Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G04680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030155: regulation of cell adhesion0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0017038: protein import0.00E+00
4GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
5GO:0090279: regulation of calcium ion import0.00E+00
6GO:1902326: positive regulation of chlorophyll biosynthetic process0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
10GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
11GO:0018023: peptidyl-lysine trimethylation0.00E+00
12GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
13GO:0008298: intracellular mRNA localization0.00E+00
14GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
15GO:0071474: cellular hyperosmotic response0.00E+00
16GO:1905421: regulation of plant organ morphogenesis0.00E+00
17GO:0015979: photosynthesis8.04E-08
18GO:1901259: chloroplast rRNA processing4.90E-06
19GO:0010027: thylakoid membrane organization5.28E-06
20GO:0071482: cellular response to light stimulus1.69E-05
21GO:0005977: glycogen metabolic process1.97E-05
22GO:2001141: regulation of RNA biosynthetic process4.34E-05
23GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.34E-05
24GO:0009765: photosynthesis, light harvesting7.72E-05
25GO:0010021: amylopectin biosynthetic process7.72E-05
26GO:0009767: photosynthetic electron transport chain7.84E-05
27GO:0009228: thiamine biosynthetic process1.74E-04
28GO:0009658: chloroplast organization1.84E-04
29GO:0010189: vitamin E biosynthetic process2.36E-04
30GO:0000476: maturation of 4.5S rRNA3.52E-04
31GO:0009443: pyridoxal 5'-phosphate salvage3.52E-04
32GO:0000967: rRNA 5'-end processing3.52E-04
33GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.52E-04
34GO:0043953: protein transport by the Tat complex3.52E-04
35GO:0051775: response to redox state3.52E-04
36GO:0000481: maturation of 5S rRNA3.52E-04
37GO:0006659: phosphatidylserine biosynthetic process3.52E-04
38GO:0042371: vitamin K biosynthetic process3.52E-04
39GO:0065002: intracellular protein transmembrane transport3.52E-04
40GO:0071461: cellular response to redox state3.52E-04
41GO:0051247: positive regulation of protein metabolic process3.52E-04
42GO:0034337: RNA folding3.52E-04
43GO:2000905: negative regulation of starch metabolic process3.52E-04
44GO:0006605: protein targeting3.84E-04
45GO:0048564: photosystem I assembly3.84E-04
46GO:0032544: plastid translation4.70E-04
47GO:0009791: post-embryonic development4.83E-04
48GO:0019252: starch biosynthetic process4.83E-04
49GO:0080005: photosystem stoichiometry adjustment7.67E-04
50GO:0051645: Golgi localization7.67E-04
51GO:0060359: response to ammonium ion7.67E-04
52GO:0018026: peptidyl-lysine monomethylation7.67E-04
53GO:0060151: peroxisome localization7.67E-04
54GO:0034755: iron ion transmembrane transport7.67E-04
55GO:0071457: cellular response to ozone7.67E-04
56GO:1904143: positive regulation of carotenoid biosynthetic process7.67E-04
57GO:0051262: protein tetramerization7.67E-04
58GO:0034470: ncRNA processing7.67E-04
59GO:0019684: photosynthesis, light reaction8.95E-04
60GO:0043085: positive regulation of catalytic activity8.95E-04
61GO:0006352: DNA-templated transcription, initiation8.95E-04
62GO:0018119: peptidyl-cysteine S-nitrosylation8.95E-04
63GO:0055114: oxidation-reduction process9.59E-04
64GO:0015995: chlorophyll biosynthetic process1.03E-03
65GO:0018298: protein-chromophore linkage1.17E-03
66GO:0048281: inflorescence morphogenesis1.24E-03
67GO:0048586: regulation of long-day photoperiodism, flowering1.24E-03
68GO:0006954: inflammatory response1.24E-03
69GO:0090436: leaf pavement cell development1.24E-03
70GO:0051646: mitochondrion localization1.24E-03
71GO:0043157: response to cation stress1.24E-03
72GO:0048467: gynoecium development1.30E-03
73GO:0006107: oxaloacetate metabolic process1.79E-03
