO:0019915: lipid storage	2.03E-02
143	GO:0009269: response to desiccation	2.03E-02
144	GO:0009555: pollen development	2.16E-02
145	GO:0006979: response to oxidative stress	2.16E-02
146	GO:0006730: one-carbon metabolic process	2.17E-02
147	GO:0019748: secondary metabolic process	2.17E-02
148	GO:0009814: defense response, incompatible interaction	2.17E-02
149	GO:0030433: ubiquitin-dependent ERAD pathway	2.17E-02
150	GO:0009620: response to fungus	2.22E-02
151	GO:0010227: floral organ abscission	2.31E-02
152	GO:0009693: ethylene biosynthetic process	2.31E-02
153	GO:0009561: megagametogenesis	2.45E-02
154	GO:0009306: protein secretion	2.45E-02
155	GO:0016117: carotenoid biosynthetic process	2.60E-02
156	GO:0042631: cellular response to water deprivation	2.74E-02
157	GO:0006814: sodium ion transport	3.05E-02
158	GO:0009646: response to absence of light	3.05E-02
159	GO:0009851: auxin biosynthetic process	3.20E-02
160	GO:0006623: protein targeting to vacuole	3.20E-02
161	GO:0010193: response to ozone	3.36E-02
162	GO:0006635: fatty acid beta-oxidation	3.36E-02
163	GO:0016032: viral process	3.52E-02
164	GO:0030163: protein catabolic process	3.69E-02
165	GO:0071281: cellular response to iron ion	3.69E-02
166	GO:0019760: glucosinolate metabolic process	3.85E-02
167	GO:0006464: cellular protein modification process	3.85E-02
168	GO:0071805: potassium ion transmembrane transport	4.02E-02
169	GO:0010150: leaf senescence	4.19E-02
170	GO:0045490: pectin catabolic process	4.19E-02
171	GO:0009615: response to virus	4.37E-02
172	GO:0001666: response to hypoxia	4.37E-02
173	GO:0009816: defense response to bacterium, incompatible interaction	4.54E-02
174	GO:0006906: vesicle fusion	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0005046: KDEL sequence binding	0.00E+00
2	GO:0061133: endopeptidase activator activity	0.00E+00
3	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
4	GO:0016504: peptidase activator activity	0.00E+00
5	GO:0034338: short-chain carboxylesterase activity	0.00E+00
6	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
7	GO:0070577: lysine-acetylated histone binding	0.00E+00
8	GO:0047844: deoxycytidine deaminase activity	0.00E+00
9	GO:0008320: protein transmembrane transporter activity	6.86E-06
10	GO:0070628: proteasome binding	7.06E-05
11	GO:0102293: pheophytinase b activity	3.34E-04
12	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	3.34E-04
13	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	3.34E-04
14	GO:0016229: steroid dehydrogenase activity	3.34E-04
15	GO:0050577: GDP-L-fucose synthase activity	3.34E-04
16	GO:0010179: IAA-Ala conjugate hydrolase activity	3.34E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.34E-04
18	GO:0070401: NADP+ binding	3.34E-04
19	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	3.34E-04
20	GO:0004476: mannose-6-phosphate isomerase activity	3.34E-04
21	GO:0004348: glucosylceramidase activity	3.34E-04
22	GO:0030942: endoplasmic reticulum signal peptide binding	3.34E-04
23	GO:1901677: phosphate transmembrane transporter activity	7.29E-04
24	GO:0015117: thiosulfate transmembrane transporter activity	7.29E-04
25	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	7.29E-04
26	GO:0047746: chlorophyllase activity	7.29E-04
27	GO:0010331: gibberellin binding	7.29E-04
28	GO:0010297: heteropolysaccharide binding	7.29E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	7.29E-04
30	GO:0050347: trans-octaprenyltranstransferase activity	7.29E-04
31	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	7.29E-04
32	GO:0008805: carbon-monoxide oxygenase activity	7.29E-04
33	GO:0008428: ribonuclease inhibitor activity	7.29E-04
34	GO:1990585: hydroxyproline O-arabinosyltransferase activity	7.29E-04
