co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0046486: glycerolipid metabolic process	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0006438: valyl-tRNA aminoacylation	5.26E-04
8	GO:0019478: D-amino acid catabolic process	5.26E-04
9	GO:0043087: regulation of GTPase activity	5.26E-04
10	GO:0051013: microtubule severing	5.26E-04
11	GO:0034757: negative regulation of iron ion transport	5.26E-04
12	GO:0010726: positive regulation of hydrogen peroxide metabolic process	5.26E-04
13	GO:0009958: positive gravitropism	8.58E-04
14	GO:0000373: Group II intron splicing	1.01E-03
15	GO:0006650: glycerophospholipid metabolic process	1.13E-03
16	GO:0010271: regulation of chlorophyll catabolic process	1.13E-03
17	GO:0001736: establishment of planar polarity	1.13E-03
18	GO:0009786: regulation of asymmetric cell division	1.13E-03
19	GO:0010024: phytochromobilin biosynthetic process	1.13E-03
20	GO:0043039: tRNA aminoacylation	1.13E-03
21	GO:0010583: response to cyclopentenone	1.21E-03
22	GO:0006782: protoporphyrinogen IX biosynthetic process	1.38E-03
23	GO:0048829: root cap development	1.38E-03
24	GO:0010582: floral meristem determinacy	1.83E-03
25	GO:0080117: secondary growth	1.85E-03
26	GO:0030029: actin filament-based process	1.85E-03
27	GO:0045910: negative regulation of DNA recombination	1.85E-03
28	GO:0046168: glycerol-3-phosphate catabolic process	1.85E-03
29	GO:0009825: multidimensional cell growth	2.63E-03
30	GO:0009658: chloroplast organization	2.65E-03
31	GO:0010311: lateral root formation	2.67E-03
32	GO:0009800: cinnamic acid biosynthetic process	2.69E-03
33	GO:0006424: glutamyl-tRNA aminoacylation	2.69E-03
34	GO:2000904: regulation of starch metabolic process	2.69E-03
35	GO:0045017: glycerolipid biosynthetic process	2.69E-03
36	GO:0051513: regulation of monopolar cell growth	2.69E-03
37	GO:0009102: biotin biosynthetic process	2.69E-03
38	GO:0051639: actin filament network formation	2.69E-03
39	GO:0034059: response to anoxia	2.69E-03
40	GO:0010239: chloroplast mRNA processing	2.69E-03
41	GO:0044211: CTP salvage	2.69E-03
42	GO:0007276: gamete generation	2.69E-03
43	GO:0006072: glycerol-3-phosphate metabolic process	2.69E-03
44	GO:0006863: purine nucleobase transport	2.94E-03
45	GO:0051017: actin filament bundle assembly	3.26E-03
46	GO:0044206: UMP salvage	3.62E-03
47	GO:0006021: inositol biosynthetic process	3.62E-03
48	GO:0009956: radial pattern formation	3.62E-03
49	GO:0051764: actin crosslink formation	3.62E-03
50	GO:0009734: auxin-activated signaling pathway	4.36E-03
51	GO:0080110: sporopollenin biosynthetic process	4.65E-03
52	GO:0009696: salicylic acid metabolic process	4.65E-03
53	GO:0009107: lipoate biosynthetic process	4.65E-03
54	GO:0010158: abaxial cell fate specification	4.65E-03
55	GO:0009926: auxin polar transport	4.70E-03
56	GO:0042127: regulation of cell proliferation	5.15E-03
57	GO:0045892: negative regulation of transcription, DNA-templated	5.46E-03
58	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.76E-03
59	GO:0006559: L-phenylalanine catabolic process	5.76E-03
60	GO:0006206: pyrimidine nucleobase metabolic process	5.76E-03
61	GO:0048831: regulation of shoot system development	5.76E-03
62	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	5.76E-03
63	GO:0003006: developmental process involved in reproduction	5.76E-03
64	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	5.76E-03
65	GO:0010942: positive regulation of cell death	5.76E-03
66	GO:0016554: cytidine to uridine editing	5.76E-03
67	GO:0048509: regulation of meristem development	6.95E-03
68	GO:0010019: chloroplast-nucleus signaling pathway	6.95E-03
69	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	6.95E-03
70	GO:0009648: photoperiodism	6.95E-03
71	GO:0007018: microtubule-based movement	7.01E-03
72	GO:0010098: suspensor development	8.23E-03
73	GO:0000082: G1/S transition of mitotic cell cycle	8.23E-03
74	GO:0010444: guard mother cell differentiation	8.23E-03
75	GO:0009610: response to symbiotic fungus	8.23E-03
76	GO:0006955: immune response	8.23E-03