74GO:0009052: pentose-phosphate shunt, non-oxidative branch1.79E-03
75GO:0009226: nucleotide-sugar biosynthetic process1.79E-03
76GO:0046739: transport of virus in multicellular host1.79E-03
77GO:0010148: transpiration1.79E-03
78GO:0016556: mRNA modification1.79E-03
79GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.79E-03
80GO:0071484: cellular response to light intensity1.79E-03
81GO:0007017: microtubule-based process1.98E-03
82GO:0006810: transport2.15E-03
83GO:0010114: response to red light2.18E-03
84GO:0010107: potassium ion import2.40E-03
85GO:2000306: positive regulation of photomorphogenesis2.40E-03
86GO:0006109: regulation of carbohydrate metabolic process2.40E-03
87GO:0006546: glycine catabolic process2.40E-03
88GO:0006021: inositol biosynthetic process2.40E-03
89GO:0006734: NADH metabolic process2.40E-03
90GO:0010109: regulation of photosynthesis2.40E-03
91GO:0071486: cellular response to high light intensity2.40E-03
92GO:0080110: sporopollenin biosynthetic process3.07E-03
93GO:0006465: signal peptide processing3.07E-03
94GO:0071493: cellular response to UV-B3.07E-03
95GO:0098719: sodium ion import across plasma membrane3.07E-03
96GO:0006564: L-serine biosynthetic process3.07E-03
97GO:0010236: plastoquinone biosynthetic process3.07E-03
98GO:0045038: protein import into chloroplast thylakoid membrane3.07E-03
99GO:0043097: pyrimidine nucleoside salvage3.07E-03
100GO:0006206: pyrimidine nucleobase metabolic process3.79E-03
101GO:0032973: amino acid export3.79E-03
102GO:0000741: karyogamy3.79E-03
103GO:0050665: hydrogen peroxide biosynthetic process3.79E-03
104GO:0006751: glutathione catabolic process3.79E-03
105GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.79E-03
106GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.79E-03
107GO:0009959: negative gravitropism3.79E-03
108GO:0009646: response to absence of light3.83E-03
109GO:0008654: phospholipid biosynthetic process4.11E-03
110GO:0048280: vesicle fusion with Golgi apparatus4.57E-03
111GO:0009854: oxidative photosynthetic carbon pathway4.57E-03
112GO:0010019: chloroplast-nucleus signaling pathway4.57E-03
113GO:0080086: stamen filament development4.57E-03
114GO:0009955: adaxial/abaxial pattern specification4.57E-03
115GO:0032502: developmental process4.70E-03
116GO:0010090: trichome morphogenesis5.01E-03
117GO:0009409: response to cold5.23E-03
118GO:0070370: cellular heat acclimation5.40E-03
119GO:0009645: response to low light intensity stimulus5.40E-03
120GO:0009769: photosynthesis, light harvesting in photosystem II5.40E-03
121GO:0010103: stomatal complex morphogenesis5.40E-03
122GO:0009395: phospholipid catabolic process5.40E-03
123GO:0043090: amino acid import5.40E-03
124GO:0009690: cytokinin metabolic process6.27E-03
125GO:0010078: maintenance of root meristem identity6.27E-03
126GO:0032508: DNA duplex unwinding6.27E-03
127GO:0046620: regulation of organ growth6.27E-03
128GO:0055075: potassium ion homeostasis6.27E-03
129GO:0007155: cell adhesion6.27E-03
130GO:0009627: systemic acquired resistance7.12E-03
131GO:0001558: regulation of cell growth7.19E-03
132GO:0019430: removal of superoxide radicals7.19E-03
133GO:0010497: plasmodesmata-mediated intercellular transport7.19E-03
134GO:0009657: plastid organization7.19E-03
135GO:0010204: defense response signaling pathway, resistance gene-independent7.19E-03
136GO:0043562: cellular response to nitrogen levels7.19E-03
137GO:0017004: cytochrome complex assembly7.19E-03
138GO:0080144: amino acid homeostasis8.16E-03
139GO:0090333: regulation of stomatal closure8.16E-03
140GO:0006754: ATP biosynthetic process8.16E-03
141GO:0051453: regulation of intracellular pH9.17E-03
142GO:0006896: Golgi to vacuole transport1.02E-02
143GO:0006949: syncytium formation1.02E-02
144GO:0009089: lysine biosynthetic process via diaminopimelate1.13E-02