35	GO:0052691: UDP-arabinopyranose mutase activity	7.29E-04
36	GO:0015035: protein disulfide oxidoreductase activity	8.51E-04
37	GO:0004478: methionine adenosyltransferase activity	1.18E-03
38	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.18E-03
39	GO:0005310: dicarboxylic acid transmembrane transporter activity	1.18E-03
40	GO:0015141: succinate transmembrane transporter activity	1.18E-03
41	GO:0003746: translation elongation factor activity	1.43E-03
42	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.70E-03
43	GO:0052656: L-isoleucine transaminase activity	1.70E-03
44	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.70E-03
45	GO:0052654: L-leucine transaminase activity	1.70E-03
46	GO:0017077: oxidative phosphorylation uncoupler activity	1.70E-03
47	GO:0052655: L-valine transaminase activity	1.70E-03
48	GO:0015131: oxaloacetate transmembrane transporter activity	1.70E-03
49	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.70E-03
50	GO:0005460: UDP-glucose transmembrane transporter activity	1.70E-03
51	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.70E-03
52	GO:0016866: intramolecular transferase activity	2.28E-03
53	GO:0009916: alternative oxidase activity	2.28E-03
54	GO:0004659: prenyltransferase activity	2.28E-03
55	GO:0046923: ER retention sequence binding	2.28E-03
56	GO:0004084: branched-chain-amino-acid transaminase activity	2.28E-03
57	GO:0004031: aldehyde oxidase activity	2.28E-03
58	GO:0050302: indole-3-acetaldehyde oxidase activity	2.28E-03
59	GO:0047134: protein-disulfide reductase activity	2.84E-03
60	GO:0004040: amidase activity	2.91E-03
61	GO:0005459: UDP-galactose transmembrane transporter activity	2.91E-03
62	GO:0008948: oxaloacetate decarboxylase activity	2.91E-03
63	GO:0004623: phospholipase A2 activity	2.91E-03
64	GO:0004791: thioredoxin-disulfide reductase activity	3.55E-03
65	GO:0035252: UDP-xylosyltransferase activity	3.60E-03
66	GO:0004656: procollagen-proline 4-dioxygenase activity	4.33E-03
67	GO:0004126: cytidine deaminase activity	4.33E-03
68	GO:0003950: NAD+ ADP-ribosyltransferase activity	4.33E-03
69	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.64E-03
70	GO:0043295: glutathione binding	5.11E-03
71	GO:0003872: 6-phosphofructokinase activity	5.11E-03
72	GO:0015140: malate transmembrane transporter activity	5.11E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	5.94E-03
74	GO:0004708: MAP kinase kinase activity	5.94E-03
75	GO:0004714: transmembrane receptor protein tyrosine kinase activity	5.94E-03
76	GO:0008312: 7S RNA binding	5.94E-03
77	GO:0052747: sinapyl alcohol dehydrogenase activity	5.94E-03
78	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.70E-03
79	GO:0004568: chitinase activity	9.69E-03
80	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	9.77E-03
81	GO:0004161: dimethylallyltranstransferase activity	1.07E-02
82	GO:0015386: potassium:proton antiporter activity	1.07E-02
83	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.18E-02
84	GO:0015116: sulfate transmembrane transporter activity	1.18E-02
85	GO:0004364: glutathione transferase activity	1.21E-02
86	GO:0031624: ubiquitin conjugating enzyme binding	1.41E-02
87	GO:0005525: GTP binding	1.50E-02
88	GO:0004970: ionotropic glutamate receptor activity	1.53E-02
89	GO:0005217: intracellular ligand-gated ion channel activity	1.53E-02
90	GO:0004190: aspartic-type endopeptidase activity	1.53E-02
91	GO:0008061: chitin binding	1.53E-02
92	GO:0003712: transcription cofactor activity	1.53E-02
93	GO:0016887: ATPase activity	1.76E-02
94	GO:0051536: iron-sulfur cluster binding	1.77E-02
95	GO:0031418: L-ascorbic acid binding	1.77E-02
96	GO:0043130: ubiquitin binding	1.77E-02
97	GO:0031625: ubiquitin protein ligase binding	1.89E-02