77	GO:1900056: negative regulation of leaf senescence	8.23E-03
78	GO:0010050: vegetative phase change	8.23E-03
79	GO:0046620: regulation of organ growth	9.58E-03
80	GO:0006353: DNA-templated transcription, termination	9.58E-03
81	GO:0009850: auxin metabolic process	9.58E-03
82	GO:0010492: maintenance of shoot apical meristem identity	9.58E-03
83	GO:0000105: histidine biosynthetic process	9.58E-03
84	GO:0009231: riboflavin biosynthetic process	9.58E-03
85	GO:0009657: plastid organization	1.10E-02
86	GO:0032544: plastid translation	1.10E-02
87	GO:0071482: cellular response to light stimulus	1.10E-02
88	GO:0007186: G-protein coupled receptor signaling pathway	1.10E-02
89	GO:0048507: meristem development	1.25E-02
90	GO:0046916: cellular transition metal ion homeostasis	1.25E-02
91	GO:0048589: developmental growth	1.25E-02
92	GO:0009056: catabolic process	1.25E-02
93	GO:0009733: response to auxin	1.29E-02
94	GO:0009627: systemic acquired resistance	1.31E-02
95	GO:0015995: chlorophyll biosynthetic process	1.38E-02
96	GO:0016571: histone methylation	1.41E-02
97	GO:0016573: histone acetylation	1.41E-02
98	GO:0006779: porphyrin-containing compound biosynthetic process	1.41E-02
99	GO:1900865: chloroplast RNA modification	1.41E-02
100	GO:0006468: protein phosphorylation	1.42E-02
101	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.50E-02
102	GO:0006535: cysteine biosynthetic process from serine	1.57E-02
103	GO:0009641: shade avoidance	1.57E-02
104	GO:0006298: mismatch repair	1.57E-02
105	GO:0010192: mucilage biosynthetic process	1.57E-02
106	GO:0009832: plant-type cell wall biogenesis	1.61E-02
107	GO:0000160: phosphorelay signal transduction system	1.61E-02
108	GO:0009089: lysine biosynthetic process via diaminopimelate	1.74E-02
109	GO:0009750: response to fructose	1.74E-02
110	GO:0016485: protein processing	1.74E-02
111	GO:0048765: root hair cell differentiation	1.74E-02
112	GO:0006865: amino acid transport	1.86E-02
113	GO:0005983: starch catabolic process	1.92E-02
114	GO:0010152: pollen maturation	1.92E-02
115	GO:0045037: protein import into chloroplast stroma	1.92E-02
116	GO:0006790: sulfur compound metabolic process	1.92E-02
117	GO:0040008: regulation of growth	2.05E-02
118	GO:0010102: lateral root morphogenesis	2.10E-02
119	GO:0009691: cytokinin biosynthetic process	2.10E-02
120	GO:0010020: chloroplast fission	2.29E-02
121	GO:0010207: photosystem II assembly	2.29E-02
122	GO:0009933: meristem structural organization	2.29E-02
123	GO:0009887: animal organ morphogenesis	2.29E-02
124	GO:0010540: basipetal auxin transport	2.29E-02
125	GO:0009266: response to temperature stimulus	2.29E-02
126	GO:0048467: gynoecium development	2.29E-02
127	GO:0005975: carbohydrate metabolic process	2.43E-02
128	GO:0080188: RNA-directed DNA methylation	2.49E-02
129	GO:0046854: phosphatidylinositol phosphorylation	2.49E-02
130	GO:0009744: response to sucrose	2.52E-02
131	GO:0009833: plant-type primary cell wall biogenesis	2.69E-02
132	GO:0009636: response to toxic substance	2.83E-02
133	GO:0009965: leaf morphogenesis	2.83E-02
134	GO:0030150: protein import into mitochondrial matrix	2.89E-02
135	GO:0006338: chromatin remodeling	2.89E-02
136	GO:0006289: nucleotide-excision repair	2.89E-02
137	GO:0019344: cysteine biosynthetic process	2.89E-02
138	GO:0043622: cortical microtubule organization	3.10E-02
139	GO:0006418: tRNA aminoacylation for protein translation	3.10E-02
140	GO:0003333: amino acid transmembrane transport	3.32E-02
141	GO:0016998: cell wall macromolecule catabolic process	3.32E-02
142	GO:0006306: DNA methylation	3.32E-02
143	GO:0009736: cytokinin-activated signaling pathway	3.39E-02
144	GO:0016226: iron-sulfur cluster assembly	3.54E-02
145	GO:0035428: hexose transmembrane transport	3.54E-02
146	GO:0007005: mitochondrion organization	3.54E-02
147	GO:0009909: regulation of flower development	3.75E-02
148	GO:0071215: cellular response to abscisic acid stimulus	3.77E-02
149	GO:0009686: gibberellin biosynthetic process	3.77E-02
150	GO:0010082: regulation of root meristem growth	3.77E-02