145GO:0009773: photosynthetic electron transport in photosystem I1.13E-02
146GO:0006879: cellular iron ion homeostasis1.13E-02
147GO:0009684: indoleacetic acid biosynthetic process1.13E-02
148GO:0016024: CDP-diacylglycerol biosynthetic process1.25E-02
149GO:0030048: actin filament-based movement1.37E-02
150GO:0010588: cotyledon vascular tissue pattern formation1.37E-02
151GO:0010628: positive regulation of gene expression1.37E-02
152GO:0006108: malate metabolic process1.37E-02
153GO:0009644: response to high light intensity1.48E-02
154GO:0010207: photosystem II assembly1.49E-02
155GO:0010143: cutin biosynthetic process1.49E-02
156GO:0010020: chloroplast fission1.49E-02
157GO:0019253: reductive pentose-phosphate cycle1.49E-02
158GO:0019853: L-ascorbic acid biosynthetic process1.61E-02
159GO:0010030: positive regulation of seed germination1.61E-02
160GO:0009664: plant-type cell wall organization1.72E-02
161GO:0005975: carbohydrate metabolic process1.86E-02
162GO:0009944: polarity specification of adaxial/abaxial axis1.88E-02
163GO:0009768: photosynthesis, light harvesting in photosystem I2.01E-02
164GO:0051302: regulation of cell division2.01E-02
165GO:0009735: response to cytokinin2.12E-02
166GO:0019915: lipid storage2.15E-02
167GO:0061077: chaperone-mediated protein folding2.15E-02
168GO:0009269: response to desiccation2.15E-02
169GO:0016114: terpenoid biosynthetic process2.15E-02
170GO:0010431: seed maturation2.15E-02
171GO:0006730: one-carbon metabolic process2.29E-02
172GO:0030245: cellulose catabolic process2.29E-02
173GO:0009416: response to light stimulus2.42E-02
174GO:0009686: gibberellin biosynthetic process2.44E-02
175GO:0001944: vasculature development2.44E-02
176GO:0006012: galactose metabolic process2.44E-02
177GO:0010584: pollen exine formation2.59E-02
178GO:0009561: megagametogenesis2.59E-02
179GO:0009306: protein secretion2.59E-02
180GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.74E-02
181GO:0042147: retrograde transport, endosome to Golgi2.74E-02
182GO:0016117: carotenoid biosynthetic process2.74E-02
183GO:0042631: cellular response to water deprivation2.90E-02
184GO:0080022: primary root development2.90E-02
185GO:0010087: phloem or xylem histogenesis2.90E-02
186GO:0009958: positive gravitropism3.06E-02
187GO:0006885: regulation of pH3.06E-02
188GO:0071472: cellular response to salt stress3.06E-02
189GO:0010154: fruit development3.06E-02
190GO:0006662: glycerol ether metabolic process3.06E-02
191GO:0010197: polar nucleus fusion3.06E-02
192GO:0009741: response to brassinosteroid3.06E-02
193GO:0010268: brassinosteroid homeostasis3.06E-02
194GO:0006814: sodium ion transport3.22E-02
195GO:0048825: cotyledon development3.39E-02
196GO:0006623: protein targeting to vacuole3.39E-02
197GO:0009851: auxin biosynthetic process3.39E-02
198GO:0055085: transmembrane transport3.43E-02
199GO:0006891: intra-Golgi vesicle-mediated transport3.55E-02
200GO:0016132: brassinosteroid biosynthetic process3.55E-02
201GO:0016042: lipid catabolic process3.60E-02
202GO:0009630: gravitropism3.72E-02
203GO:0016125: sterol metabolic process4.07E-02
204GO:0009828: plant-type cell wall loosening4.07E-02
205GO:0009567: double fertilization forming a zygote and endosperm4.07E-02
206GO:0006413: translational initiation4.23E-02
207GO:0010029: regulation of seed germination4.80E-02
208GO:0006974: cellular response to DNA damage stimulus4.99E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
5GO:0010276: phytol kinase activity0.00E+00
6GO:0008974: phosphoribulokinase activity0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0019156: isoamylase activity5.59E-06
9GO:0019899: enzyme binding7.84E-06
10GO:0016987: sigma factor activity7.72E-05
11GO:0043495: protein anchor7.72E-05
12GO:0001053: plastid sigma factor activity7.72E-05
13GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.72E-05