98	GO:0050660: flavin adenine dinucleotide binding	1.91E-02
99	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.17E-02
100	GO:0061630: ubiquitin protein ligase activity	2.22E-02
101	GO:0022857: transmembrane transporter activity	2.29E-02
102	GO:0016760: cellulose synthase (UDP-forming) activity	2.31E-02
103	GO:0051082: unfolded protein binding	2.43E-02
104	GO:0003727: single-stranded RNA binding	2.45E-02
105	GO:0003756: protein disulfide isomerase activity	2.45E-02
106	GO:0005102: receptor binding	2.60E-02
107	GO:0001085: RNA polymerase II transcription factor binding	2.89E-02
108	GO:0016853: isomerase activity	3.05E-02
109	GO:0050662: coenzyme binding	3.05E-02
110	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.13E-02
111	GO:0004872: receptor activity	3.20E-02
112	GO:0008270: zinc ion binding	3.27E-02
113	GO:0015385: sodium:proton antiporter activity	3.69E-02
114	GO:0009055: electron carrier activity	3.70E-02
115	GO:0016791: phosphatase activity	3.85E-02
116	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.02E-02
117	GO:0008237: metallopeptidase activity	4.02E-02
118	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.02E-02
119	GO:0016597: amino acid binding	4.19E-02
120	GO:0051213: dioxygenase activity	4.37E-02
121	GO:0008375: acetylglucosaminyltransferase activity	4.72E-02
122	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.90E-02
123	GO:0004806: triglyceride lipase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0046862: chromoplast membrane	0.00E+00
2	GO:0005794: Golgi apparatus	2.79E-09
3	GO:0005783: endoplasmic reticulum	6.12E-09
4	GO:0005789: endoplasmic reticulum membrane	3.26E-08
5	GO:0005788: endoplasmic reticulum lumen	8.61E-05
6	GO:0005801: cis-Golgi network	2.18E-04
7	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.83E-04
8	GO:0000138: Golgi trans cisterna	3.34E-04
9	GO:0045252: oxoglutarate dehydrogenase complex	3.34E-04
10	GO:0005811: lipid particle	4.36E-04
11	GO:0031901: early endosome membrane	5.24E-04
12	GO:0005768: endosome	5.50E-04
13	GO:0032580: Golgi cisterna membrane	6.11E-04
14	GO:0016021: integral component of membrane	6.26E-04
15	GO:0030134: ER to Golgi transport vesicle	7.29E-04
16	GO:0005774: vacuolar membrane	7.94E-04
17	GO:0005886: plasma membrane	8.19E-04
18	GO:0030130: clathrin coat of trans-Golgi network vesicle	1.18E-03
19	GO:0030132: clathrin coat of coated pit	1.18E-03
20	GO:0030658: transport vesicle membrane	1.70E-03
21	GO:0005737: cytoplasm	1.86E-03
22	GO:0005829: cytosol	1.92E-03
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.62E-03
24	GO:0005945: 6-phosphofructokinase complex	2.91E-03
25	GO:0030127: COPII vesicle coat	3.60E-03
26	GO:0030173: integral component of Golgi membrane	4.33E-03
27	GO:0016592: mediator complex	4.35E-03
28	GO:0005802: trans-Golgi network	4.50E-03
29	GO:0009986: cell surface	5.11E-03
30	GO:0031982: vesicle	5.94E-03
31	GO:0005742: mitochondrial outer membrane translocase complex	6.81E-03
32	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.81E-03
33	GO:0030665: clathrin-coated vesicle membrane	8.68E-03
34	GO:0017119: Golgi transport complex	9.69E-03
35	GO:0008541: proteasome regulatory particle, lid subcomplex	1.07E-02
36	GO:0031902: late endosome membrane	1.16E-02
37	GO:0005795: Golgi stack	1.53E-02
38	GO:0030176: integral component of endoplasmic reticulum membrane	1.53E-02
39	GO:0070469: respiratory chain	1.90E-02
40	GO:0005839: proteasome core complex	2.03E-02
41	GO:0005623: cell	3.13E-02
42	GO:0019898: extrinsic component of membrane	3.20E-02
43	GO:0009504: cell plate	3.20E-02
44	GO:0005773: vacuole	3.47E-02
45	GO:0009506: plasmodesma	3.52E-02
46	GO:0071944: cell periphery	3.69E-02
47	GO:0016020: membrane	3.90E-02
48	GO:0005667: transcription factor complex	4.72E-02