151	GO:0006284: base-excision repair	4.00E-02
152	GO:0010091: trichome branching	4.00E-02
153	GO:0010584: pollen exine formation	4.00E-02
154	GO:0048443: stamen development	4.00E-02
155	GO:0048316: seed development	4.13E-02
156	GO:0070417: cellular response to cold	4.23E-02
157	GO:0016117: carotenoid biosynthetic process	4.23E-02
158	GO:0000271: polysaccharide biosynthetic process	4.47E-02
159	GO:0008033: tRNA processing	4.47E-02
160	GO:0010087: phloem or xylem histogenesis	4.47E-02
161	GO:0000226: microtubule cytoskeleton organization	4.47E-02
162	GO:0010305: leaf vascular tissue pattern formation	4.72E-02
163	GO:0010182: sugar mediated signaling pathway	4.72E-02
164	GO:0046323: glucose import	4.72E-02
165	GO:0009741: response to brassinosteroid	4.72E-02
166	GO:0045489: pectin biosynthetic process	4.72E-02
167	GO:0048544: recognition of pollen	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
5	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
6	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
7	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
8	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
9	GO:0001872: (1->3)-beta-D-glucan binding	8.72E-05
10	GO:0010011: auxin binding	1.51E-04
11	GO:0004818: glutamate-tRNA ligase activity	5.26E-04
12	GO:0008568: microtubule-severing ATPase activity	5.26E-04
13	GO:0052381: tRNA dimethylallyltransferase activity	5.26E-04
14	GO:0004832: valine-tRNA ligase activity	5.26E-04
15	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.26E-04
16	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.26E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.26E-04
18	GO:0005227: calcium activated cation channel activity	5.26E-04
19	GO:0008836: diaminopimelate decarboxylase activity	5.26E-04
20	GO:0042834: peptidoglycan binding	5.26E-04
21	GO:0016301: kinase activity	1.08E-03
22	GO:0008934: inositol monophosphate 1-phosphatase activity	1.13E-03
23	GO:0052833: inositol monophosphate 4-phosphatase activity	1.13E-03
24	GO:0019156: isoamylase activity	1.13E-03
25	GO:0050736: O-malonyltransferase activity	1.13E-03
26	GO:0009884: cytokinin receptor activity	1.13E-03
27	GO:0050017: L-3-cyanoalanine synthase activity	1.13E-03
28	GO:0017118: lipoyltransferase activity	1.13E-03
29	GO:0010296: prenylcysteine methylesterase activity	1.13E-03
30	GO:0016415: octanoyltransferase activity	1.13E-03
31	GO:0004047: aminomethyltransferase activity	1.13E-03
32	GO:0052832: inositol monophosphate 3-phosphatase activity	1.13E-03
33	GO:0004109: coproporphyrinogen oxidase activity	1.13E-03
34	GO:0008805: carbon-monoxide oxygenase activity	1.13E-03
35	GO:0005034: osmosensor activity	1.85E-03
36	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.85E-03
37	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.85E-03
38	GO:0045548: phenylalanine ammonia-lyase activity	1.85E-03
39	GO:0003913: DNA photolyase activity	1.85E-03
40	GO:0009982: pseudouridine synthase activity	2.08E-03
41	GO:0005096: GTPase activator activity	2.67E-03
42	GO:0080031: methyl salicylate esterase activity	2.69E-03
43	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.69E-03
44	GO:0003723: RNA binding	3.51E-03
45	GO:0005345: purine nucleobase transmembrane transporter activity	3.60E-03
46	GO:0070628: proteasome binding	3.62E-03
47	GO:0019199: transmembrane receptor protein kinase activity	3.62E-03
48	GO:0004845: uracil phosphoribosyltransferase activity	3.62E-03
49	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.62E-03
50	GO:0010328: auxin influx transmembrane transporter activity	3.62E-03
51	GO:0005471: ATP:ADP antiporter activity	4.65E-03
52	GO:0008725: DNA-3-methyladenine glycosylase activity	4.65E-03
53	GO:0031593: polyubiquitin binding	5.76E-03
54	GO:0004556: alpha-amylase activity	5.76E-03
55	GO:0004462: lactoylglutathione lyase activity	5.76E-03
56	GO:0030983: mismatched DNA binding	5.76E-03
57	GO:0080030: methyl indole-3-acetate esterase activity	5.76E-03
58	GO:0004709: MAP kinase kinase kinase activity	5.76E-03
59	GO:0042803: protein homodimerization activity	5.77E-03