14GO:0004556: alpha-amylase activity1.74E-04
15GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.36E-04
16GO:0003993: acid phosphatase activity2.36E-04
17GO:0051777: ent-kaurenoate oxidase activity3.52E-04
18GO:0005080: protein kinase C binding3.52E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.52E-04
20GO:0008746: NAD(P)+ transhydrogenase activity3.52E-04
21GO:0004328: formamidase activity3.52E-04
22GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.52E-04
23GO:0046906: tetrapyrrole binding3.52E-04
24GO:0005227: calcium activated cation channel activity3.52E-04
25GO:0004033: aldo-keto reductase (NADP) activity3.84E-04
26GO:0048038: quinone binding5.27E-04
27GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.67E-04
28GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.67E-04
29GO:0004512: inositol-3-phosphate synthase activity7.67E-04
30GO:0003839: gamma-glutamylcyclotransferase activity7.67E-04
31GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.67E-04
32GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.67E-04
33GO:0009977: proton motive force dependent protein transmembrane transporter activity7.67E-04
34GO:0004617: phosphoglycerate dehydrogenase activity7.67E-04
35GO:0004047: aminomethyltransferase activity7.67E-04
36GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.67E-04
37GO:0004312: fatty acid synthase activity7.67E-04
38GO:0016168: chlorophyll binding9.02E-04
39GO:0004751: ribose-5-phosphate isomerase activity1.24E-03
40GO:0070402: NADPH binding1.24E-03
41GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.24E-03
42GO:0015462: ATPase-coupled protein transmembrane transporter activity1.24E-03
43GO:0016491: oxidoreductase activity1.66E-03
44GO:0003883: CTP synthase activity1.79E-03
45GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.79E-03
46GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.79E-03
47GO:0016851: magnesium chelatase activity1.79E-03
48GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.79E-03
49GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.79E-03
50GO:0005528: FK506 binding1.80E-03
51GO:0005509: calcium ion binding2.27E-03
52GO:0004045: aminoacyl-tRNA hydrolase activity2.40E-03
53GO:0009011: starch synthase activity2.40E-03
54GO:0019199: transmembrane receptor protein kinase activity2.40E-03
55GO:0042277: peptide binding2.40E-03
56GO:0008891: glycolate oxidase activity2.40E-03
57GO:0016279: protein-lysine N-methyltransferase activity2.40E-03
58GO:0022891: substrate-specific transmembrane transporter activity2.60E-03
59GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.66E-03
60GO:0042802: identical protein binding3.02E-03
61GO:0016846: carbon-sulfur lyase activity3.07E-03
62GO:0016773: phosphotransferase activity, alcohol group as acceptor3.07E-03
63GO:0003824: catalytic activity3.32E-03
64GO:0004462: lactoylglutathione lyase activity3.79E-03
65GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.79E-03
66GO:0004784: superoxide dismutase activity3.79E-03
67GO:0015081: sodium ion transmembrane transporter activity3.79E-03
68GO:0016615: malate dehydrogenase activity3.79E-03
69GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.79E-03
70GO:0008200: ion channel inhibitor activity3.79E-03
71GO:0004605: phosphatidate cytidylyltransferase activity3.79E-03
72GO:0016788: hydrolase activity, acting on ester bonds4.20E-03
73GO:0004849: uridine kinase activity4.57E-03
74GO:0030060: L-malate dehydrogenase activity4.57E-03
75GO:0005261: cation channel activity4.57E-03
76GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.57E-03
77GO:0008195: phosphatidate phosphatase activity4.57E-03
78GO:0005200: structural constituent of cytoskeleton5.67E-03
79GO:0019843: rRNA binding6.66E-03
80GO:0008135: translation factor activity, RNA binding7.19E-03
81GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism8.16E-03
82GO:0004743: pyruvate kinase activity9.17E-03
83GO:0005381: iron ion transmembrane transporter activity9.17E-03
84GO:0030955: potassium ion binding9.17E-03
85GO:0003924: GTPase activity1.02E-02
86GO:0008047: enzyme activator activity1.02E-02
87GO:0003746: translation elongation factor activity1.06E-02
88GO:0015386: potassium:proton antiporter activity1.13E-02
89GO:0008559: xenobiotic-transporting ATPase activity1.13E-02
90GO:0047372: acylglycerol lipase activity1.13E-02
91GO:0008378: galactosyltransferase activity1.25E-02
92GO:0003725: double-stranded RNA binding1.37E-02
93GO:0031072: heat shock protein binding1.37E-02
94GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.49E-02
95GO:0003774: motor activity1.49E-02
96GO:0005525: GTP binding1.71E-02
97GO:0031409: pigment binding1.74E-02
98GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.85E-02
99GO:0004857: enzyme inhibitor activity1.88E-02
100GO:0030570: pectate lyase activity2.44E-02
101GO:0008810: cellulase activity2.44E-02
102GO:0003727: single-stranded RNA binding2.59E-02
103GO:0052689: carboxylic ester hydrolase activity2.61E-02
104GO:0047134: protein-disulfide reductase activity2.74E-02
105GO:0050662: coenzyme binding3.22E-02
106GO:0010181: FMN binding3.22E-02
107GO:0004791: thioredoxin-disulfide reductase activity3.22E-02
108GO:0016829: lyase activity3.56E-02
109GO:0015385: sodium:proton antiporter activity3.90E-02
110GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.90E-02
111GO:0016791: phosphatase activity4.07E-02
112GO:0008483: transaminase activity4.25E-02
113GO:0016722: oxidoreductase activity, oxidizing metal ions4.25E-02
114GO:0016597: amino acid binding4.43E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0009507: chloroplast1.92E-34
5GO:0009535: chloroplast thylakoid membrane1.90E-19
6GO:0009570: chloroplast stroma2.71E-19
7GO:0009543: chloroplast thylakoid lumen5.33E-13
8GO:0009579: thylakoid5.53E-13
9GO:0009654: photosystem II oxygen evolving complex5.37E-11
10GO:0009941: chloroplast envelope5.41E-11
11GO:0019898: extrinsic component of membrane4.67E-08
12GO:0009534: chloroplast thylakoid1.06E-06
13GO:0030095: chloroplast photosystem II3.12E-06
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.33E-05
15GO:0031977: thylakoid lumen2.86E-05
16GO:0031969: chloroplast membrane2.97E-04
17GO:0005787: signal peptidase complex3.52E-04
18GO:0031361: integral component of thylakoid membrane3.52E-04
19GO:0048046: apoplast4.38E-04
20GO:0009523: photosystem II4.83E-04
21GO:0010319: stromule7.28E-04
22GO:0080085: signal recognition particle, chloroplast targeting7.67E-04
23GO:0033281: TAT protein transport complex1.24E-03
24GO:0010007: magnesium chelatase complex1.24E-03
25GO:0016020: membrane1.77E-03
26GO:0042646: plastid nucleoid1.79E-03
27GO:0015630: microtubule cytoskeleton1.79E-03
28GO:0042651: thylakoid membrane1.98E-03
29GO:0009517: PSII associated light-harvesting complex II2.40E-03
30GO:0005618: cell wall3.75E-03
31GO:0009522: photosystem I3.83E-03
32GO:0009295: nucleoid5.67E-03
33GO:0012507: ER to Golgi transport vesicle membrane6.27E-03
34GO:0009539: photosystem II reaction center7.19E-03
35GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.19E-03
36GO:0042644: chloroplast nucleoid8.16E-03
37GO:0045298: tubulin complex8.16E-03
38GO:0005763: mitochondrial small ribosomal subunit8.16E-03
39GO:0016459: myosin complex1.02E-02
40GO:0032040: small-subunit processome1.25E-02
41GO:0009505: plant-type cell wall1.29E-02
42GO:0009508: plastid chromosome1.37E-02
43GO:0030076: light-harvesting complex1.61E-02
44GO:0005773: vacuole1.88E-02
45GO:0005840: ribosome2.64E-02
46GO:0016021: integral component of membrane3.22E-02
47GO:0031225: anchored component of membrane4.62E-02
48GO:0030529: intracellular ribonucleoprotein complex4.62E-02
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Gene type



Gene DE type