60	GO:0016832: aldehyde-lyase activity	6.95E-03
61	GO:0004849: uridine kinase activity	6.95E-03
62	GO:0019900: kinase binding	6.95E-03
63	GO:0004124: cysteine synthase activity	6.95E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.95E-03
65	GO:0009881: photoreceptor activity	8.23E-03
66	GO:0051015: actin filament binding	9.20E-03
67	GO:0016759: cellulose synthase activity	9.80E-03
68	GO:0003684: damaged DNA binding	9.80E-03
69	GO:0046914: transition metal ion binding	1.10E-02
70	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.18E-02
71	GO:0030247: polysaccharide binding	1.38E-02
72	GO:0004673: protein histidine kinase activity	1.57E-02
73	GO:0004674: protein serine/threonine kinase activity	1.61E-02
74	GO:0004222: metalloendopeptidase activity	1.69E-02
75	GO:0000049: tRNA binding	1.92E-02
76	GO:0004871: signal transducer activity	2.00E-02
77	GO:0003725: double-stranded RNA binding	2.10E-02
78	GO:0015266: protein channel activity	2.10E-02
79	GO:0000155: phosphorelay sensor kinase activity	2.10E-02
80	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.13E-02
81	GO:0008061: chitin binding	2.49E-02
82	GO:0003712: transcription cofactor activity	2.49E-02
83	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.69E-02
84	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.69E-02
85	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.69E-02
86	GO:0043621: protein self-association	2.72E-02
87	GO:0016740: transferase activity	2.89E-02
88	GO:0008134: transcription factor binding	2.89E-02
89	GO:0043130: ubiquitin binding	2.89E-02
90	GO:0051087: chaperone binding	3.10E-02
91	GO:0043424: protein histidine kinase binding	3.10E-02
92	GO:0004707: MAP kinase activity	3.32E-02
93	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.54E-02
94	GO:0015171: amino acid transmembrane transporter activity	3.75E-02
95	GO:0003777: microtubule motor activity	3.75E-02
96	GO:0030570: pectate lyase activity	3.77E-02
97	GO:0016760: cellulose synthase (UDP-forming) activity	3.77E-02
98	GO:0005515: protein binding	3.87E-02
99	GO:0004812: aminoacyl-tRNA ligase activity	4.23E-02
100	GO:0003779: actin binding	4.67E-02
101	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.72E-02
102	GO:0005355: glucose transmembrane transporter activity	4.97E-02
103	GO:0010181: FMN binding	4.97E-02
104	GO:0050662: coenzyme binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0009349: riboflavin synthase complex	0.00E+00
4	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
5	GO:0035452: extrinsic component of plastid membrane	0.00E+00
6	GO:0009986: cell surface	5.54E-04
7	GO:0009569: chloroplast starch grain	1.13E-03
8	GO:0009513: etioplast	1.13E-03
9	GO:0009507: chloroplast	1.68E-03
10	GO:0009509: chromoplast	1.85E-03
11	GO:0030139: endocytic vesicle	1.85E-03
12	GO:0009570: chloroplast stroma	1.89E-03
13	GO:0009707: chloroplast outer membrane	2.51E-03
14	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.69E-03
15	GO:0032585: multivesicular body membrane	2.69E-03
16	GO:0032432: actin filament bundle	2.69E-03
17	GO:0005871: kinesin complex	5.59E-03
18	GO:0046658: anchored component of plasma membrane	8.08E-03
19	GO:0031305: integral component of mitochondrial inner membrane	9.58E-03
20	GO:0009501: amyloplast	9.58E-03
21	GO:0005886: plasma membrane	1.37E-02
22	GO:0005884: actin filament	1.74E-02
23	GO:0016602: CCAAT-binding factor complex	2.10E-02
24	GO:0009574: preprophase band	2.10E-02
25	GO:0005578: proteinaceous extracellular matrix	2.10E-02
26	GO:0030095: chloroplast photosystem II	2.29E-02
27	GO:0031977: thylakoid lumen	2.32E-02
28	GO:0000419: DNA-directed RNA polymerase V complex	2.69E-02
29	GO:0005875: microtubule associated complex	2.69E-02
30	GO:0005856: cytoskeleton	2.83E-02
31	GO:0009654: photosystem II oxygen evolving complex	3.10E-02
32	GO:0015629: actin cytoskeleton	3.77E-02
33	GO:0009536: plastid	3.88E-02
34	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.00E-02
35	GO:0031225: anchored component of membrane	4.33E-02
36	GO:0031969: chloroplast membrane	4.87E-02